Wall clock time and date at job start Mon Mar 30 2020 02:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.53002 * 109.47233 * 120.00174 * 2 1 3 5 5 C 1.50703 * 109.46970 * 294.99898 * 4 2 1 6 6 H 1.08002 * 119.99817 * 359.97438 * 5 4 2 7 7 C 1.37870 * 120.00164 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00141 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 119.99889 * 359.97438 * 7 5 4 10 10 H 1.48496 * 109.47364 * 89.99969 * 9 7 5 11 11 H 1.48507 * 109.46859 * 210.00165 * 9 7 5 12 12 H 1.48503 * 109.47014 * 329.99390 * 9 7 5 13 13 C 1.52997 * 109.47060 * 239.99831 * 2 1 3 14 14 N 1.46905 * 109.47150 * 64.99960 * 13 2 1 15 15 C 1.46848 * 110.99586 * 66.04973 * 14 13 2 16 16 C 1.53041 * 109.51872 * 185.83988 * 15 14 13 17 17 C 1.53117 * 109.27708 * 300.81629 * 16 15 14 18 18 C 1.53120 * 109.16076 * 57.65839 * 17 16 15 19 19 C 1.46850 * 111.00025 * 190.25841 * 14 13 2 20 20 H 1.09000 * 109.46048 * 294.17428 * 19 14 13 21 21 C 1.50698 * 109.46267 * 54.14364 * 19 14 13 22 22 C 1.39869 * 125.89821 * 204.99622 * 21 19 14 23 23 C 1.35312 * 107.91812 * 180.02562 * 22 21 19 24 24 N 1.34948 * 107.75037 * 359.97438 * 23 22 21 25 25 H 0.97001 * 126.03770 * 179.97438 * 24 23 22 26 26 N 1.30841 * 125.89869 * 24.69683 * 21 19 14 27 27 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 28 28 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 30 30 H 1.09000 * 109.47059 * 54.99596 * 4 2 1 31 31 H 1.08996 * 109.47073 * 174.99688 * 4 2 1 32 32 H 0.97001 * 120.00015 * 179.97438 * 8 7 5 33 33 H 1.09001 * 109.47630 * 185.00216 * 13 2 1 34 34 H 1.09004 * 109.47346 * 305.00346 * 13 2 1 35 35 H 1.09002 * 109.46322 * 305.84913 * 15 14 13 36 36 H 1.08996 * 109.46604 * 65.82354 * 15 14 13 37 37 H 1.08999 * 109.50565 * 60.76222 * 16 15 14 38 38 H 1.09004 * 109.49818 * 180.83894 * 16 15 14 39 39 H 1.09011 * 109.51705 * 177.56191 * 17 16 15 40 40 H 1.09001 * 109.52278 * 297.74882 * 17 16 15 41 41 H 1.08999 * 109.49947 * 62.28274 * 18 17 16 42 42 H 1.09000 * 109.50029 * 182.35934 * 18 17 16 43 43 H 1.07997 * 126.03777 * 359.97438 * 22 21 19 44 44 H 1.08005 * 126.12348 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6414 0.0570 2.4766 6 1 1.0807 0.9746 2.3756 7 6 1.9924 -0.4022 3.7283 8 7 1.6449 0.2773 4.7993 9 14 2.9615 -1.9896 3.9029 10 1 4.4151 -1.6873 3.8788 11 1 2.6130 -2.6432 5.1900 12 1 2.6264 -2.9003 2.7787 13 6 2.0400 -0.7213 -1.2492 14 7 1.6513 0.0374 -2.4457 15 6 2.3339 1.3368 -2.4895 16 6 1.7981 2.1565 -3.6656 17 6 2.0386 1.3885 -4.9682 18 6 1.3582 0.0198 -4.8776 19 6 1.9066 -0.7380 -3.6664 20 1 2.9801 -0.8847 -3.7855 21 6 1.2253 -2.0781 -3.5617 22 6 1.6019 -3.2444 -4.2356 23 6 0.7442 -4.2277 -3.8773 24 7 -0.1434 -3.7024 -3.0070 25 1 -0.8758 -4.1764 -2.5830 26 7 0.1827 -2.3528 -2.8206 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.6054 -1.7198 1.2951 31 1 3.1263 -0.7995 1.2055 32 1 1.8915 -0.0461 5.6800 33 1 3.1263 -0.7996 -1.2056 34 1 1.6053 -1.7198 -1.2952 35 1 2.1513 1.8745 -1.5590 36 1 3.4054 1.1803 -2.6141 37 1 0.7293 2.3253 -3.5346 38 1 2.3155 3.1150 -3.7067 39 1 1.6197 1.9490 -5.8041 40 1 3.1097 1.2536 -5.1191 41 1 0.2824 0.1549 -4.7656 42 1 1.5611 -0.5483 -5.7854 43 1 2.4304 -3.3426 -4.9215 44 1 0.7665 -5.2500 -4.2248 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602661154.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:12 Heat of formation + Delta-G solvation = 64.352482 kcal Electronic energy + Delta-G solvation = -22475.092702 eV Core-core repulsion = 19428.390739 eV Total energy + Delta-G solvation = -3046.701963 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.24264 -38.90903 -35.55563 -33.07115 -32.54572 -31.39587 -29.89787 -29.61584 -27.42974 -25.94914 -23.79491 -23.45885 -21.79338 -21.31849 -19.99607 -19.10388 -18.71571 -18.09447 -16.69922 -15.73085 -14.87095 -14.68961 -14.39043 -14.32811 -14.08555 -13.58349 -13.53246 -13.46672 -13.09988 -13.03486 -12.56938 -12.17289 -12.08008 -11.57930 -11.44830 -11.20685 -10.87449 -10.76799 -10.64927 -10.60659 -10.45010 -10.40023 -10.12612 -9.79161 -9.48182 -9.26337 -9.14086 -8.93846 -8.70660 -8.44606 -7.89999 -5.95354 -3.91032 1.95569 2.79104 2.93794 3.35133 3.42115 3.47363 4.07566 4.52795 4.56578 4.86496 4.89028 4.99729 5.08075 5.30309 5.37330 5.38664 5.48331 5.66368 5.69976 5.71229 5.76485 5.88473 5.92652 5.94324 5.96149 6.10667 6.19144 6.22154 6.29333 6.43288 6.54052 6.60351 6.63976 6.80878 7.03881 7.23782 7.27152 7.32233 7.40167 7.42562 7.54685 7.65347 7.82997 7.91841 8.66167 9.11479 9.68358 11.18294 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.016881 B = 0.005384 C = 0.004447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.293247 B = 5199.391857 C = 6294.499786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.068 4.068 3 H 0.059 0.941 4 C -0.009 4.009 5 C -0.507 4.507 6 H 0.074 0.926 7 C 0.064 3.936 8 N -0.907 5.907 9 Si 0.876 3.124 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.267 1.267 13 C 0.057 3.943 14 N -0.519 5.519 15 C 0.052 3.948 16 C -0.117 4.117 17 C -0.119 4.119 18 C -0.103 4.103 19 C 0.165 3.835 20 H 0.053 0.947 21 C 0.080 3.920 22 C -0.272 4.272 23 C 0.051 3.949 24 N -0.483 5.483 25 H 0.438 0.562 26 N -0.247 5.247 27 H 0.044 0.956 28 H 0.038 0.962 29 H 0.052 0.948 30 H 0.013 0.987 31 H 0.005 0.995 32 H 0.261 0.739 33 H 0.020 0.980 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.028 0.972 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.058 0.942 41 H 0.073 0.927 42 H 0.064 0.936 43 H 0.143 0.857 44 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.008 -5.354 -22.693 23.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.087 4.087 3 H 0.077 0.923 4 C -0.046 4.046 5 C -0.545 4.545 6 H 0.092 0.908 7 C -0.136 4.136 8 N -0.547 5.547 9 Si 0.704 3.296 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.192 1.192 13 C -0.070 4.070 14 N -0.244 5.244 15 C -0.076 4.076 16 C -0.155 4.155 17 C -0.156 4.156 18 C -0.141 4.141 19 C 0.055 3.945 20 H 0.071 0.929 21 C -0.088 4.088 22 C -0.302 4.302 23 C -0.097 4.097 24 N -0.190 5.190 25 H 0.281 0.719 26 N -0.070 5.070 27 H 0.063 0.937 28 H 0.057 0.943 29 H 0.071 0.929 30 H 0.031 0.969 31 H 0.023 0.977 32 H 0.071 0.929 33 H 0.038 0.962 34 H 0.097 0.903 35 H 0.105 0.895 36 H 0.046 0.954 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.091 0.909 42 H 0.083 0.917 43 H 0.161 0.839 44 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -1.325 -4.824 -21.653 22.223 hybrid contribution 1.721 -1.832 -0.111 2.516 sum 0.396 -6.656 -21.764 22.762 Atomic orbital electron populations 1.21496 0.95081 1.00588 1.00177 1.20983 0.96513 0.98734 0.92472 0.92304 1.19607 0.95133 0.96186 0.93712 1.21151 1.34920 1.09378 0.89063 0.90803 1.25013 0.95785 0.96797 0.95990 1.69918 1.47515 1.39298 0.97935 0.86829 0.80635 0.84778 0.77328 1.20463 1.21536 1.19204 1.22418 0.96725 0.98279 0.89564 1.61863 1.58328 1.03211 1.00960 1.22164 0.95153 0.90657 0.99620 1.21601 1.02223 0.97733 0.93916 1.21577 1.00233 0.95911 0.97916 1.21552 1.01344 0.95373 0.95873 1.19963 0.95835 0.86853 0.91890 0.92936 1.22157 0.94945 0.95818 0.95882 1.21340 1.05983 0.92520 1.10353 1.22499 0.92518 0.99726 0.94922 1.46586 1.26707 1.09201 1.36555 0.71899 1.77655 1.16561 0.91327 1.21476 0.93663 0.94268 0.92876 0.96895 0.97666 0.92941 0.96215 0.90335 0.89540 0.95360 0.91005 0.91790 0.91883 0.92346 0.90873 0.91697 0.83917 0.81100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.43 8.89 37.16 0.33 -2.10 16 2 C -0.07 -1.45 2.26 -90.62 -0.21 -1.65 16 3 H 0.06 1.27 6.23 -51.93 -0.32 0.94 16 4 C -0.01 -0.21 3.52 -27.88 -0.10 -0.31 16 5 C -0.51 -14.83 8.96 -34.44 -0.31 -15.13 16 6 H 0.07 2.31 7.30 -52.49 -0.38 1.93 16 7 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 8 N -0.91 -28.65 13.96 55.43 0.77 -27.88 16 9 Si 0.88 22.56 27.47 -169.99 -4.67 17.89 16 10 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 11 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 12 H -0.27 -6.70 6.54 56.52 0.37 -6.33 16 13 C 0.06 1.05 4.01 -3.82 -0.02 1.04 16 14 N -0.52 -8.05 3.83 -228.07 -0.87 -8.92 16 15 C 0.05 0.73 5.30 -3.83 -0.02 0.71 16 16 C -0.12 -1.33 6.09 -26.65 -0.16 -1.49 16 17 C -0.12 -1.18 6.00 -26.61 -0.16 -1.34 16 18 C -0.10 -1.14 5.36 -26.65 -0.14 -1.29 16 19 C 0.17 2.21 2.32 -68.88 -0.16 2.05 16 20 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 21 C 0.08 1.12 5.02 -82.41 -0.41 0.70 16 22 C -0.27 -3.11 10.74 -40.01 -0.43 -3.54 16 23 C 0.05 0.49 11.99 -17.22 -0.21 0.29 16 24 N -0.48 -5.57 7.36 30.45 0.22 -5.35 16 25 H 0.44 3.79 8.96 -182.61 -1.64 2.15 16 26 N -0.25 -3.79 10.91 33.67 0.37 -3.43 16 27 H 0.04 0.88 7.75 -51.93 -0.40 0.48 16 28 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.05 1.21 6.95 -51.93 -0.36 0.85 16 30 H 0.01 0.33 7.20 -51.93 -0.37 -0.04 16 31 H 0.01 0.13 7.57 -51.93 -0.39 -0.27 16 32 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 33 H 0.02 0.37 8.12 -51.93 -0.42 -0.06 16 34 H 0.08 1.52 5.55 -51.93 -0.29 1.24 16 35 H 0.09 1.34 6.13 -51.93 -0.32 1.02 16 36 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 44 H 0.17 0.95 8.06 -52.48 -0.42 0.53 16 LS Contribution 339.67 15.07 5.12 5.12 Total: -1.00 -33.54 339.67 -9.87 -43.41 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -8.72 Total: -0.61 kcal Atomic # 6 Polarization: -18.15 SS G_CDS: -2.09 Total: -20.24 kcal Atomic # 7 Polarization: -46.06 SS G_CDS: 0.49 Total: -45.57 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -4.67 Total: 17.89 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.54 -9.87 -43.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602661154.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.758 kcal (2) G-P(sol) polarization free energy of solvation -33.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds