Wall clock time and date at job start Mon Mar 30 2020 02:03:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.53002 * 109.47233 * 120.00174 * 2 1 3 5 5 C 1.50703 * 109.46970 * 294.99898 * 4 2 1 6 6 H 1.08002 * 119.99817 * 359.97438 * 5 4 2 7 7 C 1.37870 * 120.00164 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00141 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 119.99889 * 359.97438 * 7 5 4 10 10 H 1.48496 * 109.47364 * 89.99969 * 9 7 5 11 11 H 1.48507 * 109.46859 * 210.00165 * 9 7 5 12 12 H 1.48503 * 109.47014 * 329.99390 * 9 7 5 13 13 C 1.52997 * 109.47060 * 239.99831 * 2 1 3 14 14 N 1.46905 * 109.47150 * 64.99960 * 13 2 1 15 15 C 1.46848 * 110.99586 * 66.04973 * 14 13 2 16 16 C 1.53041 * 109.51872 * 185.83988 * 15 14 13 17 17 C 1.53117 * 109.27708 * 300.81629 * 16 15 14 18 18 C 1.53120 * 109.16076 * 57.65839 * 17 16 15 19 19 C 1.46850 * 111.00025 * 190.25841 * 14 13 2 20 20 H 1.09000 * 109.46048 * 294.17428 * 19 14 13 21 21 C 1.50698 * 109.46267 * 54.14364 * 19 14 13 22 22 C 1.39869 * 125.89821 * 204.99622 * 21 19 14 23 23 C 1.35312 * 107.91812 * 180.02562 * 22 21 19 24 24 N 1.34948 * 107.75037 * 359.97438 * 23 22 21 25 25 H 0.97001 * 126.03770 * 179.97438 * 24 23 22 26 26 N 1.30841 * 125.89869 * 24.69683 * 21 19 14 27 27 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 28 28 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 30 30 H 1.09000 * 109.47059 * 54.99596 * 4 2 1 31 31 H 1.08996 * 109.47073 * 174.99688 * 4 2 1 32 32 H 0.97001 * 120.00015 * 179.97438 * 8 7 5 33 33 H 1.09001 * 109.47630 * 185.00216 * 13 2 1 34 34 H 1.09004 * 109.47346 * 305.00346 * 13 2 1 35 35 H 1.09002 * 109.46322 * 305.84913 * 15 14 13 36 36 H 1.08996 * 109.46604 * 65.82354 * 15 14 13 37 37 H 1.08999 * 109.50565 * 60.76222 * 16 15 14 38 38 H 1.09004 * 109.49818 * 180.83894 * 16 15 14 39 39 H 1.09011 * 109.51705 * 177.56191 * 17 16 15 40 40 H 1.09001 * 109.52278 * 297.74882 * 17 16 15 41 41 H 1.08999 * 109.49947 * 62.28274 * 18 17 16 42 42 H 1.09000 * 109.50029 * 182.35934 * 18 17 16 43 43 H 1.07997 * 126.03777 * 359.97438 * 22 21 19 44 44 H 1.08005 * 126.12348 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6414 0.0570 2.4766 6 1 1.0807 0.9746 2.3756 7 6 1.9924 -0.4022 3.7283 8 7 1.6449 0.2773 4.7993 9 14 2.9615 -1.9896 3.9029 10 1 4.4151 -1.6873 3.8788 11 1 2.6130 -2.6432 5.1900 12 1 2.6264 -2.9003 2.7787 13 6 2.0400 -0.7213 -1.2492 14 7 1.6513 0.0374 -2.4457 15 6 2.3339 1.3368 -2.4895 16 6 1.7981 2.1565 -3.6656 17 6 2.0386 1.3885 -4.9682 18 6 1.3582 0.0198 -4.8776 19 6 1.9066 -0.7380 -3.6664 20 1 2.9801 -0.8847 -3.7855 21 6 1.2253 -2.0781 -3.5617 22 6 1.6019 -3.2444 -4.2356 23 6 0.7442 -4.2277 -3.8773 24 7 -0.1434 -3.7024 -3.0070 25 1 -0.8758 -4.1764 -2.5830 26 7 0.1827 -2.3528 -2.8206 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.6054 -1.7198 1.2951 31 1 3.1263 -0.7995 1.2055 32 1 1.8915 -0.0461 5.6800 33 1 3.1263 -0.7996 -1.2056 34 1 1.6053 -1.7198 -1.2952 35 1 2.1513 1.8745 -1.5590 36 1 3.4054 1.1803 -2.6141 37 1 0.7293 2.3253 -3.5346 38 1 2.3155 3.1150 -3.7067 39 1 1.6197 1.9490 -5.8041 40 1 3.1097 1.2536 -5.1191 41 1 0.2824 0.1549 -4.7656 42 1 1.5611 -0.5483 -5.7854 43 1 2.4304 -3.3426 -4.9215 44 1 0.7665 -5.2500 -4.2248 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602661154.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:11 Heat of formation + Delta-G solvation = 42.494068 kcal Electronic energy + Delta-G solvation = -22476.040554 eV Core-core repulsion = 19428.390739 eV Total energy + Delta-G solvation = -3047.649815 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.13468 -40.02299 -37.18136 -34.72438 -33.80262 -32.95625 -30.75454 -30.54586 -29.44768 -27.39524 -25.25705 -24.54347 -23.43132 -22.19486 -20.91864 -20.45395 -20.11505 -18.95594 -18.88596 -16.98228 -16.17630 -16.04155 -15.80474 -15.59429 -15.23964 -15.10123 -14.66207 -14.46682 -14.31258 -14.15253 -14.05483 -13.79177 -13.49473 -13.08182 -12.89561 -12.84626 -12.41422 -12.18737 -12.17285 -11.83208 -11.63095 -11.58080 -11.54749 -11.39084 -11.24024 -11.16645 -10.80262 -10.74990 -10.14571 -9.55161 -9.10995 -8.27923 -6.29770 1.12688 1.31284 1.33174 1.45464 1.91310 2.15881 2.35041 2.92729 3.06634 3.68343 3.94688 4.04470 4.11250 4.15100 4.25176 4.30876 4.41824 4.46017 4.49400 4.59906 4.69607 4.80777 4.87741 4.92392 4.93442 4.99785 5.01973 5.09027 5.09937 5.15278 5.16030 5.28804 5.32847 5.38155 5.44550 5.52100 5.56779 5.69837 5.72462 5.76466 6.19229 6.30903 6.35392 6.59607 6.76768 6.92310 7.33380 8.88965 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.016881 B = 0.005384 C = 0.004447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.293247 B = 5199.391857 C = 6294.499786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.063 4.063 3 H 0.051 0.949 4 C -0.002 4.002 5 C -0.516 4.516 6 H 0.035 0.965 7 C 0.004 3.996 8 N -0.952 5.952 9 Si 0.946 3.054 10 H -0.266 1.266 11 H -0.282 1.282 12 H -0.255 1.255 13 C 0.074 3.926 14 N -0.526 5.526 15 C 0.049 3.951 16 C -0.112 4.112 17 C -0.113 4.113 18 C -0.095 4.095 19 C 0.163 3.837 20 H 0.059 0.941 21 C 0.065 3.935 22 C -0.290 4.290 23 C 0.068 3.932 24 N -0.484 5.484 25 H 0.447 0.553 26 N -0.302 5.302 27 H 0.058 0.942 28 H 0.035 0.965 29 H 0.024 0.976 30 H 0.009 0.991 31 H 0.010 0.990 32 H 0.265 0.735 33 H 0.017 0.983 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.034 0.966 37 H 0.059 0.941 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.070 0.930 41 H 0.055 0.945 42 H 0.085 0.915 43 H 0.163 0.837 44 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.271 -7.299 -25.290 26.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.082 4.082 3 H 0.069 0.931 4 C -0.040 4.040 5 C -0.554 4.554 6 H 0.054 0.946 7 C -0.192 4.192 8 N -0.593 5.593 9 Si 0.770 3.230 10 H -0.191 1.191 11 H -0.207 1.207 12 H -0.179 1.179 13 C -0.054 4.054 14 N -0.251 5.251 15 C -0.079 4.079 16 C -0.150 4.150 17 C -0.150 4.150 18 C -0.134 4.134 19 C 0.052 3.948 20 H 0.077 0.923 21 C -0.102 4.102 22 C -0.320 4.320 23 C -0.080 4.080 24 N -0.193 5.193 25 H 0.292 0.708 26 N -0.126 5.126 27 H 0.077 0.923 28 H 0.054 0.946 29 H 0.043 0.957 30 H 0.027 0.973 31 H 0.028 0.972 32 H 0.074 0.926 33 H 0.035 0.965 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.052 0.948 37 H 0.078 0.922 38 H 0.099 0.901 39 H 0.101 0.899 40 H 0.088 0.912 41 H 0.074 0.926 42 H 0.103 0.897 43 H 0.181 0.819 44 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -0.070 -6.759 -24.272 25.195 hybrid contribution 1.256 -1.189 0.684 1.860 sum 1.186 -7.948 -23.588 24.919 Atomic orbital electron populations 1.21305 0.95057 0.99982 0.99290 1.20854 0.96382 0.98266 0.92671 0.93086 1.19519 0.95272 0.95575 0.93641 1.21399 1.34322 1.08564 0.91089 0.94639 1.25946 0.97002 1.00760 0.95490 1.70066 1.49091 1.41481 0.98662 0.85721 0.79380 0.80065 0.77844 1.19075 1.20746 1.17883 1.22062 0.96123 0.97712 0.89493 1.61788 1.58705 1.03649 1.00952 1.22209 0.95594 0.90192 0.99885 1.21574 1.01489 0.98269 0.93647 1.21566 1.00975 0.95056 0.97441 1.21514 1.00169 0.96112 0.95587 1.20111 0.96350 0.86976 0.91319 0.92298 1.22389 0.94920 0.96673 0.96231 1.21676 1.07249 0.91959 1.11083 1.23202 0.90654 1.01196 0.92901 1.46637 1.27354 1.08364 1.36908 0.70824 1.77548 1.18057 0.93560 1.23414 0.92342 0.94623 0.95727 0.97284 0.97185 0.92611 0.96487 0.91043 0.91832 0.94774 0.92178 0.90120 0.89946 0.91164 0.92639 0.89663 0.81916 0.76724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.29 8.89 71.98 0.64 -3.65 16 2 C -0.06 -2.73 2.26 -10.79 -0.02 -2.75 16 3 H 0.05 2.28 6.23 -2.39 -0.01 2.27 16 4 C 0.00 -0.11 3.52 29.85 0.10 -0.01 16 5 C -0.52 -31.13 8.96 25.60 0.23 -30.91 16 6 H 0.04 2.35 7.30 -2.91 -0.02 2.33 16 7 C 0.00 0.26 5.47 84.65 0.46 0.72 16 8 N -0.95 -61.63 13.96 21.44 0.30 -61.33 16 9 Si 0.95 46.48 27.47 68.60 1.88 48.36 16 10 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 11 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 12 H -0.25 -11.92 6.54 99.48 0.65 -11.27 16 13 C 0.07 2.71 4.01 86.30 0.35 3.05 16 14 N -0.53 -16.07 3.83 -875.49 -3.35 -19.42 16 15 C 0.05 1.34 5.30 86.33 0.46 1.80 16 16 C -0.11 -2.38 6.09 30.65 0.19 -2.20 16 17 C -0.11 -1.93 6.00 30.67 0.18 -1.74 16 18 C -0.10 -1.92 5.36 30.64 0.16 -1.76 16 19 C 0.16 4.10 2.32 44.19 0.10 4.20 16 20 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 21 C 0.06 1.72 5.02 43.10 0.22 1.94 16 22 C -0.29 -5.85 10.74 21.99 0.24 -5.62 16 23 C 0.07 1.11 11.99 83.54 1.00 2.11 16 24 N -0.48 -10.35 7.36 -57.59 -0.42 -10.78 16 25 H 0.45 7.13 8.96 -213.33 -1.91 5.21 16 26 N -0.30 -9.03 10.91 -47.38 -0.52 -9.55 16 27 H 0.06 2.34 7.75 -2.39 -0.02 2.32 16 28 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.02 1.16 6.95 -2.39 -0.02 1.14 16 30 H 0.01 0.46 7.20 -2.39 -0.02 0.44 16 31 H 0.01 0.49 7.57 -2.39 -0.02 0.47 16 32 H 0.27 15.99 8.31 -92.71 -0.77 15.22 16 33 H 0.02 0.62 8.12 -2.39 -0.02 0.60 16 34 H 0.07 2.75 5.55 -2.39 -0.01 2.74 16 35 H 0.06 2.02 6.13 -2.39 -0.01 2.00 16 36 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 40 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.16 2.47 8.06 -2.91 -0.02 2.44 16 44 H 0.22 1.39 8.06 -2.91 -0.02 1.37 16 Total: -1.00 -74.49 339.67 1.21 -73.28 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -0.99 Total: 14.24 kcal Atomic # 6 Polarization: -39.11 SS G_CDS: 4.31 Total: -34.80 kcal Atomic # 7 Polarization: -97.09 SS G_CDS: -3.99 Total: -101.08 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 1.88 Total: 48.36 kcal Total: -74.49 1.21 -73.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602661154.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.774 kcal (2) G-P(sol) polarization free energy of solvation -74.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds