Wall clock time and date at job start Mon Mar 30 2020 02:05:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09008 * 109.47085 * 2 1 4 4 C 1.52998 * 109.47018 * 119.99510 * 2 1 3 5 5 C 1.50697 * 109.47621 * 295.00180 * 4 2 1 6 6 H 1.08003 * 119.99920 * 359.97438 * 5 4 2 7 7 C 1.37874 * 120.00385 * 179.97438 * 5 4 2 8 8 N 1.31510 * 119.99861 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00172 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47113 * 89.99925 * 9 7 5 11 11 H 1.48500 * 109.47059 * 210.00112 * 9 7 5 12 12 H 1.48506 * 109.46898 * 329.99842 * 9 7 5 13 13 C 1.52998 * 109.46994 * 239.99718 * 2 1 3 14 14 N 1.46903 * 109.46816 * 65.00201 * 13 2 1 15 15 C 1.46900 * 110.99673 * 179.97438 * 14 13 2 16 16 C 1.52996 * 109.47347 * 179.97438 * 15 14 13 17 17 C 1.53003 * 109.47724 * 179.97438 * 16 15 14 18 18 N 1.46489 * 109.47486 * 180.02562 * 17 16 15 19 19 C 1.39001 * 120.00245 * 180.02562 * 18 17 16 20 20 C 1.39146 * 119.70404 * 359.97438 * 19 18 17 21 21 C 1.38295 * 119.09401 * 179.97438 * 20 19 18 22 22 C 1.38884 * 118.51011 * 0.02562 * 21 20 19 23 23 C 1.38022 * 119.32992 * 0.27628 * 22 21 20 24 24 N 1.31980 * 120.85123 * 359.44533 * 23 22 21 25 25 H 1.08992 * 109.47273 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46927 * 300.00220 * 1 2 3 27 27 H 1.09001 * 109.46900 * 60.00090 * 1 2 3 28 28 H 1.09002 * 109.46621 * 55.00092 * 4 2 1 29 29 H 1.08999 * 109.46669 * 174.99743 * 4 2 1 30 30 H 0.97004 * 120.00285 * 179.97438 * 8 7 5 31 31 H 1.08995 * 109.47069 * 305.00346 * 13 2 1 32 32 H 1.09001 * 109.46879 * 184.99671 * 13 2 1 33 33 H 1.00891 * 111.00275 * 303.94737 * 14 13 2 34 34 H 1.09007 * 109.47317 * 59.99820 * 15 14 13 35 35 H 1.08996 * 109.47871 * 300.00108 * 15 14 13 36 36 H 1.09005 * 109.47052 * 60.00280 * 16 15 14 37 37 H 1.08994 * 109.47420 * 300.00621 * 16 15 14 38 38 H 1.09005 * 109.46498 * 60.00099 * 17 16 15 39 39 H 1.08994 * 109.47308 * 300.00848 * 17 16 15 40 40 H 0.97003 * 119.99877 * 0.02562 * 18 17 16 41 41 H 1.08000 * 120.44826 * 0.02676 * 20 19 18 42 42 H 1.08000 * 120.74269 * 180.02562 * 21 20 19 43 43 H 1.08002 * 120.33299 * 179.97438 * 22 21 20 44 44 H 1.07989 * 119.57332 * 179.70393 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6413 0.0571 2.4766 6 1 1.0806 0.9747 2.3757 7 6 1.9923 -0.4021 3.7284 8 7 2.6755 -1.5191 3.8513 9 14 1.4987 0.5631 5.2497 10 1 0.1711 0.0959 5.7231 11 1 2.5078 0.3523 6.3186 12 1 1.4250 2.0084 4.9165 13 6 2.0400 -0.7213 -1.2492 14 7 1.6513 0.0374 -2.4456 15 6 2.1257 -0.6266 -3.6671 16 6 1.7024 0.1907 -4.8892 17 6 2.1969 -0.5004 -6.1614 18 7 1.7921 0.2825 -7.3315 19 6 2.1299 -0.1506 -8.6084 20 6 2.8533 -1.3285 -8.7681 21 6 3.1821 -1.7479 -10.0442 22 6 2.7757 -0.9724 -11.1222 23 6 2.0659 0.1884 -10.8905 24 7 1.7614 0.5617 -9.6618 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.6053 -1.7197 1.2952 29 1 3.1263 -0.7994 1.2056 30 1 2.9228 -1.8420 4.7319 31 1 1.6053 -1.7198 -1.2951 32 1 3.1263 -0.7995 -1.2055 33 1 0.6529 0.1792 -2.4753 34 1 1.6920 -1.6247 -3.7300 35 1 3.2126 -0.7039 -3.6401 36 1 2.1358 1.1890 -4.8266 37 1 0.6155 0.2677 -4.9161 38 1 1.7639 -1.4988 -6.2242 39 1 3.2839 -0.5770 -6.1343 40 1 1.2882 1.1032 -7.2152 41 1 3.1530 -1.9077 -7.9072 42 1 3.7424 -2.6581 -10.1989 43 1 3.0168 -1.2720 -12.1314 44 1 1.7520 0.7970 -11.7256 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602587499.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:13 Heat of formation + Delta-G solvation = -4.864446 kcal Electronic energy + Delta-G solvation = -19940.634518 eV Core-core repulsion = 16890.931084 eV Total energy + Delta-G solvation = -3049.703434 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.02309 -38.72880 -37.43362 -35.75240 -34.21323 -33.29773 -32.18715 -29.96882 -28.75808 -27.16882 -25.66113 -24.51775 -23.79373 -22.85696 -22.32624 -20.60046 -18.61418 -18.45600 -17.66182 -17.18576 -16.65395 -16.50222 -16.21381 -15.82292 -15.36465 -15.22689 -15.06475 -14.89067 -14.46788 -14.12163 -13.83820 -13.77707 -13.35964 -13.31595 -12.80060 -12.77072 -12.69642 -12.53564 -12.34298 -12.22953 -11.96978 -11.89497 -11.47110 -11.12050 -11.06357 -10.91775 -10.64415 -10.53181 -10.35936 -9.34063 -8.63667 -8.17312 -6.26328 0.40695 0.58182 1.40433 1.41400 1.52442 2.17128 2.42280 3.04291 3.16081 3.25775 3.78600 3.98119 4.03793 4.10380 4.15255 4.25239 4.28558 4.31122 4.43738 4.47662 4.54764 4.57146 4.66455 4.73748 4.79699 4.87920 4.91127 5.04350 5.15813 5.18087 5.19904 5.26642 5.39587 5.45274 5.49307 5.56111 5.72422 5.80664 5.89850 6.07016 6.12734 6.31878 6.52151 6.62718 6.89759 7.27456 7.41887 8.94630 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.063138 B = 0.001947 C = 0.001909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 443.369022 B =14376.084485 C =14663.279763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.077 4.077 3 H 0.056 0.944 4 C 0.032 3.968 5 C -0.530 4.530 6 H 0.061 0.939 7 C -0.003 4.003 8 N -0.935 5.935 9 Si 0.961 3.039 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.264 1.264 13 C 0.077 3.923 14 N -0.693 5.693 15 C 0.062 3.938 16 C -0.115 4.115 17 C 0.136 3.864 18 N -0.726 5.726 19 C 0.381 3.619 20 C -0.253 4.253 21 C -0.039 4.039 22 C -0.239 4.239 23 C 0.131 3.869 24 N -0.579 5.579 25 H 0.040 0.960 26 H 0.044 0.956 27 H 0.067 0.933 28 H -0.010 1.010 29 H -0.013 1.013 30 H 0.262 0.738 31 H 0.025 0.975 32 H 0.057 0.943 33 H 0.345 0.655 34 H 0.037 0.963 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.404 0.596 41 H 0.141 0.859 42 H 0.156 0.844 43 H 0.156 0.844 44 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.242 0.121 -28.963 28.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.096 4.096 3 H 0.074 0.926 4 C -0.006 4.006 5 C -0.568 4.568 6 H 0.079 0.921 7 C -0.201 4.201 8 N -0.576 5.576 9 Si 0.786 3.214 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.189 1.189 13 C -0.052 4.052 14 N -0.325 5.325 15 C -0.068 4.068 16 C -0.153 4.153 17 C 0.011 3.989 18 N -0.359 5.359 19 C 0.145 3.855 20 C -0.278 4.278 21 C -0.064 4.064 22 C -0.261 4.261 23 C -0.026 4.026 24 N -0.298 5.298 25 H 0.059 0.941 26 H 0.063 0.937 27 H 0.086 0.914 28 H 0.009 0.991 29 H 0.005 0.995 30 H 0.070 0.930 31 H 0.043 0.957 32 H 0.076 0.924 33 H 0.164 0.836 34 H 0.055 0.945 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.240 0.760 41 H 0.158 0.842 42 H 0.174 0.826 43 H 0.173 0.827 44 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -1.030 1.063 -28.501 28.539 hybrid contribution -0.308 -0.988 1.108 1.516 sum -1.338 0.075 -27.392 27.425 Atomic orbital electron populations 1.21654 0.94948 1.00683 1.01141 1.21036 0.96273 0.98994 0.93336 0.92592 1.19013 0.94249 0.94605 0.92706 1.21653 1.34438 1.08560 0.92108 0.92107 1.25958 0.95291 0.96143 1.02672 1.70098 1.40256 1.22966 1.24248 0.85500 0.77992 0.79252 0.78624 1.19850 1.20962 1.18854 1.21827 0.99644 0.94259 0.89464 1.60460 1.20208 1.50503 1.01372 1.21849 1.00861 0.95432 0.88636 1.21561 1.01939 1.00028 0.91776 1.21309 0.99888 0.94748 0.82957 1.44561 1.61202 1.28550 1.01582 1.18684 0.90562 0.90035 0.86193 1.21657 1.07242 0.98992 0.99942 1.21730 0.94329 0.98916 0.91453 1.22142 1.04933 0.97862 1.01209 1.22869 0.92420 0.94534 0.92728 1.67160 1.27343 1.35399 0.99858 0.94054 0.93679 0.91378 0.99137 0.99487 0.92963 0.95710 0.92407 0.83579 0.94525 0.90979 0.90723 0.90762 0.91311 0.91409 0.76035 0.84162 0.82587 0.82667 0.80874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.52 8.77 71.98 0.63 -3.89 16 2 C -0.08 -3.13 2.55 -10.79 -0.03 -3.16 16 3 H 0.06 2.36 8.14 -2.38 -0.02 2.34 16 4 C 0.03 1.67 4.45 29.85 0.13 1.80 16 5 C -0.53 -30.00 8.41 25.60 0.22 -29.78 16 6 H 0.06 3.31 7.06 -2.91 -0.02 3.29 16 7 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 8 N -0.93 -57.21 13.29 21.45 0.28 -56.93 16 9 Si 0.96 44.58 29.54 68.60 2.03 46.60 16 10 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 11 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 12 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 13 C 0.08 2.57 5.14 86.30 0.44 3.02 16 14 N -0.69 -18.13 6.50 -513.89 -3.34 -21.47 16 15 C 0.06 1.24 5.69 86.30 0.49 1.73 16 16 C -0.11 -1.79 5.59 30.59 0.17 -1.62 16 17 C 0.14 1.95 4.89 86.38 0.42 2.37 16 18 N -0.73 -12.68 5.73 -345.09 -1.98 -14.66 16 19 C 0.38 7.69 7.65 133.07 1.02 8.71 16 20 C -0.25 -4.23 9.33 22.50 0.21 -4.02 16 21 C -0.04 -0.51 10.17 22.44 0.23 -0.29 16 22 C -0.24 -3.05 10.10 22.37 0.23 -2.82 16 23 C 0.13 2.10 11.17 84.62 0.95 3.05 16 24 N -0.58 -12.46 10.39 -193.26 -2.01 -14.47 16 25 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.04 1.76 6.95 -2.39 -0.02 1.74 16 27 H 0.07 1.92 6.68 -2.39 -0.02 1.91 16 28 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 29 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 30 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 31 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.34 8.22 6.98 -89.70 -0.63 7.60 16 34 H 0.04 0.70 8.14 -2.38 -0.02 0.68 16 35 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 37 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.07 0.92 7.93 -2.38 -0.02 0.90 16 39 H 0.07 0.95 7.93 -2.39 -0.02 0.93 16 40 H 0.40 6.88 8.60 -92.71 -0.80 6.08 16 41 H 0.14 1.93 6.71 -2.91 -0.02 1.91 16 42 H 0.16 1.17 8.06 -2.91 -0.02 1.15 16 43 H 0.16 1.07 8.06 -2.91 -0.02 1.05 16 44 H 0.17 1.77 8.06 -2.92 -0.02 1.75 16 Total: -1.00 -68.12 358.85 0.11 -68.01 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: -0.45 Total: 17.54 kcal Atomic # 6 Polarization: -30.21 SS G_CDS: 5.57 Total: -24.64 kcal Atomic # 7 Polarization: -100.48 SS G_CDS: -7.04 Total: -107.52 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.60 kcal Total: -68.12 0.11 -68.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602587499.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.149 kcal (2) G-P(sol) polarization free energy of solvation -68.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds