Wall clock time and date at job start Mon Mar 30 2020 02:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.46926 * 2 1 4 4 C 1.52999 * 109.47404 * 239.99842 * 2 1 3 5 5 C 1.50697 * 109.46594 * 64.99835 * 4 2 1 6 6 H 1.08004 * 120.00510 * 0.02562 * 5 4 2 7 7 C 1.37882 * 119.99785 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00013 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00137 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47168 * 89.99743 * 9 7 5 11 11 H 1.48503 * 109.47273 * 209.99687 * 9 7 5 12 12 H 1.48497 * 109.47306 * 330.00053 * 9 7 5 13 13 C 1.52999 * 109.47047 * 119.99465 * 2 1 3 14 14 N 1.46896 * 109.47913 * 295.00091 * 13 2 1 15 15 C 1.46851 * 111.00103 * 294.21426 * 14 13 2 16 16 C 1.53029 * 109.52346 * 174.15669 * 15 14 13 17 17 C 1.53123 * 109.28155 * 59.17848 * 16 15 14 18 18 C 1.53119 * 109.15746 * 302.34491 * 17 16 15 19 19 C 1.46841 * 111.00349 * 169.99729 * 14 13 2 20 20 H 1.09003 * 109.45094 * 65.83179 * 19 14 13 21 21 C 1.50698 * 109.46415 * 305.85815 * 19 14 13 22 22 C 1.39870 * 125.89873 * 154.94575 * 21 19 14 23 23 C 1.35318 * 107.92236 * 179.76106 * 22 21 19 24 24 N 1.34948 * 107.74290 * 0.42279 * 23 22 21 25 25 H 0.97001 * 126.03958 * 179.84649 * 24 23 22 26 26 N 1.30835 * 125.89830 * 334.97372 * 21 19 14 27 27 H 1.08992 * 109.47048 * 60.00151 * 1 2 3 28 28 H 1.08997 * 109.46988 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46885 * 300.00038 * 1 2 3 30 30 H 1.08997 * 109.47436 * 184.99709 * 4 2 1 31 31 H 1.08999 * 109.46958 * 305.00136 * 4 2 1 32 32 H 0.96997 * 120.00172 * 179.97438 * 8 7 5 33 33 H 1.09005 * 109.46915 * 175.00195 * 13 2 1 34 34 H 1.09003 * 109.46748 * 55.00646 * 13 2 1 35 35 H 1.08997 * 109.45908 * 54.13814 * 15 14 13 36 36 H 1.08998 * 109.45822 * 294.17279 * 15 14 13 37 37 H 1.08999 * 109.50648 * 299.23427 * 16 15 14 38 38 H 1.08998 * 109.53306 * 179.13716 * 16 15 14 39 39 H 1.09001 * 109.52105 * 182.44094 * 17 16 15 40 40 H 1.08992 * 109.51888 * 62.24639 * 17 16 15 41 41 H 1.08998 * 109.50551 * 297.71266 * 18 17 16 42 42 H 1.09001 * 109.53531 * 177.61293 * 18 17 16 43 43 H 1.08008 * 126.03860 * 0.02562 * 22 21 19 44 44 H 1.07999 * 126.12849 * 180.26834 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4765 6 1 1.0806 0.9746 -2.3756 7 6 1.9924 -0.4022 -3.7283 8 7 2.6756 -1.5192 -3.8511 9 14 1.4976 0.5621 -5.2496 10 1 2.5628 1.5417 -5.5829 11 1 1.3103 -0.3722 -6.3887 12 1 0.2264 1.2834 -4.9868 13 6 2.0400 -0.7211 1.2493 14 7 1.6515 0.0375 2.4457 15 6 2.3292 1.3396 2.4864 16 6 1.7932 2.1587 3.6626 17 6 2.0395 1.3932 4.9657 18 6 1.3639 0.0218 4.8783 19 6 1.9124 -0.7354 3.6667 20 1 2.9867 -0.8779 3.7834 21 6 1.2358 -2.0781 3.5653 22 6 1.6189 -3.2425 4.2389 23 6 0.7609 -4.2281 3.8878 24 7 -0.1279 -3.7083 3.0154 25 1 -0.8594 -4.1855 2.5935 26 7 0.1888 -2.3561 2.8316 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 3.1264 -0.7994 -1.2056 31 1 1.6055 -1.7198 -1.2951 32 1 2.9223 -1.8425 -4.7318 33 1 3.1264 -0.7993 1.2057 34 1 1.6054 -1.7197 1.2952 35 1 2.1425 1.8753 1.5557 36 1 3.4015 1.1871 2.6087 37 1 0.7234 2.3233 3.5340 38 1 2.3070 3.1191 3.7021 39 1 1.6205 1.9531 5.8018 40 1 3.1113 1.2624 5.1142 41 1 0.2874 0.1528 4.7687 42 1 1.5711 -0.5450 5.7860 43 1 2.4500 -3.3370 4.9223 44 1 0.7847 -5.2487 4.2404 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602661156.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:17 Heat of formation + Delta-G solvation = 39.713718 kcal Electronic energy + Delta-G solvation = -22409.682856 eV Core-core repulsion = 19361.912476 eV Total energy + Delta-G solvation = -3047.770380 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.13600 -40.01624 -37.12828 -34.74660 -33.78386 -32.82909 -30.75959 -30.55057 -28.91738 -27.39372 -25.46891 -24.55571 -23.66119 -22.20680 -20.91503 -20.43523 -20.12105 -18.92654 -18.51278 -16.92816 -16.40123 -16.03040 -15.77423 -15.59040 -15.23751 -14.89729 -14.48272 -14.43321 -14.32266 -14.26061 -13.93093 -13.68529 -13.28806 -13.06664 -12.87625 -12.77840 -12.53588 -12.23177 -12.18785 -12.02765 -11.63231 -11.57361 -11.53015 -11.38755 -11.20153 -11.03428 -10.76096 -10.54178 -10.14732 -9.55670 -9.12564 -8.18277 -6.27922 1.12326 1.38439 1.40254 1.51502 1.90825 2.15439 2.41122 2.93686 3.14583 3.68394 3.94646 4.05081 4.13270 4.14768 4.25675 4.33017 4.42758 4.47907 4.53870 4.59948 4.70955 4.84250 4.88952 4.93572 4.94597 5.03201 5.06210 5.10026 5.14554 5.15824 5.28831 5.30103 5.33822 5.47295 5.49516 5.54251 5.57953 5.75207 5.80543 5.87598 6.16205 6.31500 6.32277 6.59205 6.87213 6.91676 7.40212 8.94173 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.018149 B = 0.004890 C = 0.004114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.386845 B = 5724.278211 C = 6804.818403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.067 4.067 3 H 0.054 0.946 4 C 0.038 3.962 5 C -0.527 4.527 6 H 0.060 0.940 7 C -0.003 4.003 8 N -0.937 5.937 9 Si 0.963 3.037 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.263 1.263 13 C 0.077 3.923 14 N -0.523 5.523 15 C 0.048 3.952 16 C -0.110 4.110 17 C -0.113 4.113 18 C -0.094 4.094 19 C 0.161 3.839 20 H 0.055 0.945 21 C 0.064 3.936 22 C -0.291 4.291 23 C 0.068 3.932 24 N -0.484 5.484 25 H 0.447 0.553 26 N -0.301 5.301 27 H 0.034 0.966 28 H 0.027 0.973 29 H 0.059 0.941 30 H -0.019 1.019 31 H -0.019 1.019 32 H 0.262 0.738 33 H 0.005 0.995 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.030 0.970 37 H 0.062 0.938 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.068 0.932 41 H 0.057 0.943 42 H 0.084 0.916 43 H 0.163 0.837 44 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.576 -0.674 21.783 21.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.085 4.085 3 H 0.072 0.928 4 C 0.000 4.000 5 C -0.565 4.565 6 H 0.079 0.921 7 C -0.200 4.200 8 N -0.578 5.578 9 Si 0.788 3.212 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.188 1.188 13 C -0.051 4.051 14 N -0.247 5.247 15 C -0.080 4.080 16 C -0.148 4.148 17 C -0.151 4.151 18 C -0.133 4.133 19 C 0.051 3.949 20 H 0.073 0.927 21 C -0.103 4.103 22 C -0.321 4.321 23 C -0.080 4.080 24 N -0.193 5.193 25 H 0.292 0.708 26 N -0.125 5.125 27 H 0.053 0.947 28 H 0.046 0.954 29 H 0.078 0.922 30 H -0.001 1.001 31 H 0.000 1.000 32 H 0.071 0.929 33 H 0.024 0.976 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.048 0.952 37 H 0.081 0.919 38 H 0.101 0.899 39 H 0.103 0.897 40 H 0.087 0.913 41 H 0.076 0.924 42 H 0.103 0.897 43 H 0.181 0.819 44 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -3.863 -0.249 20.829 21.186 hybrid contribution 1.108 -0.852 -0.999 1.718 sum -2.755 -1.101 19.830 20.051 Atomic orbital electron populations 1.21301 0.94727 0.99733 0.99681 1.20978 0.96568 0.98180 0.92805 0.92810 1.18956 0.93635 0.94357 0.93012 1.21605 1.34430 1.08486 0.91979 0.92138 1.25982 0.95189 0.96097 1.02694 1.70117 1.40384 1.23004 1.24270 0.85471 0.79060 0.78371 0.78307 1.19674 1.20791 1.18767 1.22007 0.95460 0.97686 0.89906 1.61828 1.58571 1.03583 1.00763 1.22228 0.95465 0.90143 1.00130 1.21569 1.01623 0.98216 0.93403 1.21572 1.00904 0.95005 0.97614 1.21516 1.00265 0.96126 0.95390 1.20122 0.96171 0.87053 0.91523 0.92722 1.22402 0.94840 0.96761 0.96301 1.21687 1.07151 0.92080 1.11189 1.23207 0.90695 1.01238 0.92811 1.46630 1.27504 1.08291 1.36855 0.70829 1.77531 1.18218 0.93360 1.23402 0.94720 0.95370 0.92195 1.00055 1.00014 0.92938 0.97646 0.91620 0.91536 0.95213 0.91883 0.89935 0.89718 0.91347 0.92439 0.89706 0.81923 0.76641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.24 8.89 71.98 0.64 -3.60 16 2 C -0.07 -3.04 2.26 -10.79 -0.02 -3.06 16 3 H 0.05 2.44 6.22 -2.38 -0.01 2.43 16 4 C 0.04 2.16 4.45 29.85 0.13 2.29 16 5 C -0.53 -31.33 8.41 25.60 0.22 -31.11 16 6 H 0.06 3.47 7.06 -2.91 -0.02 3.45 16 7 C 0.00 -0.16 5.46 84.66 0.46 0.30 16 8 N -0.94 -59.30 13.29 21.45 0.28 -59.01 16 9 Si 0.96 45.93 29.54 68.60 2.03 47.95 16 10 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 11 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 12 H -0.26 -12.03 7.11 99.48 0.71 -11.32 16 13 C 0.08 3.12 4.01 86.30 0.35 3.47 16 14 N -0.52 -17.00 3.83 -875.53 -3.35 -20.35 16 15 C 0.05 1.38 5.30 86.32 0.46 1.83 16 16 C -0.11 -2.38 6.09 30.65 0.19 -2.19 16 17 C -0.11 -2.02 6.00 30.68 0.18 -1.84 16 18 C -0.09 -2.01 5.36 30.65 0.16 -1.85 16 19 C 0.16 4.43 2.32 44.19 0.10 4.53 16 20 H 0.06 1.46 8.14 -2.39 -0.02 1.45 16 21 C 0.06 1.86 5.01 43.10 0.22 2.07 16 22 C -0.29 -6.59 10.74 21.99 0.24 -6.35 16 23 C 0.07 1.27 11.99 83.54 1.00 2.27 16 24 N -0.48 -11.49 7.36 -57.59 -0.42 -11.92 16 25 H 0.45 8.11 8.96 -213.33 -1.91 6.19 16 26 N -0.30 -9.73 10.93 -47.39 -0.52 -10.25 16 27 H 0.03 1.56 6.95 -2.39 -0.02 1.55 16 28 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.06 2.38 7.75 -2.39 -0.02 2.36 16 30 H -0.02 -1.16 8.14 -2.39 -0.02 -1.18 16 31 H -0.02 -1.16 8.14 -2.39 -0.02 -1.17 16 32 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 33 H 0.01 0.23 8.12 -2.38 -0.02 0.21 16 34 H 0.07 2.84 5.56 -2.39 -0.01 2.83 16 35 H 0.07 2.14 6.12 -2.39 -0.01 2.12 16 36 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.16 2.84 8.06 -2.91 -0.02 2.82 16 44 H 0.22 1.84 8.06 -2.91 -0.02 1.82 16 Total: -1.00 -73.99 343.28 1.40 -72.59 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -0.94 Total: 14.23 kcal Atomic # 6 Polarization: -37.57 SS G_CDS: 4.32 Total: -33.25 kcal Atomic # 7 Polarization: -97.51 SS G_CDS: -4.01 Total: -101.52 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.95 kcal Total: -73.99 1.40 -72.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602661156.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.300 kcal (2) G-P(sol) polarization free energy of solvation -73.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds