Wall clock time and date at job start Mon Mar 30 2020 02:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47152 * 2 1 4 4 C 1.52999 * 109.46964 * 240.00458 * 2 1 3 5 5 C 1.50702 * 109.47309 * 64.99915 * 4 2 1 6 6 H 1.07995 * 119.99940 * 0.02562 * 5 4 2 7 7 C 1.37873 * 119.99853 * 180.02562 * 5 4 2 8 8 N 1.31517 * 120.00478 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99955 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47049 * 89.99636 * 9 7 5 11 11 H 1.48493 * 109.47405 * 209.99926 * 9 7 5 12 12 H 1.48508 * 109.47042 * 330.00080 * 9 7 5 13 13 C 1.52994 * 109.47339 * 120.00239 * 2 1 3 14 14 N 1.46501 * 109.47317 * 295.00064 * 13 2 1 15 15 C 1.40797 * 120.00347 * 180.02562 * 14 13 2 16 16 C 1.40224 * 126.06716 * 359.97229 * 15 14 13 17 17 N 1.30854 * 108.36725 * 179.97438 * 16 15 14 18 18 N 1.40080 * 108.36141 * 0.02562 * 17 16 15 19 19 C 1.46501 * 126.07202 * 179.97438 * 18 17 16 20 20 H 1.08996 * 109.47081 * 335.02825 * 19 18 17 21 21 C 1.53005 * 109.46948 * 215.02457 * 19 18 17 22 22 C 1.53001 * 109.46810 * 95.02596 * 19 18 17 23 23 C 1.53000 * 117.50223 * 300.00004 * 22 19 18 24 24 C 1.52997 * 117.49889 * 231.37265 * 22 19 18 25 25 C 1.35706 * 126.07083 * 180.25939 * 15 14 13 26 26 H 1.08996 * 109.47160 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46874 * 299.99796 * 1 2 3 28 28 H 1.09002 * 109.47478 * 59.99706 * 1 2 3 29 29 H 1.09001 * 109.47345 * 184.99944 * 4 2 1 30 30 H 1.09005 * 109.46872 * 304.99487 * 4 2 1 31 31 H 0.96996 * 120.00156 * 179.97438 * 8 7 5 32 32 H 1.09003 * 109.47214 * 174.99949 * 13 2 1 33 33 H 1.09000 * 109.47307 * 55.00268 * 13 2 1 34 34 H 0.97000 * 119.99926 * 0.02562 * 14 13 2 35 35 H 1.07997 * 125.81247 * 0.02562 * 16 15 14 36 36 H 1.08997 * 109.46835 * 180.02562 * 21 19 18 37 37 H 1.08994 * 109.46791 * 300.00153 * 21 19 18 38 38 H 1.08997 * 109.46713 * 60.00259 * 21 19 18 39 39 H 1.09002 * 115.55911 * 85.68693 * 22 19 18 40 40 H 1.08990 * 117.49990 * 145.01974 * 23 22 19 41 41 H 1.09004 * 117.49237 * 359.97438 * 23 22 19 42 42 H 1.08999 * 117.49685 * 0.02562 * 24 22 19 43 43 H 1.08997 * 117.50044 * 214.98097 * 24 22 19 44 44 H 1.08003 * 126.22137 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6412 0.0572 -2.4766 6 1 1.0806 0.9747 -2.3756 7 6 1.9922 -0.4020 -3.7283 8 7 2.6745 -1.5196 -3.8514 9 14 1.4974 0.5624 -5.2497 10 1 2.5627 1.5420 -5.5829 11 1 1.3100 -0.3717 -6.3887 12 1 0.2262 1.2838 -4.9867 13 6 2.0400 -0.7213 1.2491 14 7 1.6525 0.0352 2.4424 15 6 2.0119 -0.4332 3.7205 16 6 2.7355 -1.6018 3.9981 17 7 2.8741 -1.7026 5.2954 18 7 2.2443 -0.6034 5.8932 19 6 2.1650 -0.3312 7.3305 20 1 2.2561 -1.2664 7.8829 21 6 0.8195 0.3224 7.6523 22 6 3.2998 0.6122 7.7343 23 6 4.7338 0.1372 7.4913 24 6 4.1782 0.1957 8.9157 25 6 1.7149 0.1632 4.9028 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 3.1263 -0.7994 -1.2057 30 1 1.6053 -1.7198 -1.2952 31 1 2.9211 -1.8429 -4.7320 32 1 3.1264 -0.7995 1.2055 33 1 1.6055 -1.7198 1.2950 34 1 1.1483 0.8589 2.3518 35 1 3.1144 -2.2994 3.2659 36 1 0.7607 0.5253 8.7216 37 1 0.7285 1.2575 7.0998 38 1 0.0111 -0.3498 7.3646 39 1 3.0941 1.6754 7.6103 40 1 5.4713 0.8878 7.2075 41 1 4.8686 -0.8478 7.0442 42 1 3.9478 -0.7506 9.4051 43 1 4.5504 0.9849 9.5690 44 1 1.1615 1.0814 5.0331 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602620706.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:31 Heat of formation + Delta-G solvation = 69.916861 kcal Electronic energy + Delta-G solvation = -20917.888435 eV Core-core repulsion = 17871.427762 eV Total energy + Delta-G solvation = -3046.460673 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.98655 -38.84643 -38.04455 -35.46401 -34.37274 -33.53324 -30.58188 -29.67292 -28.53568 -26.82427 -25.09725 -24.54617 -23.27530 -22.79300 -21.33396 -21.04556 -20.34412 -18.49312 -18.15900 -16.71227 -16.53104 -16.29598 -16.14561 -15.92001 -15.38337 -15.25409 -14.95084 -14.33129 -14.26099 -13.76332 -13.65778 -13.41009 -13.31654 -13.16187 -12.78543 -12.72088 -12.64203 -12.44077 -12.23491 -12.21683 -11.97457 -11.64654 -11.61825 -11.33343 -11.14239 -11.11656 -10.97875 -10.78595 -10.51606 -10.14738 -8.15651 -7.86795 -6.24642 1.03501 1.41928 1.42703 1.53443 1.59786 2.11631 2.43243 2.83807 2.95512 3.18207 3.48706 3.80797 3.97049 4.01258 4.10116 4.17756 4.21672 4.27364 4.29527 4.42074 4.46906 4.69988 4.75923 4.81580 4.85128 4.89438 4.92240 4.97712 4.99380 5.04130 5.14276 5.21860 5.25395 5.28488 5.37112 5.49897 5.53075 5.58622 5.82342 5.90090 6.27143 6.30246 6.59469 6.83804 6.91655 7.22521 7.43619 8.96512 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.039852 B = 0.002696 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.436497 B =10383.587651 C =10609.650973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.082 4.082 3 H 0.062 0.938 4 C 0.033 3.967 5 C -0.527 4.527 6 H 0.063 0.937 7 C -0.003 4.003 8 N -0.936 5.936 9 Si 0.961 3.039 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.262 1.262 13 C 0.157 3.843 14 N -0.738 5.738 15 C 0.050 3.950 16 C -0.012 4.012 17 N -0.303 5.303 18 N -0.358 5.358 19 C 0.190 3.810 20 H 0.094 0.906 21 C -0.152 4.152 22 C -0.173 4.173 23 C -0.189 4.189 24 C -0.147 4.147 25 C -0.024 4.024 26 H 0.038 0.962 27 H 0.065 0.935 28 H 0.046 0.954 29 H -0.011 1.011 30 H -0.007 1.007 31 H 0.261 0.739 32 H 0.035 0.965 33 H 0.041 0.959 34 H 0.402 0.598 35 H 0.174 0.826 36 H 0.103 0.897 37 H 0.074 0.926 38 H 0.060 0.940 39 H 0.120 0.880 40 H 0.092 0.908 41 H 0.077 0.923 42 H 0.103 0.897 43 H 0.115 0.885 44 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.663 6.303 26.554 27.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.101 4.101 3 H 0.080 0.920 4 C -0.005 4.005 5 C -0.565 4.565 6 H 0.082 0.918 7 C -0.201 4.201 8 N -0.577 5.577 9 Si 0.786 3.214 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.186 1.186 13 C 0.032 3.968 14 N -0.377 5.377 15 C -0.058 4.058 16 C -0.199 4.199 17 N -0.127 5.127 18 N -0.146 5.146 19 C 0.089 3.911 20 H 0.112 0.888 21 C -0.210 4.210 22 C -0.192 4.192 23 C -0.226 4.226 24 C -0.185 4.185 25 C -0.172 4.172 26 H 0.057 0.943 27 H 0.084 0.916 28 H 0.065 0.935 29 H 0.007 0.993 30 H 0.011 0.989 31 H 0.070 0.930 32 H 0.053 0.947 33 H 0.059 0.941 34 H 0.237 0.763 35 H 0.191 0.809 36 H 0.121 0.879 37 H 0.093 0.907 38 H 0.080 0.920 39 H 0.138 0.862 40 H 0.111 0.889 41 H 0.095 0.905 42 H 0.121 0.879 43 H 0.133 0.867 44 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -2.055 5.368 27.407 28.003 hybrid contribution -0.224 0.640 -2.183 2.286 sum -2.279 6.008 25.224 26.030 Atomic orbital electron populations 1.21604 0.94556 1.00835 1.00929 1.21163 0.96618 0.99077 0.93272 0.91997 1.18975 0.94386 0.94760 0.92345 1.21631 1.34413 1.08554 0.91933 0.91838 1.25952 0.95344 0.96083 1.02683 1.70103 1.40389 1.22906 1.24258 0.85511 0.79024 0.78337 0.78565 1.20017 1.21117 1.18600 1.20988 0.97455 0.94381 0.83981 1.43753 1.65181 1.28623 1.00120 1.17969 1.04375 0.96674 0.86759 1.23617 1.03480 0.99230 0.93545 1.77076 1.19267 1.08438 1.07897 1.48616 1.42561 1.17183 1.06230 1.20974 0.96413 0.98893 0.74804 0.88750 1.22116 0.93175 1.01313 1.04429 1.22761 0.91274 1.00099 1.05039 1.22850 0.96434 1.02464 1.00902 1.23087 1.01280 1.03875 0.90218 1.21897 1.07724 1.01287 0.86341 0.94270 0.91610 0.93495 0.99290 0.98909 0.92981 0.94664 0.94113 0.76283 0.80888 0.87880 0.90724 0.92047 0.86242 0.88903 0.90473 0.87907 0.86693 0.79056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.34 8.88 71.98 0.64 -3.70 16 2 C -0.08 -3.26 2.37 -10.80 -0.03 -3.28 16 3 H 0.06 2.43 8.14 -2.38 -0.02 2.41 16 4 C 0.03 1.71 4.45 29.85 0.13 1.84 16 5 C -0.53 -29.40 8.41 25.60 0.22 -29.18 16 6 H 0.06 3.37 7.06 -2.91 -0.02 3.35 16 7 C 0.00 -0.20 5.46 84.65 0.46 0.27 16 8 N -0.94 -57.27 13.29 21.45 0.28 -56.99 16 9 Si 0.96 44.26 29.54 68.60 2.03 46.29 16 10 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 11 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 12 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 13 C 0.16 5.48 5.02 86.38 0.43 5.91 16 14 N -0.74 -21.42 5.53 -339.93 -1.88 -23.30 16 15 C 0.05 1.42 6.96 37.60 0.26 1.69 16 16 C -0.01 -0.36 11.34 85.32 0.97 0.61 16 17 N -0.30 -8.94 12.57 -56.78 -0.71 -9.65 16 18 N -0.36 -8.32 3.44 -326.33 -1.12 -9.44 16 19 C 0.19 3.01 3.52 44.99 0.16 3.17 16 20 H 0.09 1.54 7.90 -2.39 -0.02 1.52 16 21 C -0.15 -1.54 8.82 71.98 0.63 -0.91 16 22 C -0.17 -2.44 5.36 -10.79 -0.06 -2.49 16 23 C -0.19 -3.35 10.12 30.60 0.31 -3.04 16 24 C -0.15 -1.69 10.18 30.60 0.31 -1.38 16 25 C -0.02 -0.56 10.65 83.46 0.89 0.33 16 26 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.07 1.88 7.18 -2.39 -0.02 1.86 16 28 H 0.05 1.79 6.95 -2.39 -0.02 1.78 16 29 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 30 H -0.01 -0.42 8.14 -2.38 -0.02 -0.44 16 31 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 32 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.40 10.27 7.78 -92.71 -0.72 9.55 16 35 H 0.17 5.15 7.90 -2.91 -0.02 5.13 16 36 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.07 0.66 7.17 -2.39 -0.02 0.65 16 38 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.12 1.45 8.11 -2.39 -0.02 1.44 16 40 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 42 H 0.10 1.06 8.05 -2.39 -0.02 1.04 16 43 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.19 3.16 7.28 -2.91 -0.02 3.14 16 Total: -1.00 -67.29 360.46 4.17 -63.12 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: 0.24 Total: 20.16 kcal Atomic # 6 Polarization: -35.52 SS G_CDS: 5.33 Total: -30.18 kcal Atomic # 7 Polarization: -95.95 SS G_CDS: -3.43 Total: -99.38 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -67.29 4.17 -63.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602620706.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.036 kcal (2) G-P(sol) polarization free energy of solvation -67.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds