Wall clock time and date at job start Mon Mar 30 2020 02:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47045 * 2 1 4 4 C 1.53003 * 109.46710 * 240.00289 * 2 1 3 5 5 C 1.50696 * 109.47500 * 65.00013 * 4 2 1 6 6 H 1.08005 * 120.00002 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00250 * 180.27077 * 5 4 2 8 8 N 1.31510 * 119.99844 * 359.73084 * 7 5 4 9 9 Si 1.86800 * 119.99860 * 179.72396 * 7 5 4 10 10 H 1.48497 * 109.47434 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46993 * 120.00647 * 9 7 5 12 12 H 1.48498 * 109.47199 * 240.00270 * 9 7 5 13 13 C 1.53000 * 109.47316 * 120.00580 * 2 1 3 14 14 N 1.46903 * 109.46882 * 294.88699 * 13 2 1 15 15 C 1.46842 * 111.00285 * 149.16909 * 14 13 2 16 16 C 1.53028 * 109.52744 * 185.84180 * 15 14 13 17 17 C 1.53119 * 109.27633 * 300.82086 * 16 15 14 18 18 C 1.53117 * 109.16127 * 57.65621 * 17 16 15 19 19 C 1.46843 * 110.99922 * 273.38324 * 14 13 2 20 20 H 1.08995 * 109.46419 * 294.17074 * 19 14 13 21 21 C 1.50700 * 109.46744 * 54.14568 * 19 14 13 22 22 C 1.39871 * 125.89444 * 244.84814 * 21 19 14 23 23 C 1.35319 * 107.91706 * 179.97438 * 22 21 19 24 24 N 1.34943 * 107.74869 * 359.97438 * 23 22 21 25 25 H 0.97003 * 126.04307 * 180.02562 * 24 23 22 26 26 N 1.30835 * 125.90182 * 64.53152 * 21 19 14 27 27 H 1.08999 * 109.47187 * 180.75765 * 1 2 3 28 28 H 1.09000 * 109.46887 * 300.75997 * 1 2 3 29 29 H 1.09000 * 109.47013 * 60.75242 * 1 2 3 30 30 H 1.08994 * 109.47444 * 304.99634 * 4 2 1 31 31 H 1.09003 * 109.47054 * 184.99886 * 4 2 1 32 32 H 0.97001 * 119.99799 * 179.97438 * 8 7 5 33 33 H 1.08995 * 109.47460 * 54.88647 * 13 2 1 34 34 H 1.09002 * 109.47234 * 174.89205 * 13 2 1 35 35 H 1.09008 * 109.46028 * 305.86061 * 15 14 13 36 36 H 1.09003 * 109.46061 * 65.81935 * 15 14 13 37 37 H 1.08999 * 109.50500 * 60.76165 * 16 15 14 38 38 H 1.08996 * 109.50904 * 180.87976 * 16 15 14 39 39 H 1.09006 * 109.52257 * 177.55744 * 17 16 15 40 40 H 1.08999 * 109.52416 * 297.74858 * 17 16 15 41 41 H 1.08995 * 109.50823 * 62.28692 * 18 17 16 42 42 H 1.09002 * 109.50439 * 182.36808 * 18 17 16 43 43 H 1.07998 * 126.04234 * 359.96788 * 22 21 19 44 44 H 1.07996 * 126.12641 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6412 0.0571 -2.4766 6 1 1.0806 0.9747 -2.3757 7 6 1.9878 -0.4048 -3.7287 8 7 2.6709 -1.5219 -3.8516 9 14 1.4869 0.5560 -5.2503 10 1 0.7316 1.7682 -4.8439 11 1 2.7017 0.9594 -6.0031 12 1 0.6297 -0.2956 -6.1135 13 6 2.0400 -0.7214 1.2491 14 7 1.6537 0.0386 2.4455 15 6 1.4401 -0.8553 3.5907 16 6 0.9003 -0.0499 4.7746 17 6 1.9045 1.0468 5.1397 18 6 2.1459 1.9349 3.9160 19 6 2.6497 1.0718 2.7569 20 1 3.5893 0.5972 3.0393 21 6 2.8699 1.9389 1.5441 22 6 4.0600 2.0447 0.8168 23 6 3.8534 2.9197 -0.1945 24 7 2.5778 3.3518 -0.1105 25 1 2.1498 3.9864 -0.7063 26 7 1.9793 2.7182 0.9862 27 1 -0.3633 -1.0276 0.0136 28 1 -0.3633 0.5256 0.8831 29 1 -0.3633 0.5021 -0.8967 30 1 1.6054 -1.7197 -1.2953 31 1 3.1263 -0.7995 -1.2057 32 1 2.9144 -1.8470 -4.7324 33 1 1.6039 -1.7192 1.2961 34 1 3.1262 -0.8013 1.2046 35 1 0.7209 -1.6281 3.3190 36 1 2.3855 -1.3211 3.8691 37 1 -0.0519 0.4049 4.5014 38 1 0.7566 -0.7109 5.6292 39 1 1.5045 1.6504 5.9545 40 1 2.8447 0.5911 5.4503 41 1 1.2134 2.4209 3.6293 42 1 2.8918 2.6923 4.1574 43 1 4.9810 1.5207 1.0256 44 1 4.5792 3.2181 -0.9365 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602661157.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:21 Heat of formation + Delta-G solvation = 69.225853 kcal Electronic energy + Delta-G solvation = -23086.371063 eV Core-core repulsion = 20039.880426 eV Total energy + Delta-G solvation = -3046.490638 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.06223 -38.69536 -35.34898 -32.94421 -32.35060 -31.39215 -29.50121 -29.39030 -26.83851 -25.80331 -23.87641 -23.19730 -22.01316 -21.13444 -19.75844 -18.91115 -18.73297 -17.69652 -16.30454 -15.39224 -15.18468 -14.48982 -14.40266 -14.21333 -13.80634 -13.32054 -13.22692 -13.11687 -12.96852 -12.90991 -12.40148 -12.05632 -11.94628 -11.28944 -11.14322 -11.10898 -10.82081 -10.74649 -10.67874 -10.45648 -10.33272 -10.22409 -10.17200 -10.00284 -9.62741 -9.03876 -8.84687 -8.47204 -8.27745 -8.19175 -7.82808 -5.91437 -3.90707 2.37781 3.15978 3.31311 3.32899 3.39473 3.42391 4.26788 4.51496 4.82200 4.93912 5.04877 5.16031 5.22594 5.43369 5.44301 5.49144 5.63857 5.74109 5.78382 5.83706 5.96606 6.01607 6.05654 6.10409 6.16537 6.25995 6.27796 6.38251 6.41717 6.52920 6.59451 6.78760 6.97233 7.01280 7.27721 7.35818 7.43774 7.56868 7.63066 7.72215 7.83276 8.03843 8.13446 8.15483 8.58629 9.16071 9.71179 11.20400 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.022151 B = 0.005778 C = 0.005058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.757784 B = 4844.698655 C = 5534.915177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.095 4.095 3 H 0.087 0.913 4 C 0.029 3.971 5 C -0.498 4.498 6 H 0.052 0.948 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.884 3.116 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.285 1.285 13 C 0.062 3.938 14 N -0.523 5.523 15 C 0.056 3.944 16 C -0.116 4.116 17 C -0.119 4.119 18 C -0.106 4.106 19 C 0.171 3.829 20 H 0.051 0.949 21 C 0.089 3.911 22 C -0.269 4.269 23 C 0.069 3.931 24 N -0.473 5.473 25 H 0.436 0.564 26 N -0.261 5.261 27 H 0.028 0.972 28 H 0.042 0.958 29 H 0.046 0.954 30 H 0.008 0.992 31 H 0.009 0.991 32 H 0.257 0.743 33 H 0.059 0.941 34 H 0.032 0.968 35 H 0.074 0.926 36 H 0.028 0.972 37 H 0.071 0.929 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.057 0.943 41 H 0.077 0.923 42 H 0.062 0.938 43 H 0.139 0.861 44 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.722 6.936 15.367 16.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.114 4.114 3 H 0.105 0.895 4 C -0.008 4.008 5 C -0.536 4.536 6 H 0.070 0.930 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.713 3.287 10 H -0.200 1.200 11 H -0.213 1.213 12 H -0.211 1.211 13 C -0.065 4.065 14 N -0.249 5.249 15 C -0.072 4.072 16 C -0.154 4.154 17 C -0.157 4.157 18 C -0.145 4.145 19 C 0.061 3.939 20 H 0.069 0.931 21 C -0.078 4.078 22 C -0.299 4.299 23 C -0.079 4.079 24 N -0.181 5.181 25 H 0.279 0.721 26 N -0.085 5.085 27 H 0.048 0.952 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.026 0.974 31 H 0.027 0.973 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.051 0.949 35 H 0.093 0.907 36 H 0.046 0.954 37 H 0.090 0.910 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.076 0.924 41 H 0.096 0.904 42 H 0.081 0.919 43 H 0.157 0.843 44 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 0.179 7.471 15.193 16.931 hybrid contribution 1.277 -0.165 -1.475 1.958 sum 1.456 7.307 13.718 15.610 Atomic orbital electron populations 1.21489 0.96528 0.99335 0.99913 1.21593 0.95495 1.01545 0.92743 0.89533 1.19096 0.95571 0.95218 0.90955 1.21217 1.33704 1.07806 0.90904 0.93014 1.25001 0.95637 0.95115 0.98841 1.69979 1.39636 1.21269 1.22935 0.86664 0.78160 0.80174 0.83734 1.19981 1.21254 1.21147 1.22313 0.97803 0.96251 0.90089 1.61966 1.45096 1.13897 1.03904 1.22111 0.99347 0.94782 0.90934 1.21592 0.99556 0.97376 0.96906 1.21579 0.99201 0.97396 0.97517 1.21589 1.02190 0.97272 0.93414 1.19900 0.93527 0.90804 0.89706 0.93119 1.21750 0.91553 0.97348 0.97109 1.21273 1.00403 1.07609 1.00637 1.22406 0.88006 0.97969 0.99531 1.46322 1.09224 1.37175 1.25339 0.72063 1.77278 1.19793 1.12255 0.99220 0.95245 0.93885 0.93541 0.97357 0.97315 0.93345 0.92246 0.94947 0.90732 0.95421 0.91032 0.92009 0.91988 0.92446 0.90393 0.91930 0.84340 0.81243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.50 8.89 37.16 0.33 -2.17 16 2 C -0.09 -2.08 2.22 -90.62 -0.20 -2.28 16 3 H 0.09 1.88 3.02 -51.93 -0.16 1.72 16 4 C 0.03 0.78 4.45 -27.88 -0.12 0.65 16 5 C -0.50 -14.19 8.40 -34.44 -0.29 -14.48 16 6 H 0.05 1.47 7.06 -52.48 -0.37 1.10 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -27.37 13.29 55.43 0.74 -26.63 16 9 Si 0.88 21.89 29.54 -169.99 -5.02 16.87 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 13 C 0.06 1.18 4.18 -3.82 -0.02 1.16 16 14 N -0.52 -8.36 3.89 -228.08 -0.89 -9.24 16 15 C 0.06 0.74 5.36 -3.84 -0.02 0.72 16 16 C -0.12 -1.28 6.09 -26.66 -0.16 -1.44 16 17 C -0.12 -1.24 6.00 -26.61 -0.16 -1.40 16 18 C -0.11 -1.34 5.34 -26.65 -0.14 -1.48 16 19 C 0.17 2.54 2.16 -68.87 -0.15 2.39 16 20 H 0.05 0.73 8.12 -51.93 -0.42 0.30 16 21 C 0.09 1.48 3.40 -82.41 -0.28 1.20 16 22 C -0.27 -4.28 10.44 -40.01 -0.42 -4.70 16 23 C 0.07 1.02 11.83 -17.22 -0.20 0.81 16 24 N -0.47 -7.27 7.04 30.44 0.21 -7.06 16 25 H 0.44 5.53 8.96 -182.61 -1.64 3.89 16 26 N -0.26 -4.56 11.13 33.67 0.37 -4.19 16 27 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.04 0.87 7.78 -51.93 -0.40 0.47 16 29 H 0.05 1.08 6.93 -51.93 -0.36 0.72 16 30 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 33 H 0.06 1.11 7.62 -51.93 -0.40 0.72 16 34 H 0.03 0.63 7.81 -51.93 -0.41 0.22 16 35 H 0.07 0.98 7.90 -51.92 -0.41 0.57 16 36 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.14 1.99 8.06 -52.49 -0.42 1.57 16 44 H 0.17 1.97 8.06 -52.49 -0.42 1.54 16 LS Contribution 341.47 15.07 5.15 5.15 Total: -1.00 -32.52 341.47 -10.14 -42.66 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -8.77 Total: 2.00 kcal Atomic # 6 Polarization: -17.62 SS G_CDS: -1.93 Total: -19.55 kcal Atomic # 7 Polarization: -47.56 SS G_CDS: 0.44 Total: -47.12 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.52 -10.14 -42.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602661157.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.890 kcal (2) G-P(sol) polarization free energy of solvation -32.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds