Wall clock time and date at job start Mon Mar 30 2020 02:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09006 * 109.46665 * 2 1 4 4 C 1.52995 * 109.46934 * 240.00421 * 2 1 3 5 5 C 1.50702 * 109.47304 * 64.99714 * 4 2 1 6 6 H 1.08003 * 120.00035 * 359.97438 * 5 4 2 7 7 C 1.37877 * 119.99816 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00420 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99674 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47329 * 90.00222 * 9 7 5 11 11 H 1.48503 * 109.47186 * 209.99839 * 9 7 5 12 12 H 1.48502 * 109.47202 * 329.99970 * 9 7 5 13 13 C 1.52998 * 109.47487 * 120.00122 * 2 1 3 14 14 N 1.46903 * 109.46816 * 295.00339 * 13 2 1 15 15 C 1.46900 * 110.99673 * 179.97438 * 14 13 2 16 16 C 1.52996 * 109.47347 * 179.97438 * 15 14 13 17 17 C 1.53003 * 109.47724 * 179.97438 * 16 15 14 18 18 N 1.46489 * 109.47486 * 180.02562 * 17 16 15 19 19 C 1.39001 * 120.00245 * 180.02562 * 18 17 16 20 20 C 1.39146 * 119.70404 * 359.97438 * 19 18 17 21 21 C 1.38295 * 119.09401 * 179.97438 * 20 19 18 22 22 C 1.38884 * 118.51011 * 0.02562 * 21 20 19 23 23 C 1.38022 * 119.32992 * 0.27628 * 22 21 20 24 24 N 1.31980 * 120.85123 * 359.44533 * 23 22 21 25 25 H 1.09003 * 109.46595 * 299.99570 * 1 2 3 26 26 H 1.08993 * 109.47066 * 59.99598 * 1 2 3 27 27 H 1.08998 * 109.46337 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46961 * 184.99602 * 4 2 1 29 29 H 1.08996 * 109.47309 * 304.99379 * 4 2 1 30 30 H 0.96995 * 120.00216 * 180.02562 * 8 7 5 31 31 H 1.08995 * 109.47069 * 175.00484 * 13 2 1 32 32 H 1.09001 * 109.46879 * 54.99809 * 13 2 1 33 33 H 1.00891 * 111.00275 * 303.94737 * 14 13 2 34 34 H 1.09007 * 109.47317 * 59.99820 * 15 14 13 35 35 H 1.08996 * 109.47871 * 300.00108 * 15 14 13 36 36 H 1.09005 * 109.47052 * 60.00280 * 16 15 14 37 37 H 1.08994 * 109.47420 * 300.00621 * 16 15 14 38 38 H 1.09005 * 109.46498 * 60.00099 * 17 16 15 39 39 H 1.08994 * 109.47308 * 300.00848 * 17 16 15 40 40 H 0.97003 * 119.99877 * 0.02562 * 18 17 16 41 41 H 1.08000 * 120.44826 * 0.02676 * 20 19 18 42 42 H 1.08000 * 120.74269 * 180.02562 * 21 20 19 43 43 H 1.08002 * 120.33299 * 179.97438 * 22 21 20 44 44 H 1.07989 * 119.57332 * 179.70393 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 1.6413 0.0572 -2.4766 6 1 1.0799 0.9743 -2.3757 7 6 1.9932 -0.4015 -3.7283 8 7 2.6773 -1.5180 -3.8512 9 14 1.4995 0.5636 -5.2495 10 1 2.5651 1.5433 -5.5817 11 1 1.3129 -0.3700 -6.3892 12 1 0.2282 1.2849 -4.9872 13 6 2.0402 -0.7212 1.2492 14 7 1.6515 0.0374 2.4456 15 6 2.1249 -0.6272 3.6671 16 6 1.7026 0.1908 4.8892 17 6 2.1951 -0.5017 6.1615 18 7 1.7903 0.2812 7.3316 19 6 2.1273 -0.1524 8.6085 20 6 2.8489 -1.3313 8.7683 21 6 3.1779 -1.7507 10.0444 22 6 2.7723 -0.9746 11.1224 23 6 2.0534 0.1807 10.8913 24 7 1.7580 0.5595 9.6620 25 1 -0.3632 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3632 -1.0277 -0.0005 28 1 3.1264 -0.7993 -1.2057 29 1 1.6055 -1.7197 -1.2952 30 1 2.9251 -1.8405 -4.7317 31 1 3.1264 -0.7993 1.2055 32 1 1.6055 -1.7198 1.2951 33 1 1.9882 0.9872 2.3967 34 1 3.2119 -0.7051 3.6405 35 1 1.6907 -1.6249 3.7297 36 1 0.6157 0.2690 4.9161 37 1 2.1372 1.1884 4.8265 38 1 3.2820 -0.5803 6.1349 39 1 1.7603 -1.4991 6.2240 40 1 1.2869 1.1023 7.2153 41 1 3.1487 -1.9104 7.9074 42 1 3.7376 -2.6612 10.1992 43 1 3.0129 -1.2746 12.1317 44 1 1.7319 0.7846 11.7268 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602587498.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:11 Heat of formation + Delta-G solvation = 14.402621 kcal Electronic energy + Delta-G solvation = -19934.413713 eV Core-core repulsion = 16885.545761 eV Total energy + Delta-G solvation = -3048.867951 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.40188 -37.56184 -36.40500 -34.38267 -32.75086 -32.33912 -31.14305 -29.14818 -26.87173 -25.85932 -24.39025 -23.63441 -22.49786 -21.95188 -21.59113 -19.07296 -17.89640 -17.01838 -16.33195 -16.18831 -15.96717 -15.22575 -14.89177 -14.70462 -14.49164 -14.17726 -14.05607 -13.83898 -13.29218 -13.14601 -12.58192 -12.30731 -12.17145 -11.81344 -11.71846 -11.45694 -11.40771 -11.16181 -10.87076 -10.73157 -10.51095 -10.29749 -10.23731 -10.00341 -9.71495 -9.71270 -9.15938 -8.96390 -8.33437 -8.18694 -8.00340 -5.98213 -3.99368 1.01879 1.19198 2.81987 3.32551 3.38967 3.42416 3.67437 4.24064 4.36703 4.48134 4.58246 4.70608 4.82201 4.88339 4.95377 4.97583 5.14210 5.27479 5.35610 5.37734 5.46953 5.52470 5.68806 5.73947 5.81089 5.92564 5.98161 6.02539 6.13938 6.28786 6.39559 6.53016 6.67065 6.72323 6.99373 7.16628 7.18524 7.28247 7.32180 7.59395 7.68798 7.84347 7.91454 8.01891 8.45898 9.06994 9.64048 11.13292 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.063193 B = 0.001947 C = 0.001909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 442.978705 B =14376.549606 C =14662.594428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.083 4.083 3 H 0.053 0.947 4 C 0.027 3.973 5 C -0.513 4.513 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.064 3.936 14 N -0.688 5.688 15 C 0.062 3.938 16 C -0.128 4.128 17 C 0.129 3.871 18 N -0.724 5.724 19 C 0.404 3.596 20 C -0.241 4.241 21 C -0.034 4.034 22 C -0.241 4.241 23 C 0.148 3.852 24 N -0.549 5.549 25 H 0.041 0.959 26 H 0.053 0.947 27 H 0.039 0.961 28 H 0.012 0.988 29 H 0.016 0.984 30 H 0.259 0.741 31 H 0.025 0.975 32 H 0.066 0.934 33 H 0.337 0.663 34 H 0.028 0.972 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.405 0.595 41 H 0.131 0.869 42 H 0.131 0.869 43 H 0.129 0.871 44 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.633 0.583 27.629 27.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.102 4.102 3 H 0.072 0.928 4 C -0.011 4.011 5 C -0.551 4.551 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.065 4.065 14 N -0.319 5.319 15 C -0.068 4.068 16 C -0.166 4.166 17 C 0.004 3.996 18 N -0.356 5.356 19 C 0.168 3.832 20 C -0.266 4.266 21 C -0.060 4.060 22 C -0.264 4.264 23 C -0.010 4.010 24 N -0.267 5.267 25 H 0.060 0.940 26 H 0.072 0.928 27 H 0.058 0.942 28 H 0.031 0.969 29 H 0.035 0.965 30 H 0.069 0.931 31 H 0.043 0.957 32 H 0.085 0.915 33 H 0.155 0.845 34 H 0.047 0.953 35 H 0.091 0.909 36 H 0.098 0.902 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.241 0.759 41 H 0.149 0.851 42 H 0.149 0.851 43 H 0.147 0.853 44 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -0.321 0.805 27.209 27.223 hybrid contribution 1.109 0.112 -0.881 1.420 sum 0.788 0.917 26.328 26.356 Atomic orbital electron populations 1.21590 0.95696 1.00576 1.00156 1.21209 0.96037 0.98916 0.94042 0.92839 1.19125 0.95901 0.95597 0.90447 1.21241 1.34589 1.08301 0.90992 0.92553 1.25028 0.95360 0.95098 0.99123 1.69963 1.39080 1.21247 1.23384 0.86620 0.78918 0.79795 0.82821 1.20776 1.21298 1.19885 1.22158 0.97201 0.97728 0.89371 1.60508 1.64067 1.05808 1.01510 1.21796 0.97327 0.98262 0.89423 1.21729 1.02757 0.99627 0.92533 1.21377 0.99522 0.95003 0.83728 1.44546 1.61051 1.28421 1.01584 1.18403 0.89681 0.89210 0.85955 1.21437 1.07153 0.99166 0.98820 1.21332 0.94706 0.98055 0.91891 1.21804 1.05959 0.98709 0.99908 1.22387 0.92237 0.93568 0.92804 1.67168 1.26351 1.34261 0.98872 0.93956 0.92756 0.94168 0.96940 0.96540 0.93101 0.95711 0.91505 0.84530 0.95342 0.90917 0.90191 0.91296 0.91908 0.91683 0.75907 0.85124 0.85125 0.85289 0.82937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.37 8.89 37.16 0.33 -2.04 16 2 C -0.08 -1.68 2.48 -90.62 -0.22 -1.90 16 3 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 4 C 0.03 0.68 4.45 -27.88 -0.12 0.56 16 5 C -0.51 -14.36 8.41 -34.44 -0.29 -14.64 16 6 H 0.06 1.54 7.06 -52.48 -0.37 1.17 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -26.95 13.29 55.43 0.74 -26.22 16 9 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 12 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 13 C 0.06 1.07 5.07 -3.82 -0.02 1.05 16 14 N -0.69 -9.33 5.96 -113.78 -0.68 -10.00 16 15 C 0.06 0.66 5.69 -3.83 -0.02 0.64 16 16 C -0.13 -1.09 5.59 -26.73 -0.15 -1.24 16 17 C 0.13 1.00 4.89 -4.05 -0.02 0.98 16 18 N -0.72 -6.54 5.73 -60.43 -0.35 -6.88 16 19 C 0.40 4.19 7.65 -155.02 -1.19 3.00 16 20 C -0.24 -2.15 9.33 -39.22 -0.37 -2.51 16 21 C -0.03 -0.26 10.17 -39.32 -0.40 -0.66 16 22 C -0.24 -1.78 10.10 -39.42 -0.40 -2.17 16 23 C 0.15 1.27 11.17 -17.57 -0.20 1.07 16 24 N -0.55 -6.02 10.39 -12.44 -0.13 -6.14 16 25 H 0.04 0.73 7.75 -51.93 -0.40 0.32 16 26 H 0.05 1.12 6.95 -51.93 -0.36 0.76 16 27 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 31 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 33 H 0.34 4.33 8.73 -39.30 -0.34 3.99 16 34 H 0.03 0.30 8.14 -51.92 -0.42 -0.12 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.47 7.93 -51.93 -0.41 0.06 16 39 H 0.06 0.49 7.93 -51.93 -0.41 0.08 16 40 H 0.41 3.51 8.60 -40.82 -0.35 3.16 16 41 H 0.13 0.98 6.71 -52.49 -0.35 0.63 16 42 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 43 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 44 H 0.15 0.88 8.06 -52.49 -0.42 0.46 16 LS Contribution 361.11 15.07 5.44 5.44 Total: -1.00 -31.32 361.11 -10.79 -42.11 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -7.63 Total: 1.42 kcal Atomic # 6 Polarization: -13.24 SS G_CDS: -3.16 Total: -16.40 kcal Atomic # 7 Polarization: -48.83 SS G_CDS: -0.42 Total: -49.25 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.32 -10.79 -42.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602587498.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.511 kcal (2) G-P(sol) polarization free energy of solvation -31.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds