Wall clock time and date at job start Mon Mar 30 2020 02:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46849 * 2 1 4 4 C 1.52992 * 109.47526 * 239.99747 * 2 1 3 5 5 C 1.50701 * 109.47164 * 64.99941 * 4 2 1 6 6 H 1.08008 * 119.99868 * 0.02562 * 5 4 2 7 7 C 1.37882 * 120.00359 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99469 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99959 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47224 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47023 * 120.00583 * 9 7 5 12 12 H 1.48500 * 109.47007 * 240.00163 * 9 7 5 13 13 C 1.53001 * 109.46926 * 119.99712 * 2 1 3 14 14 N 1.46898 * 109.47190 * 295.00457 * 13 2 1 15 15 C 1.46905 * 111.00171 * 179.97438 * 14 13 2 16 16 H 1.09002 * 109.70841 * 324.45960 * 15 14 13 17 17 C 1.53332 * 109.70311 * 203.93030 * 15 14 13 18 18 C 1.53112 * 109.52705 * 190.31960 * 17 15 14 19 19 C 1.53360 * 109.50559 * 70.26206 * 18 17 15 20 20 C 1.50830 * 108.38568 * 310.07148 * 19 18 17 21 21 C 1.35747 * 124.11983 * 16.57013 * 20 19 18 22 22 C 1.39294 * 107.98764 * 180.11028 * 21 20 19 23 23 N 1.31070 * 108.08258 * 359.95160 * 22 21 20 24 24 N 1.34327 * 128.03389 * 196.61090 * 20 19 18 25 25 C 1.46498 * 126.09180 * 359.88920 * 24 20 19 26 26 H 1.08993 * 109.47595 * 299.99947 * 1 2 3 27 27 H 1.09004 * 109.47069 * 60.00374 * 1 2 3 28 28 H 1.09000 * 109.46849 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47592 * 185.00231 * 4 2 1 30 30 H 1.09004 * 109.47243 * 305.00393 * 4 2 1 31 31 H 0.97000 * 119.99373 * 179.97438 * 8 7 5 32 32 H 1.08997 * 109.47106 * 175.00473 * 13 2 1 33 33 H 1.09005 * 109.47127 * 55.00280 * 13 2 1 34 34 H 1.00898 * 111.00381 * 56.04473 * 14 13 2 35 35 H 1.08998 * 109.45797 * 70.30439 * 17 15 14 36 36 H 1.08997 * 109.45948 * 310.33251 * 17 15 14 37 37 H 1.09002 * 109.46468 * 310.25130 * 18 17 15 38 38 H 1.08998 * 109.46064 * 190.26814 * 18 17 15 39 39 H 1.08995 * 109.68672 * 69.79882 * 19 18 17 40 40 H 1.09004 * 109.67874 * 190.31264 * 19 18 17 41 41 H 1.08004 * 125.95985 * 179.97438 * 22 21 20 42 42 H 1.09000 * 109.47415 * 90.00174 * 25 24 20 43 43 H 1.08997 * 109.46728 * 210.00231 * 25 24 20 44 44 H 1.08998 * 109.46938 * 329.99773 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2491 5 6 1.6415 0.0570 -2.4765 6 1 1.0807 0.9746 -2.3757 7 6 1.9935 -0.4018 -3.7282 8 7 2.6767 -1.5188 -3.8510 9 14 1.4999 0.5633 -5.2496 10 1 0.7423 1.7742 -4.8434 11 1 2.7183 0.9681 -5.9958 12 1 0.6462 -0.2856 -6.1189 13 6 2.0400 -0.7212 1.2493 14 7 1.6513 0.0375 2.4456 15 6 2.1246 -0.6271 3.6673 16 1 2.0732 -1.7085 3.5410 17 6 1.2535 -0.2044 4.8563 18 6 1.8967 -0.6873 6.1592 19 6 3.1705 0.1220 6.4321 20 6 4.0130 0.1192 5.1811 21 6 3.5479 -0.2157 3.9505 22 6 4.6027 -0.1058 3.0474 23 7 5.6657 0.2824 3.7087 24 7 5.3139 0.4308 5.0587 25 6 6.2063 0.8509 6.1419 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 3.1264 -0.7995 -1.2054 30 1 1.6055 -1.7198 -1.2951 31 1 2.9240 -1.8417 -4.7316 32 1 3.1263 -0.7994 1.2057 33 1 1.6054 -1.7198 1.2952 34 1 0.6527 0.1793 2.4753 35 1 0.2621 -0.6461 4.7552 36 1 1.1669 0.8819 4.8750 37 1 2.1498 -1.7438 6.0695 38 1 1.1959 -0.5503 6.9827 39 1 2.9056 1.1463 6.6940 40 1 3.7267 -0.3341 7.2510 41 1 4.5532 -0.3052 1.9871 42 1 6.6791 -0.0262 6.5840 43 1 6.9732 1.5152 5.7438 44 1 5.6305 1.3762 6.9039 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602510672.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:19 Heat of formation + Delta-G solvation = 34.579321 kcal Electronic energy + Delta-G solvation = -21723.633289 eV Core-core repulsion = 18675.640265 eV Total energy + Delta-G solvation = -3047.993024 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.45486 -38.81280 -37.21473 -35.34431 -34.35849 -33.27037 -30.45306 -29.79772 -28.52083 -27.54466 -26.64128 -24.59795 -23.15282 -22.79571 -21.76161 -20.55243 -19.52052 -18.50374 -17.62059 -16.98782 -16.57054 -16.35984 -15.77227 -15.59628 -15.29737 -14.86744 -14.69708 -14.41434 -14.16500 -13.99475 -13.74240 -13.66330 -13.43920 -13.25920 -13.15283 -12.81711 -12.70737 -12.52339 -12.21678 -12.04766 -11.82373 -11.73316 -11.53432 -11.48295 -11.39287 -11.03131 -10.81550 -10.53050 -10.14921 -9.33659 -9.09282 -8.16459 -6.25461 0.93559 1.39791 1.40466 1.53614 1.69364 1.84102 2.42742 3.16927 3.34209 3.63979 3.66517 3.94611 4.17614 4.22210 4.23397 4.25600 4.38002 4.41499 4.48874 4.54113 4.59671 4.60563 4.69020 4.78054 4.82535 4.86986 4.96224 5.00285 5.09445 5.19318 5.26179 5.27237 5.38019 5.44857 5.45827 5.52239 5.59380 5.70415 5.83661 5.91383 6.17510 6.24680 6.34331 6.65269 6.78750 6.90825 7.42679 8.95910 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.025946 B = 0.003631 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.901091 B = 7708.496560 C = 8459.072622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.075 4.075 3 H 0.052 0.948 4 C 0.033 3.967 5 C -0.527 4.527 6 H 0.061 0.939 7 C -0.004 4.004 8 N -0.936 5.936 9 Si 0.961 3.039 10 H -0.261 1.261 11 H -0.281 1.281 12 H -0.278 1.278 13 C 0.078 3.922 14 N -0.681 5.681 15 C 0.163 3.837 16 H 0.038 0.962 17 C -0.116 4.116 18 C -0.105 4.105 19 C -0.049 4.049 20 C 0.088 3.912 21 C -0.240 4.240 22 C 0.045 3.955 23 N -0.347 5.347 24 N -0.374 5.374 25 C 0.092 3.908 26 H 0.069 0.931 27 H 0.044 0.956 28 H 0.041 0.959 29 H -0.017 1.017 30 H -0.010 1.010 31 H 0.261 0.739 32 H 0.053 0.947 33 H 0.022 0.978 34 H 0.348 0.652 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.063 0.937 38 H 0.105 0.895 39 H 0.101 0.899 40 H 0.103 0.897 41 H 0.164 0.836 42 H 0.087 0.913 43 H 0.086 0.914 44 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.398 3.341 27.243 27.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.094 4.094 3 H 0.070 0.930 4 C -0.005 4.005 5 C -0.565 4.565 6 H 0.079 0.921 7 C -0.201 4.201 8 N -0.577 5.577 9 Si 0.786 3.214 10 H -0.185 1.185 11 H -0.207 1.207 12 H -0.204 1.204 13 C -0.051 4.051 14 N -0.314 5.314 15 C 0.052 3.948 16 H 0.055 0.945 17 C -0.154 4.154 18 C -0.143 4.143 19 C -0.088 4.088 20 C -0.043 4.043 21 C -0.252 4.252 22 C -0.138 4.138 23 N -0.170 5.170 24 N -0.156 5.156 25 C -0.048 4.048 26 H 0.088 0.912 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.001 0.999 30 H 0.009 0.991 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.040 0.960 34 H 0.168 0.832 35 H 0.099 0.901 36 H 0.091 0.909 37 H 0.082 0.918 38 H 0.123 0.877 39 H 0.119 0.881 40 H 0.121 0.879 41 H 0.181 0.819 42 H 0.106 0.894 43 H 0.105 0.895 44 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 0.565 4.020 27.125 27.427 hybrid contribution -0.894 -0.864 -1.741 2.139 sum -0.328 3.155 25.384 25.581 Atomic orbital electron populations 1.21632 0.94675 1.00728 1.01154 1.21007 0.96456 0.98713 0.93187 0.92968 1.19003 0.94017 0.94627 0.92822 1.21675 1.34282 1.08469 0.92057 0.92098 1.25967 0.95293 0.96122 1.02690 1.70118 1.40398 1.23027 1.24160 0.85449 0.78035 0.78923 0.78963 1.18510 1.20704 1.20376 1.21932 0.99403 0.94084 0.89710 1.60422 1.19778 1.50440 1.00736 1.19881 0.89795 0.94817 0.90262 0.94464 1.21766 0.98326 1.02221 0.93113 1.21520 0.95857 0.99461 0.97500 1.20530 0.94367 1.03093 0.90815 1.21491 0.85351 0.99056 0.98373 1.20023 0.97251 1.15731 0.92176 1.23678 0.91131 0.98923 1.00097 1.77454 1.24152 1.26462 0.88883 1.48570 1.08303 1.51966 1.06730 1.22183 0.94206 1.01989 0.86443 0.91225 0.93728 0.93954 0.99891 0.99135 0.92998 0.92864 0.95983 0.83162 0.90069 0.90882 0.91823 0.87699 0.88080 0.87913 0.81933 0.89424 0.89535 0.86485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.59 8.77 71.98 0.63 -3.96 16 2 C -0.07 -3.18 2.54 -10.79 -0.03 -3.21 16 3 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 4 C 0.03 1.79 4.45 29.85 0.13 1.93 16 5 C -0.53 -30.67 8.41 25.60 0.22 -30.46 16 6 H 0.06 3.42 7.06 -2.91 -0.02 3.40 16 7 C 0.00 -0.22 5.46 84.66 0.46 0.24 16 8 N -0.94 -58.76 13.29 21.45 0.28 -58.48 16 9 Si 0.96 45.68 29.54 68.60 2.03 47.70 16 10 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 11 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 12 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 13 C 0.08 2.84 4.86 86.30 0.42 3.26 16 14 N -0.68 -20.13 6.25 -494.62 -3.09 -23.22 16 15 C 0.16 4.15 2.85 44.32 0.13 4.27 16 16 H 0.04 1.01 7.82 -2.39 -0.02 1.00 16 17 C -0.12 -1.94 5.19 30.74 0.16 -1.78 16 18 C -0.10 -1.21 5.90 30.75 0.18 -1.03 16 19 C -0.05 -0.59 5.83 30.01 0.17 -0.42 16 20 C 0.09 2.01 6.73 41.64 0.28 2.29 16 21 C -0.24 -6.94 5.60 -20.14 -0.11 -7.06 16 22 C 0.04 1.57 11.25 85.06 0.96 2.53 16 23 N -0.35 -11.82 12.59 -57.28 -0.72 -12.54 16 24 N -0.37 -9.30 4.00 -356.01 -1.42 -10.73 16 25 C 0.09 1.23 11.32 127.77 1.45 2.68 16 26 H 0.07 2.04 6.68 -2.39 -0.02 2.02 16 27 H 0.04 1.79 6.95 -2.38 -0.02 1.77 16 28 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 29 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 30 H -0.01 -0.57 8.14 -2.38 -0.02 -0.59 16 31 H 0.26 15.40 8.31 -92.71 -0.77 14.62 16 32 H 0.05 2.11 5.28 -2.39 -0.01 2.09 16 33 H 0.02 0.80 8.06 -2.38 -0.02 0.78 16 34 H 0.35 8.97 6.64 -89.70 -0.60 8.38 16 35 H 0.08 1.12 8.14 -2.39 -0.02 1.11 16 36 H 0.07 1.27 8.11 -2.39 -0.02 1.25 16 37 H 0.06 0.83 8.11 -2.39 -0.02 0.81 16 38 H 0.10 0.63 8.14 -2.39 -0.02 0.62 16 39 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.10 0.75 8.14 -2.38 -0.02 0.73 16 41 H 0.16 6.13 5.85 -2.91 -0.02 6.11 16 42 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.12 0.77 7.90 -2.39 -0.02 0.75 16 Total: -1.00 -75.51 344.32 2.50 -73.01 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: 0.38 Total: 14.98 kcal Atomic # 6 Polarization: -35.77 SS G_CDS: 5.05 Total: -30.72 kcal Atomic # 7 Polarization: -100.02 SS G_CDS: -4.95 Total: -104.97 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.70 kcal Total: -75.51 2.50 -73.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602510672.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.586 kcal (2) G-P(sol) polarization free energy of solvation -75.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds