Wall clock time and date at job start Mon Mar 30 2020 02:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.46926 * 2 1 4 4 C 1.52999 * 109.47404 * 239.99842 * 2 1 3 5 5 C 1.50697 * 109.46594 * 64.99835 * 4 2 1 6 6 H 1.08004 * 120.00510 * 0.02562 * 5 4 2 7 7 C 1.37882 * 119.99785 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00013 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00137 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47168 * 89.99743 * 9 7 5 11 11 H 1.48503 * 109.47273 * 209.99687 * 9 7 5 12 12 H 1.48497 * 109.47306 * 330.00053 * 9 7 5 13 13 C 1.52999 * 109.47047 * 119.99465 * 2 1 3 14 14 N 1.46896 * 109.47913 * 295.00091 * 13 2 1 15 15 C 1.46851 * 111.00103 * 294.21426 * 14 13 2 16 16 C 1.53029 * 109.52346 * 174.15669 * 15 14 13 17 17 C 1.53123 * 109.28155 * 59.17848 * 16 15 14 18 18 C 1.53119 * 109.15746 * 302.34491 * 17 16 15 19 19 C 1.46841 * 111.00349 * 169.99729 * 14 13 2 20 20 H 1.09003 * 109.45094 * 65.83179 * 19 14 13 21 21 C 1.50698 * 109.46415 * 305.85815 * 19 14 13 22 22 C 1.39870 * 125.89873 * 154.94575 * 21 19 14 23 23 C 1.35318 * 107.92236 * 179.76106 * 22 21 19 24 24 N 1.34948 * 107.74290 * 0.42279 * 23 22 21 25 25 H 0.97001 * 126.03958 * 179.84649 * 24 23 22 26 26 N 1.30835 * 125.89830 * 334.97372 * 21 19 14 27 27 H 1.08992 * 109.47048 * 60.00151 * 1 2 3 28 28 H 1.08997 * 109.46988 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46885 * 300.00038 * 1 2 3 30 30 H 1.08997 * 109.47436 * 184.99709 * 4 2 1 31 31 H 1.08999 * 109.46958 * 305.00136 * 4 2 1 32 32 H 0.96997 * 120.00172 * 179.97438 * 8 7 5 33 33 H 1.09005 * 109.46915 * 175.00195 * 13 2 1 34 34 H 1.09003 * 109.46748 * 55.00646 * 13 2 1 35 35 H 1.08997 * 109.45908 * 54.13814 * 15 14 13 36 36 H 1.08998 * 109.45822 * 294.17279 * 15 14 13 37 37 H 1.08999 * 109.50648 * 299.23427 * 16 15 14 38 38 H 1.08998 * 109.53306 * 179.13716 * 16 15 14 39 39 H 1.09001 * 109.52105 * 182.44094 * 17 16 15 40 40 H 1.08992 * 109.51888 * 62.24639 * 17 16 15 41 41 H 1.08998 * 109.50551 * 297.71266 * 18 17 16 42 42 H 1.09001 * 109.53531 * 177.61293 * 18 17 16 43 43 H 1.08008 * 126.03860 * 0.02562 * 22 21 19 44 44 H 1.07999 * 126.12849 * 180.26834 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4765 6 1 1.0806 0.9746 -2.3756 7 6 1.9924 -0.4022 -3.7283 8 7 2.6756 -1.5192 -3.8511 9 14 1.4976 0.5621 -5.2496 10 1 2.5628 1.5417 -5.5829 11 1 1.3103 -0.3722 -6.3887 12 1 0.2264 1.2834 -4.9868 13 6 2.0400 -0.7211 1.2493 14 7 1.6515 0.0375 2.4457 15 6 2.3292 1.3396 2.4864 16 6 1.7932 2.1587 3.6626 17 6 2.0395 1.3932 4.9657 18 6 1.3639 0.0218 4.8783 19 6 1.9124 -0.7354 3.6667 20 1 2.9867 -0.8779 3.7834 21 6 1.2358 -2.0781 3.5653 22 6 1.6189 -3.2425 4.2389 23 6 0.7609 -4.2281 3.8878 24 7 -0.1279 -3.7083 3.0154 25 1 -0.8594 -4.1855 2.5935 26 7 0.1888 -2.3561 2.8316 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 3.1264 -0.7994 -1.2056 31 1 1.6055 -1.7198 -1.2951 32 1 2.9223 -1.8425 -4.7318 33 1 3.1264 -0.7993 1.2057 34 1 1.6054 -1.7197 1.2952 35 1 2.1425 1.8753 1.5557 36 1 3.4015 1.1871 2.6087 37 1 0.7234 2.3233 3.5340 38 1 2.3070 3.1191 3.7021 39 1 1.6205 1.9531 5.8018 40 1 3.1113 1.2624 5.1142 41 1 0.2874 0.1528 4.7687 42 1 1.5711 -0.5450 5.7860 43 1 2.4500 -3.3370 4.9223 44 1 0.7847 -5.2487 4.2404 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602661156.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:18 Heat of formation + Delta-G solvation = 60.737642 kcal Electronic energy + Delta-G solvation = -22408.771190 eV Core-core repulsion = 19361.912476 eV Total energy + Delta-G solvation = -3046.858714 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.16580 -38.83704 -35.42669 -33.04113 -32.52878 -31.24251 -29.82289 -29.55673 -26.83765 -25.86319 -23.81733 -23.44406 -22.02823 -21.28606 -19.94014 -19.04998 -18.63331 -18.02104 -16.33725 -15.54423 -14.80924 -14.61934 -14.43199 -14.28457 -14.20196 -13.51717 -13.45245 -13.34403 -13.04068 -12.93637 -12.33523 -12.05107 -12.00660 -11.31683 -11.22666 -11.15657 -10.81455 -10.73575 -10.61979 -10.58917 -10.41039 -10.34715 -10.16751 -10.00772 -9.44742 -9.09897 -8.97113 -8.83690 -8.62937 -8.25192 -7.81996 -5.90418 -3.90759 2.03145 2.86698 3.01129 3.37204 3.43132 3.47239 4.15151 4.54055 4.63783 4.92093 4.94729 5.03979 5.13757 5.35507 5.43082 5.45282 5.54653 5.71763 5.77140 5.77747 5.84652 5.95573 5.98364 6.00174 6.02758 6.20278 6.22911 6.30022 6.39504 6.47678 6.64807 6.70099 6.76028 6.91935 7.20875 7.34468 7.36542 7.39553 7.53200 7.63300 7.80013 7.90468 7.98295 8.11390 8.56229 9.15915 9.71948 11.21280 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.018149 B = 0.004890 C = 0.004114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.386845 B = 5724.278211 C = 6804.818403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.077 4.077 3 H 0.052 0.948 4 C 0.029 3.971 5 C -0.508 4.508 6 H 0.056 0.944 7 C 0.054 3.946 8 N -0.899 5.899 9 Si 0.889 3.111 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.060 3.940 14 N -0.520 5.520 15 C 0.052 3.948 16 C -0.117 4.117 17 C -0.119 4.119 18 C -0.103 4.103 19 C 0.165 3.835 20 H 0.053 0.947 21 C 0.080 3.920 22 C -0.272 4.272 23 C 0.051 3.949 24 N -0.483 5.483 25 H 0.437 0.563 26 N -0.247 5.247 27 H 0.047 0.953 28 H 0.039 0.961 29 H 0.042 0.958 30 H 0.010 0.990 31 H 0.013 0.987 32 H 0.258 0.742 33 H 0.020 0.980 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.028 0.972 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.058 0.942 41 H 0.072 0.928 42 H 0.064 0.936 43 H 0.143 0.857 44 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.254 -1.321 20.279 20.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.096 4.096 3 H 0.071 0.929 4 C -0.009 4.009 5 C -0.546 4.546 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.539 5.539 9 Si 0.717 3.283 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.199 1.199 13 C -0.067 4.067 14 N -0.245 5.245 15 C -0.076 4.076 16 C -0.155 4.155 17 C -0.156 4.156 18 C -0.141 4.141 19 C 0.055 3.945 20 H 0.070 0.930 21 C -0.088 4.088 22 C -0.302 4.302 23 C -0.097 4.097 24 N -0.190 5.190 25 H 0.281 0.719 26 N -0.070 5.070 27 H 0.066 0.934 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.028 0.972 31 H 0.032 0.968 32 H 0.068 0.932 33 H 0.038 0.962 34 H 0.097 0.903 35 H 0.103 0.897 36 H 0.046 0.954 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.091 0.909 42 H 0.083 0.917 43 H 0.161 0.839 44 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -3.531 -0.910 19.305 19.647 hybrid contribution 0.989 -0.558 -0.565 1.268 sum -2.542 -1.468 18.741 18.969 Atomic orbital electron populations 1.21488 0.95576 1.00511 0.99618 1.21174 0.96115 0.98637 0.93631 0.92924 1.19103 0.95674 0.95505 0.90617 1.21256 1.34226 1.08134 0.90989 0.92600 1.25020 0.95458 0.95095 0.99028 1.69974 1.39398 1.21300 1.23201 0.86648 0.78928 0.79814 0.82938 1.20797 1.21383 1.19891 1.22387 0.96794 0.98221 0.89281 1.61884 1.58376 1.03135 1.01072 1.22146 0.95227 0.90731 0.99451 1.21599 1.02126 0.97716 0.94010 1.21574 1.00263 0.95929 0.97863 1.21554 1.01308 0.95338 0.95946 1.19955 0.95849 0.86858 0.91885 0.92955 1.22141 0.94825 0.95818 0.95974 1.21337 1.05860 0.92589 1.10405 1.22492 0.92568 0.99756 0.94848 1.46577 1.26831 1.09113 1.36499 0.71922 1.77647 1.16683 0.91114 1.21559 0.93424 0.94217 0.93927 0.97205 0.96843 0.93229 0.96197 0.90324 0.89655 0.95384 0.91088 0.91879 0.91943 0.92335 0.90929 0.91720 0.83940 0.81116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.44 8.89 37.16 0.33 -2.11 16 2 C -0.08 -1.69 2.26 -90.62 -0.20 -1.89 16 3 H 0.05 1.16 6.22 -51.93 -0.32 0.84 16 4 C 0.03 0.77 4.45 -27.88 -0.12 0.65 16 5 C -0.51 -14.73 8.41 -34.44 -0.29 -15.02 16 6 H 0.06 1.58 7.06 -52.48 -0.37 1.21 16 7 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -27.78 13.29 55.43 0.74 -27.05 16 9 Si 0.89 22.26 29.54 -169.99 -5.02 17.24 16 10 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 12 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 13 C 0.06 1.17 4.01 -3.83 -0.02 1.15 16 14 N -0.52 -8.40 3.83 -228.09 -0.87 -9.27 16 15 C 0.05 0.76 5.30 -3.84 -0.02 0.74 16 16 C -0.12 -1.36 6.09 -26.65 -0.16 -1.53 16 17 C -0.12 -1.22 6.00 -26.61 -0.16 -1.38 16 18 C -0.10 -1.19 5.36 -26.65 -0.14 -1.33 16 19 C 0.17 2.31 2.32 -68.88 -0.16 2.15 16 20 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 21 C 0.08 1.18 5.01 -82.41 -0.41 0.77 16 22 C -0.27 -3.28 10.74 -40.01 -0.43 -3.71 16 23 C 0.05 0.53 11.99 -17.22 -0.21 0.32 16 24 N -0.48 -5.88 7.36 30.45 0.22 -5.66 16 25 H 0.44 4.06 8.96 -182.60 -1.64 2.42 16 26 N -0.25 -3.95 10.93 33.67 0.37 -3.58 16 27 H 0.05 1.06 6.95 -51.93 -0.36 0.70 16 28 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.04 0.84 7.75 -51.93 -0.40 0.44 16 30 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 33 H 0.02 0.40 8.12 -51.93 -0.42 -0.02 16 34 H 0.08 1.62 5.56 -51.93 -0.29 1.33 16 35 H 0.09 1.36 6.12 -51.93 -0.32 1.04 16 36 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.14 1.41 8.06 -52.48 -0.42 0.98 16 44 H 0.17 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 343.28 15.07 5.17 5.17 Total: -1.00 -33.21 343.28 -10.24 -43.45 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -8.75 Total: -0.61 kcal Atomic # 6 Polarization: -17.61 SS G_CDS: -2.09 Total: -19.70 kcal Atomic # 7 Polarization: -46.01 SS G_CDS: 0.46 Total: -45.56 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.21 -10.24 -43.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602661156.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.191 kcal (2) G-P(sol) polarization free energy of solvation -33.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds