Wall clock time and date at job start Mon Mar 30 2020 02:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47152 * 2 1 4 4 C 1.52999 * 109.46964 * 240.00458 * 2 1 3 5 5 C 1.50702 * 109.47309 * 64.99915 * 4 2 1 6 6 H 1.07995 * 119.99940 * 0.02562 * 5 4 2 7 7 C 1.37873 * 119.99853 * 180.02562 * 5 4 2 8 8 N 1.31517 * 120.00478 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99955 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47049 * 89.99636 * 9 7 5 11 11 H 1.48493 * 109.47405 * 209.99926 * 9 7 5 12 12 H 1.48508 * 109.47042 * 330.00080 * 9 7 5 13 13 C 1.52994 * 109.47339 * 120.00239 * 2 1 3 14 14 N 1.46501 * 109.47317 * 295.00064 * 13 2 1 15 15 C 1.40797 * 120.00347 * 180.02562 * 14 13 2 16 16 C 1.40224 * 126.06716 * 359.97229 * 15 14 13 17 17 N 1.30854 * 108.36725 * 179.97438 * 16 15 14 18 18 N 1.40080 * 108.36141 * 0.02562 * 17 16 15 19 19 C 1.46501 * 126.07202 * 179.97438 * 18 17 16 20 20 H 1.08996 * 109.47081 * 335.02825 * 19 18 17 21 21 C 1.53005 * 109.46948 * 215.02457 * 19 18 17 22 22 C 1.53001 * 109.46810 * 95.02596 * 19 18 17 23 23 C 1.53000 * 117.50223 * 300.00004 * 22 19 18 24 24 C 1.52997 * 117.49889 * 231.37265 * 22 19 18 25 25 C 1.35706 * 126.07083 * 180.25939 * 15 14 13 26 26 H 1.08996 * 109.47160 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46874 * 299.99796 * 1 2 3 28 28 H 1.09002 * 109.47478 * 59.99706 * 1 2 3 29 29 H 1.09001 * 109.47345 * 184.99944 * 4 2 1 30 30 H 1.09005 * 109.46872 * 304.99487 * 4 2 1 31 31 H 0.96996 * 120.00156 * 179.97438 * 8 7 5 32 32 H 1.09003 * 109.47214 * 174.99949 * 13 2 1 33 33 H 1.09000 * 109.47307 * 55.00268 * 13 2 1 34 34 H 0.97000 * 119.99926 * 0.02562 * 14 13 2 35 35 H 1.07997 * 125.81247 * 0.02562 * 16 15 14 36 36 H 1.08997 * 109.46835 * 180.02562 * 21 19 18 37 37 H 1.08994 * 109.46791 * 300.00153 * 21 19 18 38 38 H 1.08997 * 109.46713 * 60.00259 * 21 19 18 39 39 H 1.09002 * 115.55911 * 85.68693 * 22 19 18 40 40 H 1.08990 * 117.49990 * 145.01974 * 23 22 19 41 41 H 1.09004 * 117.49237 * 359.97438 * 23 22 19 42 42 H 1.08999 * 117.49685 * 0.02562 * 24 22 19 43 43 H 1.08997 * 117.50044 * 214.98097 * 24 22 19 44 44 H 1.08003 * 126.22137 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6412 0.0572 -2.4766 6 1 1.0806 0.9747 -2.3756 7 6 1.9922 -0.4020 -3.7283 8 7 2.6745 -1.5196 -3.8514 9 14 1.4974 0.5624 -5.2497 10 1 2.5627 1.5420 -5.5829 11 1 1.3100 -0.3717 -6.3887 12 1 0.2262 1.2838 -4.9867 13 6 2.0400 -0.7213 1.2491 14 7 1.6525 0.0352 2.4424 15 6 2.0119 -0.4332 3.7205 16 6 2.7355 -1.6018 3.9981 17 7 2.8741 -1.7026 5.2954 18 7 2.2443 -0.6034 5.8932 19 6 2.1650 -0.3312 7.3305 20 1 2.2561 -1.2664 7.8829 21 6 0.8195 0.3224 7.6523 22 6 3.2998 0.6122 7.7343 23 6 4.7338 0.1372 7.4913 24 6 4.1782 0.1957 8.9157 25 6 1.7149 0.1632 4.9028 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 3.1263 -0.7994 -1.2057 30 1 1.6053 -1.7198 -1.2952 31 1 2.9211 -1.8429 -4.7320 32 1 3.1264 -0.7995 1.2055 33 1 1.6055 -1.7198 1.2950 34 1 1.1483 0.8589 2.3518 35 1 3.1144 -2.2994 3.2659 36 1 0.7607 0.5253 8.7216 37 1 0.7285 1.2575 7.0998 38 1 0.0111 -0.3498 7.3646 39 1 3.0941 1.6754 7.6103 40 1 5.4713 0.8878 7.2075 41 1 4.8686 -0.8478 7.0442 42 1 3.9478 -0.7506 9.4051 43 1 4.5504 0.9849 9.5690 44 1 1.1615 1.0814 5.0331 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602620706.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:32 Heat of formation + Delta-G solvation = 86.696724 kcal Electronic energy + Delta-G solvation = -20917.160806 eV Core-core repulsion = 17871.427762 eV Total energy + Delta-G solvation = -3045.733044 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.96312 -38.08209 -36.59230 -34.04908 -33.18816 -31.84851 -29.60448 -28.42101 -26.78107 -25.37073 -24.30304 -22.72924 -22.61963 -21.90956 -20.20228 -19.97393 -18.95288 -17.16857 -16.37371 -15.90471 -15.49517 -15.07767 -14.61579 -14.46055 -14.33482 -14.09629 -13.85283 -13.04955 -12.84668 -12.62143 -12.47937 -12.27561 -12.00525 -11.97354 -11.81478 -11.53003 -11.43910 -10.90493 -10.85015 -10.70978 -10.59432 -10.48213 -10.36443 -10.25583 -9.93022 -9.52577 -9.23617 -9.13252 -8.99694 -8.33785 -6.72806 -5.98452 -3.99946 2.06840 2.48318 3.24287 3.32592 3.39124 3.41775 3.59017 4.00894 4.19346 4.47140 4.49236 4.65944 4.67214 4.85583 4.97839 5.05440 5.20978 5.31383 5.34107 5.37433 5.54318 5.60044 5.67323 5.69833 5.75669 5.82854 5.86904 5.93704 5.99667 6.04882 6.33466 6.45048 6.55529 6.65455 6.94854 7.08414 7.12228 7.22231 7.67475 7.78805 7.82888 7.92623 8.01258 8.33071 8.44188 9.06070 9.63519 11.13009 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.039852 B = 0.002696 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.436497 B =10383.587651 C =10609.650973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.095 4.095 3 H 0.060 0.940 4 C 0.029 3.971 5 C -0.514 4.514 6 H 0.056 0.944 7 C 0.056 3.944 8 N -0.896 5.896 9 Si 0.890 3.110 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.140 3.860 14 N -0.742 5.742 15 C 0.077 3.923 16 C 0.009 3.991 17 N -0.280 5.280 18 N -0.366 5.366 19 C 0.200 3.800 20 H 0.096 0.904 21 C -0.158 4.158 22 C -0.175 4.175 23 C -0.165 4.165 24 C -0.170 4.170 25 C -0.044 4.044 26 H 0.045 0.955 27 H 0.030 0.970 28 H 0.061 0.939 29 H 0.017 0.983 30 H 0.018 0.982 31 H 0.260 0.740 32 H 0.048 0.952 33 H 0.047 0.953 34 H 0.394 0.606 35 H 0.178 0.822 36 H 0.078 0.922 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.108 0.892 40 H 0.093 0.907 41 H 0.102 0.898 42 H 0.096 0.904 43 H 0.096 0.904 44 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.241 4.069 24.713 25.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.113 4.113 3 H 0.078 0.922 4 C -0.008 4.008 5 C -0.553 4.553 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.535 5.535 9 Si 0.718 3.282 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 C 0.016 3.984 14 N -0.379 5.379 15 C -0.032 4.032 16 C -0.180 4.180 17 N -0.103 5.103 18 N -0.155 5.155 19 C 0.098 3.902 20 H 0.114 0.886 21 C -0.217 4.217 22 C -0.194 4.194 23 C -0.202 4.202 24 C -0.208 4.208 25 C -0.191 4.191 26 H 0.064 0.936 27 H 0.049 0.951 28 H 0.080 0.920 29 H 0.035 0.965 30 H 0.037 0.963 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.228 0.772 35 H 0.195 0.805 36 H 0.097 0.903 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.126 0.874 40 H 0.112 0.888 41 H 0.120 0.880 42 H 0.114 0.886 43 H 0.114 0.886 44 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -0.629 3.126 25.520 25.718 hybrid contribution -0.704 1.351 -1.752 2.322 sum -1.333 4.477 23.768 24.222 Atomic orbital electron populations 1.21698 0.96083 1.00961 0.99991 1.21400 0.95499 0.99728 0.94715 0.92158 1.19083 0.96246 0.95537 0.89939 1.21207 1.34824 1.08273 0.90965 0.92601 1.25015 0.95325 0.95075 0.99098 1.69960 1.39001 1.21095 1.23442 0.86629 0.78891 0.79805 0.82872 1.20741 1.21292 1.19938 1.21396 0.98388 0.94731 0.83877 1.44088 1.64606 1.28506 1.00731 1.17827 1.02856 0.96050 0.86427 1.23538 1.02647 0.98570 0.93209 1.77107 1.18233 1.07012 1.07925 1.48199 1.44137 1.18202 1.04932 1.20585 0.94509 0.98337 0.76769 0.88559 1.22115 0.95273 1.01544 1.02726 1.22733 0.92434 0.99857 1.04372 1.22912 0.95298 1.03593 0.98433 1.23000 1.03447 1.03079 0.91234 1.21437 1.09401 1.01136 0.87113 0.93602 0.95076 0.92032 0.96488 0.96349 0.93038 0.93406 0.93464 0.77212 0.80507 0.90280 0.91493 0.91417 0.87365 0.88847 0.87996 0.88577 0.88557 0.82114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.38 8.88 37.16 0.33 -2.05 16 2 C -0.09 -1.86 2.37 -90.62 -0.22 -2.08 16 3 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 4 C 0.03 0.74 4.45 -27.88 -0.12 0.61 16 5 C -0.51 -14.17 8.41 -34.44 -0.29 -14.46 16 6 H 0.06 1.50 7.06 -52.49 -0.37 1.13 16 7 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -26.74 13.29 55.43 0.74 -26.01 16 9 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 13 C 0.14 2.41 5.02 -4.04 -0.02 2.39 16 14 N -0.74 -11.16 5.53 -58.80 -0.33 -11.48 16 15 C 0.08 1.13 6.96 -83.90 -0.58 0.55 16 16 C 0.01 0.13 11.34 -17.22 -0.20 -0.07 16 17 N -0.28 -4.11 12.57 30.70 0.39 -3.73 16 18 N -0.37 -4.51 3.44 -54.50 -0.19 -4.70 16 19 C 0.20 1.80 3.52 -67.93 -0.24 1.57 16 20 H 0.10 0.86 7.90 -51.93 -0.41 0.45 16 21 C -0.16 -1.07 8.82 37.16 0.33 -0.74 16 22 C -0.17 -1.44 5.36 -90.62 -0.49 -1.93 16 23 C -0.17 -1.53 10.12 -26.73 -0.27 -1.80 16 24 C -0.17 -1.19 10.18 -26.73 -0.27 -1.46 16 25 C -0.04 -0.56 10.65 -16.62 -0.18 -0.73 16 26 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 27 H 0.03 0.48 7.18 -51.93 -0.37 0.11 16 28 H 0.06 1.21 6.95 -51.93 -0.36 0.85 16 29 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 32 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.39 5.47 7.78 -40.82 -0.32 5.15 16 35 H 0.18 2.46 7.90 -52.49 -0.41 2.05 16 36 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.43 7.17 -51.93 -0.37 0.06 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.11 0.84 8.11 -51.93 -0.42 0.42 16 40 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.10 0.61 8.05 -51.93 -0.42 0.19 16 43 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.16 1.64 7.28 -52.48 -0.38 1.26 16 LS Contribution 360.46 15.07 5.43 5.43 Total: -1.00 -30.59 360.46 -8.92 -39.51 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -7.63 Total: 3.17 kcal Atomic # 6 Polarization: -16.40 SS G_CDS: -2.31 Total: -18.71 kcal Atomic # 7 Polarization: -46.52 SS G_CDS: 0.61 Total: -45.91 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.59 -8.92 -39.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602620706.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.204 kcal (2) G-P(sol) polarization free energy of solvation -30.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds