Wall clock time and date at job start Mon Mar 30 2020 02:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09008 * 109.47085 * 2 1 4 4 C 1.52998 * 109.47018 * 119.99510 * 2 1 3 5 5 C 1.50697 * 109.47621 * 295.00180 * 4 2 1 6 6 H 1.08003 * 119.99920 * 359.97438 * 5 4 2 7 7 C 1.37874 * 120.00385 * 179.97438 * 5 4 2 8 8 N 1.31510 * 119.99861 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00172 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47113 * 89.99925 * 9 7 5 11 11 H 1.48500 * 109.47059 * 210.00112 * 9 7 5 12 12 H 1.48506 * 109.46898 * 329.99842 * 9 7 5 13 13 C 1.52998 * 109.46994 * 239.99718 * 2 1 3 14 14 N 1.46903 * 109.46816 * 65.00201 * 13 2 1 15 15 C 1.46900 * 110.99673 * 179.97438 * 14 13 2 16 16 C 1.52996 * 109.47347 * 179.97438 * 15 14 13 17 17 C 1.53003 * 109.47724 * 179.97438 * 16 15 14 18 18 N 1.46489 * 109.47486 * 180.02562 * 17 16 15 19 19 C 1.39001 * 120.00245 * 180.02562 * 18 17 16 20 20 C 1.39146 * 119.70404 * 359.97438 * 19 18 17 21 21 C 1.38295 * 119.09401 * 179.97438 * 20 19 18 22 22 C 1.38884 * 118.51011 * 0.02562 * 21 20 19 23 23 C 1.38022 * 119.32992 * 0.27628 * 22 21 20 24 24 N 1.31980 * 120.85123 * 359.44533 * 23 22 21 25 25 H 1.08992 * 109.47273 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46927 * 300.00220 * 1 2 3 27 27 H 1.09001 * 109.46900 * 60.00090 * 1 2 3 28 28 H 1.09002 * 109.46621 * 55.00092 * 4 2 1 29 29 H 1.08999 * 109.46669 * 174.99743 * 4 2 1 30 30 H 0.97004 * 120.00285 * 179.97438 * 8 7 5 31 31 H 1.08995 * 109.47069 * 305.00346 * 13 2 1 32 32 H 1.09001 * 109.46879 * 184.99671 * 13 2 1 33 33 H 1.00891 * 111.00275 * 303.94737 * 14 13 2 34 34 H 1.09007 * 109.47317 * 59.99820 * 15 14 13 35 35 H 1.08996 * 109.47871 * 300.00108 * 15 14 13 36 36 H 1.09005 * 109.47052 * 60.00280 * 16 15 14 37 37 H 1.08994 * 109.47420 * 300.00621 * 16 15 14 38 38 H 1.09005 * 109.46498 * 60.00099 * 17 16 15 39 39 H 1.08994 * 109.47308 * 300.00848 * 17 16 15 40 40 H 0.97003 * 119.99877 * 0.02562 * 18 17 16 41 41 H 1.08000 * 120.44826 * 0.02676 * 20 19 18 42 42 H 1.08000 * 120.74269 * 180.02562 * 21 20 19 43 43 H 1.08002 * 120.33299 * 179.97438 * 22 21 20 44 44 H 1.07989 * 119.57332 * 179.70393 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6413 0.0571 2.4766 6 1 1.0806 0.9747 2.3757 7 6 1.9923 -0.4021 3.7284 8 7 2.6755 -1.5191 3.8513 9 14 1.4987 0.5631 5.2497 10 1 0.1711 0.0959 5.7231 11 1 2.5078 0.3523 6.3186 12 1 1.4250 2.0084 4.9165 13 6 2.0400 -0.7213 -1.2492 14 7 1.6513 0.0374 -2.4456 15 6 2.1257 -0.6266 -3.6671 16 6 1.7024 0.1907 -4.8892 17 6 2.1969 -0.5004 -6.1614 18 7 1.7921 0.2825 -7.3315 19 6 2.1299 -0.1506 -8.6084 20 6 2.8533 -1.3285 -8.7681 21 6 3.1821 -1.7479 -10.0442 22 6 2.7757 -0.9724 -11.1222 23 6 2.0659 0.1884 -10.8905 24 7 1.7614 0.5617 -9.6618 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.6053 -1.7197 1.2952 29 1 3.1263 -0.7994 1.2056 30 1 2.9228 -1.8420 4.7319 31 1 1.6053 -1.7198 -1.2951 32 1 3.1263 -0.7995 -1.2055 33 1 0.6529 0.1792 -2.4753 34 1 1.6920 -1.6247 -3.7300 35 1 3.2126 -0.7039 -3.6401 36 1 2.1358 1.1890 -4.8266 37 1 0.6155 0.2677 -4.9161 38 1 1.7639 -1.4988 -6.2242 39 1 3.2839 -0.5770 -6.1343 40 1 1.2882 1.1032 -7.2152 41 1 3.1530 -1.9077 -7.9072 42 1 3.7424 -2.6581 -10.1989 43 1 3.0168 -1.2720 -12.1314 44 1 1.7520 0.7970 -11.7256 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602587499.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:14 Heat of formation + Delta-G solvation = 14.711439 kcal Electronic energy + Delta-G solvation = -19939.785644 eV Core-core repulsion = 16890.931084 eV Total energy + Delta-G solvation = -3048.854560 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.40080 -37.60201 -36.44737 -34.36841 -32.75169 -32.35057 -31.11763 -29.13932 -26.91726 -25.95015 -24.47941 -23.66194 -22.49128 -21.91009 -21.56524 -18.96586 -17.90697 -17.01526 -16.51876 -16.13560 -15.96337 -15.30912 -14.94891 -14.67490 -14.49354 -14.26720 -13.94206 -13.71018 -13.28961 -13.25867 -12.44863 -12.39262 -12.20184 -12.03257 -11.74570 -11.56848 -11.34292 -11.17746 -10.86670 -10.75832 -10.51084 -10.33604 -10.22006 -10.00225 -9.73204 -9.71232 -9.16701 -8.97379 -8.33624 -8.20955 -8.00238 -5.98192 -3.99386 1.02000 1.19312 2.82094 3.32651 3.39081 3.42561 3.67553 4.24336 4.36828 4.48180 4.58347 4.70662 4.82302 4.88477 4.95428 4.97674 5.14349 5.27686 5.35564 5.37649 5.47076 5.52545 5.73822 5.74045 5.74890 5.92374 5.95787 6.02531 6.03917 6.23629 6.28911 6.44226 6.53639 6.72301 6.91511 7.08980 7.15449 7.28373 7.32124 7.59609 7.69078 7.84775 7.91569 8.01910 8.45737 9.06928 9.64065 11.13291 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.063138 B = 0.001947 C = 0.001909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 443.369022 B =14376.084485 C =14663.279763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.085 4.085 3 H 0.065 0.935 4 C 0.028 3.972 5 C -0.513 4.513 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.064 3.936 14 N -0.691 5.691 15 C 0.062 3.938 16 C -0.129 4.129 17 C 0.129 3.871 18 N -0.724 5.724 19 C 0.404 3.596 20 C -0.241 4.241 21 C -0.034 4.034 22 C -0.241 4.241 23 C 0.148 3.852 24 N -0.549 5.549 25 H 0.041 0.959 26 H 0.063 0.937 27 H 0.031 0.969 28 H 0.014 0.986 29 H 0.015 0.985 30 H 0.259 0.741 31 H 0.024 0.976 32 H 0.067 0.933 33 H 0.338 0.662 34 H 0.028 0.972 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.405 0.595 41 H 0.131 0.869 42 H 0.131 0.869 43 H 0.129 0.871 44 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.653 -0.223 -27.607 27.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.104 4.104 3 H 0.084 0.916 4 C -0.010 4.010 5 C -0.552 4.552 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.064 4.064 14 N -0.323 5.323 15 C -0.069 4.069 16 C -0.167 4.167 17 C 0.004 3.996 18 N -0.356 5.356 19 C 0.168 3.832 20 C -0.266 4.266 21 C -0.060 4.060 22 C -0.264 4.264 23 C -0.010 4.010 24 N -0.266 5.266 25 H 0.060 0.940 26 H 0.082 0.918 27 H 0.050 0.950 28 H 0.032 0.968 29 H 0.034 0.966 30 H 0.069 0.931 31 H 0.042 0.958 32 H 0.086 0.914 33 H 0.157 0.843 34 H 0.046 0.954 35 H 0.091 0.909 36 H 0.098 0.902 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.241 0.759 41 H 0.149 0.851 42 H 0.149 0.851 43 H 0.147 0.853 44 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -0.432 0.712 -27.120 27.133 hybrid contribution -0.524 -0.853 0.781 1.270 sum -0.956 -0.141 -26.339 26.357 Atomic orbital electron populations 1.21744 0.96684 1.00430 1.00294 1.21233 0.94880 1.00125 0.94156 0.91616 1.19112 0.96149 0.95364 0.90365 1.21238 1.34662 1.08274 0.90985 0.92552 1.25025 0.95325 0.95119 0.99124 1.69964 1.39038 1.21279 1.23372 0.86621 0.78178 0.80454 0.82910 1.20767 1.21297 1.19888 1.22145 1.00393 0.94423 0.89447 1.60550 1.19631 1.50649 1.01449 1.21800 1.00882 0.94870 0.89299 1.21732 1.01690 1.00763 0.92499 1.21376 0.99758 0.94784 0.83703 1.44546 1.61037 1.28436 1.01582 1.18403 0.89661 0.89235 0.85950 1.21438 1.07140 0.99177 0.98822 1.21332 0.94672 0.98093 0.91887 1.21804 1.06072 0.98602 0.99904 1.22387 0.92212 0.93590 0.92807 1.67167 1.26215 1.34378 0.98890 0.94032 0.91830 0.94974 0.96759 0.96643 0.93099 0.95774 0.91420 0.84330 0.95357 0.90853 0.90154 0.91332 0.91909 0.91650 0.75905 0.85120 0.85124 0.85289 0.82937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.46 8.77 37.16 0.33 -2.14 16 2 C -0.09 -1.72 2.55 -90.62 -0.23 -1.95 16 3 H 0.07 1.39 8.14 -51.92 -0.42 0.97 16 4 C 0.03 0.70 4.45 -27.89 -0.12 0.58 16 5 C -0.51 -14.34 8.41 -34.44 -0.29 -14.63 16 6 H 0.06 1.53 7.06 -52.48 -0.37 1.16 16 7 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -26.91 13.29 55.43 0.74 -26.18 16 9 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 13 C 0.06 1.09 5.14 -3.82 -0.02 1.07 16 14 N -0.69 -9.58 6.50 -113.78 -0.74 -10.32 16 15 C 0.06 0.67 5.69 -3.83 -0.02 0.65 16 16 C -0.13 -1.11 5.59 -26.73 -0.15 -1.26 16 17 C 0.13 1.01 4.89 -4.05 -0.02 0.99 16 18 N -0.72 -6.57 5.73 -60.43 -0.35 -6.92 16 19 C 0.40 4.20 7.65 -155.02 -1.19 3.01 16 20 C -0.24 -2.15 9.33 -39.22 -0.37 -2.52 16 21 C -0.03 -0.26 10.17 -39.32 -0.40 -0.66 16 22 C -0.24 -1.78 10.10 -39.42 -0.40 -2.18 16 23 C 0.15 1.27 11.17 -17.57 -0.20 1.07 16 24 N -0.55 -6.03 10.39 -12.44 -0.13 -6.16 16 25 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.06 1.27 6.95 -51.93 -0.36 0.91 16 27 H 0.03 0.49 6.68 -51.93 -0.35 0.14 16 28 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 31 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.34 4.43 6.98 -39.30 -0.27 4.16 16 34 H 0.03 0.30 8.14 -51.92 -0.42 -0.12 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.47 7.93 -51.93 -0.41 0.06 16 39 H 0.07 0.50 7.93 -51.93 -0.41 0.09 16 40 H 0.41 3.53 8.60 -40.82 -0.35 3.18 16 41 H 0.13 0.99 6.71 -52.49 -0.35 0.63 16 42 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 43 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 44 H 0.15 0.88 8.06 -52.49 -0.42 0.46 16 LS Contribution 358.85 15.07 5.41 5.41 Total: -1.00 -31.27 358.85 -10.77 -42.04 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -7.51 Total: 1.95 kcal Atomic # 6 Polarization: -13.31 SS G_CDS: -3.17 Total: -16.48 kcal Atomic # 7 Polarization: -49.09 SS G_CDS: -0.48 Total: -49.57 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.27 -10.77 -42.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602587499.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.753 kcal (2) G-P(sol) polarization free energy of solvation -31.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds