Wall clock time and date at job start Mon Mar 30 2020 02:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09006 * 109.46665 * 2 1 4 4 C 1.52995 * 109.46934 * 240.00421 * 2 1 3 5 5 C 1.50702 * 109.47304 * 64.99714 * 4 2 1 6 6 H 1.08003 * 120.00035 * 359.97438 * 5 4 2 7 7 C 1.37877 * 119.99816 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00420 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99674 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47329 * 90.00222 * 9 7 5 11 11 H 1.48503 * 109.47186 * 209.99839 * 9 7 5 12 12 H 1.48502 * 109.47202 * 329.99970 * 9 7 5 13 13 C 1.52998 * 109.47487 * 120.00122 * 2 1 3 14 14 N 1.46903 * 109.46816 * 295.00339 * 13 2 1 15 15 C 1.46900 * 110.99673 * 179.97438 * 14 13 2 16 16 C 1.52996 * 109.47347 * 179.97438 * 15 14 13 17 17 C 1.53003 * 109.47724 * 179.97438 * 16 15 14 18 18 N 1.46489 * 109.47486 * 180.02562 * 17 16 15 19 19 C 1.39001 * 120.00245 * 180.02562 * 18 17 16 20 20 C 1.39146 * 119.70404 * 359.97438 * 19 18 17 21 21 C 1.38295 * 119.09401 * 179.97438 * 20 19 18 22 22 C 1.38884 * 118.51011 * 0.02562 * 21 20 19 23 23 C 1.38022 * 119.32992 * 0.27628 * 22 21 20 24 24 N 1.31980 * 120.85123 * 359.44533 * 23 22 21 25 25 H 1.09003 * 109.46595 * 299.99570 * 1 2 3 26 26 H 1.08993 * 109.47066 * 59.99598 * 1 2 3 27 27 H 1.08998 * 109.46337 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46961 * 184.99602 * 4 2 1 29 29 H 1.08996 * 109.47309 * 304.99379 * 4 2 1 30 30 H 0.96995 * 120.00216 * 180.02562 * 8 7 5 31 31 H 1.08995 * 109.47069 * 175.00484 * 13 2 1 32 32 H 1.09001 * 109.46879 * 54.99809 * 13 2 1 33 33 H 1.00891 * 111.00275 * 303.94737 * 14 13 2 34 34 H 1.09007 * 109.47317 * 59.99820 * 15 14 13 35 35 H 1.08996 * 109.47871 * 300.00108 * 15 14 13 36 36 H 1.09005 * 109.47052 * 60.00280 * 16 15 14 37 37 H 1.08994 * 109.47420 * 300.00621 * 16 15 14 38 38 H 1.09005 * 109.46498 * 60.00099 * 17 16 15 39 39 H 1.08994 * 109.47308 * 300.00848 * 17 16 15 40 40 H 0.97003 * 119.99877 * 0.02562 * 18 17 16 41 41 H 1.08000 * 120.44826 * 0.02676 * 20 19 18 42 42 H 1.08000 * 120.74269 * 180.02562 * 21 20 19 43 43 H 1.08002 * 120.33299 * 179.97438 * 22 21 20 44 44 H 1.07989 * 119.57332 * 179.70393 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 1.6413 0.0572 -2.4766 6 1 1.0799 0.9743 -2.3757 7 6 1.9932 -0.4015 -3.7283 8 7 2.6773 -1.5180 -3.8512 9 14 1.4995 0.5636 -5.2495 10 1 2.5651 1.5433 -5.5817 11 1 1.3129 -0.3700 -6.3892 12 1 0.2282 1.2849 -4.9872 13 6 2.0402 -0.7212 1.2492 14 7 1.6515 0.0374 2.4456 15 6 2.1249 -0.6272 3.6671 16 6 1.7026 0.1908 4.8892 17 6 2.1951 -0.5017 6.1615 18 7 1.7903 0.2812 7.3316 19 6 2.1273 -0.1524 8.6085 20 6 2.8489 -1.3313 8.7683 21 6 3.1779 -1.7507 10.0444 22 6 2.7723 -0.9746 11.1224 23 6 2.0534 0.1807 10.8913 24 7 1.7580 0.5595 9.6620 25 1 -0.3632 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3632 -1.0277 -0.0005 28 1 3.1264 -0.7993 -1.2057 29 1 1.6055 -1.7197 -1.2952 30 1 2.9251 -1.8405 -4.7317 31 1 3.1264 -0.7993 1.2055 32 1 1.6055 -1.7198 1.2951 33 1 1.9882 0.9872 2.3967 34 1 3.2119 -0.7051 3.6405 35 1 1.6907 -1.6249 3.7297 36 1 0.6157 0.2690 4.9161 37 1 2.1372 1.1884 4.8265 38 1 3.2820 -0.5803 6.1349 39 1 1.7603 -1.4991 6.2240 40 1 1.2869 1.1023 7.2153 41 1 3.1487 -1.9104 7.9074 42 1 3.7376 -2.6612 10.1992 43 1 3.0129 -1.2746 12.1317 44 1 1.7319 0.7846 11.7268 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602587498.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:11 Heat of formation + Delta-G solvation = -4.991017 kcal Electronic energy + Delta-G solvation = -19935.254684 eV Core-core repulsion = 16885.545761 eV Total energy + Delta-G solvation = -3049.708923 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.02276 -38.65791 -37.41761 -35.76636 -34.20771 -33.30061 -32.20471 -29.96544 -28.75164 -27.05902 -25.59956 -24.51756 -23.79966 -22.86367 -22.35107 -20.69585 -18.56870 -18.44616 -17.65882 -17.06199 -16.64407 -16.50418 -16.06246 -15.74855 -15.68157 -15.19562 -15.00289 -14.91661 -14.44214 -14.19830 -13.83849 -13.68941 -13.30551 -13.17713 -12.79776 -12.75295 -12.64798 -12.57928 -12.32798 -12.20343 -12.02946 -11.86496 -11.47131 -11.11941 -11.08470 -10.89348 -10.64414 -10.53172 -10.35951 -9.31647 -8.63610 -8.17437 -6.26457 0.40666 0.58170 1.40370 1.41250 1.52371 2.17335 2.42183 3.04277 3.15924 3.26290 3.78618 3.98198 4.04043 4.11528 4.12859 4.25789 4.30191 4.33904 4.43801 4.53291 4.55460 4.58798 4.68194 4.74209 4.90508 4.91454 4.93871 5.03078 5.17018 5.18092 5.22718 5.30113 5.45254 5.47272 5.51851 5.56712 5.72455 5.81932 5.89411 6.06174 6.12369 6.31885 6.51632 6.62810 6.89702 7.27480 7.41776 8.94508 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.063193 B = 0.001947 C = 0.001909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 442.978705 B =14376.549606 C =14662.594428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.076 4.076 3 H 0.054 0.946 4 C 0.031 3.969 5 C -0.529 4.529 6 H 0.061 0.939 7 C -0.004 4.004 8 N -0.935 5.935 9 Si 0.961 3.039 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.264 1.264 13 C 0.077 3.923 14 N -0.688 5.688 15 C 0.063 3.937 16 C -0.114 4.114 17 C 0.135 3.865 18 N -0.726 5.726 19 C 0.381 3.619 20 C -0.253 4.253 21 C -0.039 4.039 22 C -0.239 4.239 23 C 0.131 3.869 24 N -0.579 5.579 25 H 0.067 0.933 26 H 0.036 0.964 27 H 0.034 0.966 28 H -0.014 1.014 29 H -0.010 1.010 30 H 0.262 0.738 31 H 0.019 0.981 32 H 0.062 0.938 33 H 0.344 0.656 34 H 0.034 0.966 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.404 0.596 41 H 0.141 0.859 42 H 0.156 0.844 43 H 0.156 0.844 44 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.422 1.149 28.924 28.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.095 4.095 3 H 0.072 0.928 4 C -0.006 4.006 5 C -0.567 4.567 6 H 0.079 0.921 7 C -0.201 4.201 8 N -0.576 5.576 9 Si 0.786 3.214 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.188 1.188 13 C -0.052 4.052 14 N -0.319 5.319 15 C -0.067 4.067 16 C -0.152 4.152 17 C 0.011 3.989 18 N -0.359 5.359 19 C 0.145 3.855 20 C -0.278 4.278 21 C -0.064 4.064 22 C -0.262 4.262 23 C -0.026 4.026 24 N -0.298 5.298 25 H 0.086 0.914 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.005 0.995 29 H 0.008 0.992 30 H 0.070 0.930 31 H 0.037 0.963 32 H 0.080 0.920 33 H 0.162 0.838 34 H 0.052 0.948 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.240 0.760 41 H 0.158 0.842 42 H 0.174 0.826 43 H 0.173 0.827 44 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -0.534 1.381 28.529 28.567 hybrid contribution 1.200 -0.095 -1.191 1.693 sum 0.666 1.286 27.338 27.376 Atomic orbital electron populations 1.21489 0.94743 1.00344 1.00486 1.21030 0.96691 0.98473 0.93266 0.92759 1.19025 0.94129 0.94716 0.92773 1.21656 1.34373 1.08595 0.92118 0.92097 1.25961 0.95323 0.96118 1.02676 1.70098 1.40287 1.22938 1.24262 0.85500 0.78988 0.78361 0.78522 1.19916 1.20951 1.18794 1.21837 0.96609 0.97360 0.89384 1.60426 1.64252 1.05994 1.01210 1.21838 0.97664 0.98412 0.88767 1.21553 1.02429 0.99461 0.91786 1.21312 0.99745 0.94860 0.83010 1.44563 1.61214 1.28529 1.01584 1.18685 0.90577 0.90008 0.86204 1.21656 1.07264 0.98980 0.99937 1.21730 0.94365 0.98877 0.91459 1.22142 1.04829 0.97969 1.01212 1.22869 0.92455 0.94499 0.92727 1.67161 1.27470 1.35291 0.99839 0.91384 0.94501 0.94670 0.99518 0.99164 0.92964 0.96262 0.91967 0.83841 0.94786 0.90866 0.90594 0.90876 0.91442 0.91359 0.76034 0.84171 0.82592 0.82670 0.80875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.29 8.89 71.99 0.64 -3.65 16 2 C -0.08 -3.05 2.48 -10.79 -0.03 -3.07 16 3 H 0.05 2.17 8.14 -2.38 -0.02 2.15 16 4 C 0.03 1.63 4.45 29.85 0.13 1.77 16 5 C -0.53 -29.96 8.41 25.60 0.22 -29.75 16 6 H 0.06 3.32 7.06 -2.91 -0.02 3.30 16 7 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 8 N -0.94 -57.21 13.29 21.45 0.28 -56.93 16 9 Si 0.96 44.55 29.54 68.60 2.03 46.58 16 10 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 11 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 12 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 13 C 0.08 2.55 5.07 86.30 0.44 2.99 16 14 N -0.69 -17.55 5.96 -513.89 -3.06 -20.61 16 15 C 0.06 1.23 5.69 86.30 0.49 1.72 16 16 C -0.11 -1.75 5.59 30.59 0.17 -1.58 16 17 C 0.14 1.93 4.89 86.38 0.42 2.36 16 18 N -0.73 -12.63 5.73 -345.09 -1.98 -14.61 16 19 C 0.38 7.68 7.65 133.07 1.02 8.70 16 20 C -0.25 -4.23 9.33 22.50 0.21 -4.02 16 21 C -0.04 -0.51 10.17 22.44 0.23 -0.29 16 22 C -0.24 -3.05 10.10 22.37 0.23 -2.82 16 23 C 0.13 2.10 11.17 84.62 0.95 3.05 16 24 N -0.58 -12.45 10.39 -193.26 -2.01 -14.46 16 25 H 0.07 2.21 7.75 -2.39 -0.02 2.19 16 26 H 0.04 1.49 6.95 -2.39 -0.02 1.48 16 27 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 28 H -0.01 -0.77 8.14 -2.38 -0.02 -0.79 16 29 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 30 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 31 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.34 8.18 8.73 -89.70 -0.78 7.40 16 34 H 0.03 0.65 8.14 -2.38 -0.02 0.63 16 35 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 37 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.07 0.91 7.93 -2.38 -0.02 0.89 16 39 H 0.07 0.94 7.93 -2.39 -0.02 0.92 16 40 H 0.40 6.85 8.60 -92.71 -0.80 6.05 16 41 H 0.14 1.92 6.71 -2.91 -0.02 1.90 16 42 H 0.16 1.17 8.06 -2.91 -0.02 1.15 16 43 H 0.16 1.07 8.06 -2.91 -0.02 1.05 16 44 H 0.17 1.77 8.06 -2.92 -0.02 1.74 16 Total: -1.00 -67.78 361.11 0.23 -67.55 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: -0.61 Total: 16.80 kcal Atomic # 6 Polarization: -29.91 SS G_CDS: 5.57 Total: -24.34 kcal Atomic # 7 Polarization: -99.83 SS G_CDS: -6.76 Total: -106.59 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -67.78 0.23 -67.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602587498.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.561 kcal (2) G-P(sol) polarization free energy of solvation -67.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds