Wall clock time and date at job start Mon Mar 30 2020 02:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47045 * 2 1 4 4 C 1.53003 * 109.46710 * 240.00289 * 2 1 3 5 5 C 1.50696 * 109.47500 * 65.00013 * 4 2 1 6 6 H 1.08005 * 120.00002 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00250 * 180.27077 * 5 4 2 8 8 N 1.31510 * 119.99844 * 359.73084 * 7 5 4 9 9 Si 1.86800 * 119.99860 * 179.72396 * 7 5 4 10 10 H 1.48497 * 109.47434 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46993 * 120.00647 * 9 7 5 12 12 H 1.48498 * 109.47199 * 240.00270 * 9 7 5 13 13 C 1.53000 * 109.47316 * 120.00580 * 2 1 3 14 14 N 1.46903 * 109.46882 * 294.88699 * 13 2 1 15 15 C 1.46842 * 111.00285 * 149.16909 * 14 13 2 16 16 C 1.53028 * 109.52744 * 185.84180 * 15 14 13 17 17 C 1.53119 * 109.27633 * 300.82086 * 16 15 14 18 18 C 1.53117 * 109.16127 * 57.65621 * 17 16 15 19 19 C 1.46843 * 110.99922 * 273.38324 * 14 13 2 20 20 H 1.08995 * 109.46419 * 294.17074 * 19 14 13 21 21 C 1.50700 * 109.46744 * 54.14568 * 19 14 13 22 22 C 1.39871 * 125.89444 * 244.84814 * 21 19 14 23 23 C 1.35319 * 107.91706 * 179.97438 * 22 21 19 24 24 N 1.34943 * 107.74869 * 359.97438 * 23 22 21 25 25 H 0.97003 * 126.04307 * 180.02562 * 24 23 22 26 26 N 1.30835 * 125.90182 * 64.53152 * 21 19 14 27 27 H 1.08999 * 109.47187 * 180.75765 * 1 2 3 28 28 H 1.09000 * 109.46887 * 300.75997 * 1 2 3 29 29 H 1.09000 * 109.47013 * 60.75242 * 1 2 3 30 30 H 1.08994 * 109.47444 * 304.99634 * 4 2 1 31 31 H 1.09003 * 109.47054 * 184.99886 * 4 2 1 32 32 H 0.97001 * 119.99799 * 179.97438 * 8 7 5 33 33 H 1.08995 * 109.47460 * 54.88647 * 13 2 1 34 34 H 1.09002 * 109.47234 * 174.89205 * 13 2 1 35 35 H 1.09008 * 109.46028 * 305.86061 * 15 14 13 36 36 H 1.09003 * 109.46061 * 65.81935 * 15 14 13 37 37 H 1.08999 * 109.50500 * 60.76165 * 16 15 14 38 38 H 1.08996 * 109.50904 * 180.87976 * 16 15 14 39 39 H 1.09006 * 109.52257 * 177.55744 * 17 16 15 40 40 H 1.08999 * 109.52416 * 297.74858 * 17 16 15 41 41 H 1.08995 * 109.50823 * 62.28692 * 18 17 16 42 42 H 1.09002 * 109.50439 * 182.36808 * 18 17 16 43 43 H 1.07998 * 126.04234 * 359.96788 * 22 21 19 44 44 H 1.07996 * 126.12641 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6412 0.0571 -2.4766 6 1 1.0806 0.9747 -2.3757 7 6 1.9878 -0.4048 -3.7287 8 7 2.6709 -1.5219 -3.8516 9 14 1.4869 0.5560 -5.2503 10 1 0.7316 1.7682 -4.8439 11 1 2.7017 0.9594 -6.0031 12 1 0.6297 -0.2956 -6.1135 13 6 2.0400 -0.7214 1.2491 14 7 1.6537 0.0386 2.4455 15 6 1.4401 -0.8553 3.5907 16 6 0.9003 -0.0499 4.7746 17 6 1.9045 1.0468 5.1397 18 6 2.1459 1.9349 3.9160 19 6 2.6497 1.0718 2.7569 20 1 3.5893 0.5972 3.0393 21 6 2.8699 1.9389 1.5441 22 6 4.0600 2.0447 0.8168 23 6 3.8534 2.9197 -0.1945 24 7 2.5778 3.3518 -0.1105 25 1 2.1498 3.9864 -0.7063 26 7 1.9793 2.7182 0.9862 27 1 -0.3633 -1.0276 0.0136 28 1 -0.3633 0.5256 0.8831 29 1 -0.3633 0.5021 -0.8967 30 1 1.6054 -1.7197 -1.2953 31 1 3.1263 -0.7995 -1.2057 32 1 2.9144 -1.8470 -4.7324 33 1 1.6039 -1.7192 1.2961 34 1 3.1262 -0.8013 1.2046 35 1 0.7209 -1.6281 3.3190 36 1 2.3855 -1.3211 3.8691 37 1 -0.0519 0.4049 4.5014 38 1 0.7566 -0.7109 5.6292 39 1 1.5045 1.6504 5.9545 40 1 2.8447 0.5911 5.4503 41 1 1.2134 2.4209 3.6293 42 1 2.8918 2.6923 4.1574 43 1 4.9810 1.5207 1.0256 44 1 4.5792 3.2181 -0.9365 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602661157.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:20 Heat of formation + Delta-G solvation = 49.084616 kcal Electronic energy + Delta-G solvation = -23087.244453 eV Core-core repulsion = 20039.880426 eV Total energy + Delta-G solvation = -3047.364027 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.28495 -39.86153 -37.03050 -34.71593 -33.54905 -33.02295 -30.71306 -30.50613 -28.88861 -27.33667 -25.40440 -24.52157 -23.49938 -22.30810 -20.86417 -20.50835 -20.03624 -18.88520 -18.46222 -16.80369 -16.51091 -16.37228 -15.59709 -15.31572 -15.11101 -14.71713 -14.50280 -14.35454 -14.29409 -14.23555 -14.09060 -13.70859 -13.24805 -13.05278 -12.83376 -12.75130 -12.43226 -12.23173 -12.15028 -12.05775 -11.63827 -11.52285 -11.36919 -11.32034 -11.26113 -11.03049 -10.75527 -10.53052 -9.86010 -9.47294 -9.10656 -8.15083 -6.23053 1.16558 1.35825 1.37851 1.49558 1.93539 2.19874 2.41040 3.06061 3.17828 3.72585 3.97832 4.00871 4.11900 4.16639 4.31313 4.42909 4.45524 4.50113 4.62926 4.67378 4.75217 4.83577 4.87888 4.91056 4.98513 5.04155 5.10916 5.15270 5.18871 5.20968 5.31818 5.33516 5.36047 5.49980 5.54776 5.57912 5.65668 5.79524 5.88463 6.01813 6.19758 6.35158 6.39459 6.61073 6.91735 6.93260 7.44019 8.97354 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.022151 B = 0.005778 C = 0.005058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.757784 B = 4844.698655 C = 5534.915177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.090 4.090 3 H 0.094 0.906 4 C 0.040 3.960 5 C -0.510 4.510 6 H 0.051 0.949 7 C 0.000 4.000 8 N -0.935 5.935 9 Si 0.956 3.044 10 H -0.264 1.264 11 H -0.276 1.276 12 H -0.283 1.283 13 C 0.073 3.927 14 N -0.529 5.529 15 C 0.052 3.948 16 C -0.111 4.111 17 C -0.114 4.114 18 C -0.099 4.099 19 C 0.167 3.833 20 H 0.057 0.943 21 C 0.081 3.919 22 C -0.294 4.294 23 C 0.070 3.930 24 N -0.474 5.474 25 H 0.445 0.555 26 N -0.292 5.292 27 H 0.026 0.974 28 H 0.056 0.944 29 H 0.026 0.974 30 H -0.024 1.024 31 H -0.019 1.019 32 H 0.260 0.740 33 H 0.055 0.945 34 H 0.023 0.977 35 H 0.072 0.928 36 H 0.036 0.964 37 H 0.061 0.939 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.068 0.932 41 H 0.060 0.940 42 H 0.072 0.928 43 H 0.148 0.852 44 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.614 8.069 16.295 18.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.109 4.109 3 H 0.112 0.888 4 C 0.003 3.997 5 C -0.548 4.548 6 H 0.069 0.931 7 C -0.197 4.197 8 N -0.577 5.577 9 Si 0.782 3.218 10 H -0.188 1.188 11 H -0.202 1.202 12 H -0.209 1.209 13 C -0.055 4.055 14 N -0.255 5.255 15 C -0.075 4.075 16 C -0.148 4.148 17 C -0.152 4.152 18 C -0.137 4.137 19 C 0.057 3.943 20 H 0.075 0.925 21 C -0.085 4.085 22 C -0.324 4.324 23 C -0.078 4.078 24 N -0.183 5.183 25 H 0.291 0.709 26 N -0.116 5.116 27 H 0.045 0.955 28 H 0.075 0.925 29 H 0.045 0.955 30 H -0.006 1.006 31 H -0.001 1.001 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.041 0.959 35 H 0.090 0.910 36 H 0.055 0.945 37 H 0.080 0.920 38 H 0.105 0.895 39 H 0.099 0.901 40 H 0.087 0.913 41 H 0.079 0.921 42 H 0.090 0.910 43 H 0.166 0.834 44 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 0.058 8.621 16.142 18.300 hybrid contribution 1.344 -0.534 -1.764 2.281 sum 1.402 8.087 14.378 16.556 Atomic orbital electron populations 1.21352 0.96191 0.99008 0.99456 1.21489 0.95592 1.01658 0.92141 0.88780 1.18948 0.93560 0.93981 0.93256 1.21456 1.33660 1.07857 0.91840 0.93115 1.25879 0.95425 0.96057 1.02303 1.70115 1.40656 1.22930 1.23956 0.85529 0.78100 0.78888 0.79316 1.18822 1.20188 1.20909 1.22014 0.96971 0.95968 0.90501 1.61888 1.45416 1.14212 1.03951 1.22240 0.99883 0.94761 0.90658 1.21572 0.99018 0.97649 0.96596 1.21575 0.99702 0.97027 0.96867 1.21532 1.01425 0.97386 0.93386 1.20068 0.93662 0.90581 0.90015 0.92502 1.22106 0.91639 0.97228 0.97570 1.21593 1.00899 1.08554 1.01340 1.22939 0.88196 0.97097 0.99589 1.46399 1.09502 1.37219 1.25137 0.70950 1.77202 1.20823 1.13279 1.00329 0.95529 0.92505 0.95521 1.00558 1.00060 0.93088 0.92600 0.95871 0.90989 0.94542 0.92008 0.89514 0.90075 0.91296 0.92132 0.90965 0.83438 0.78279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.49 8.89 71.98 0.64 -3.85 16 2 C -0.09 -4.01 2.22 -10.79 -0.02 -4.03 16 3 H 0.09 4.12 3.02 -2.39 -0.01 4.11 16 4 C 0.04 2.21 4.45 29.85 0.13 2.35 16 5 C -0.51 -29.48 8.40 25.60 0.21 -29.26 16 6 H 0.05 2.89 7.06 -2.91 -0.02 2.87 16 7 C 0.00 0.01 5.46 84.66 0.46 0.47 16 8 N -0.94 -57.89 13.29 21.45 0.28 -57.60 16 9 Si 0.96 44.87 29.54 68.60 2.03 46.90 16 10 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 11 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 12 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 13 C 0.07 2.80 4.18 86.30 0.36 3.16 16 14 N -0.53 -16.50 3.89 -875.53 -3.41 -19.91 16 15 C 0.05 1.28 5.36 86.32 0.46 1.75 16 16 C -0.11 -2.14 6.09 30.64 0.19 -1.95 16 17 C -0.11 -2.04 6.00 30.67 0.18 -1.86 16 18 C -0.10 -2.31 5.34 30.65 0.16 -2.15 16 19 C 0.17 4.78 2.16 44.19 0.10 4.87 16 20 H 0.06 1.56 8.12 -2.39 -0.02 1.54 16 21 C 0.08 2.65 3.40 43.10 0.15 2.80 16 22 C -0.29 -9.23 10.44 21.99 0.23 -9.00 16 23 C 0.07 2.00 11.83 83.54 0.99 2.99 16 24 N -0.47 -14.27 7.04 -57.59 -0.41 -14.67 16 25 H 0.45 10.96 8.96 -213.33 -1.91 9.05 16 26 N -0.29 -10.08 11.13 -47.39 -0.53 -10.61 16 27 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.06 2.30 7.78 -2.39 -0.02 2.28 16 29 H 0.03 1.23 6.93 -2.39 -0.02 1.21 16 30 H -0.02 -1.46 8.14 -2.39 -0.02 -1.48 16 31 H -0.02 -1.14 8.14 -2.39 -0.02 -1.16 16 32 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 33 H 0.06 2.13 7.62 -2.39 -0.02 2.11 16 34 H 0.02 0.91 7.81 -2.39 -0.02 0.89 16 35 H 0.07 1.80 7.90 -2.38 -0.02 1.78 16 36 H 0.04 0.84 8.14 -2.39 -0.02 0.83 16 37 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 40 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.15 4.19 8.06 -2.91 -0.02 4.17 16 44 H 0.20 4.27 8.06 -2.91 -0.02 4.25 16 Total: -1.00 -70.29 341.47 1.27 -69.02 By element: Atomic # 1 Polarization: 21.53 SS G_CDS: -0.94 Total: 20.59 kcal Atomic # 6 Polarization: -37.96 SS G_CDS: 4.24 Total: -33.72 kcal Atomic # 7 Polarization: -98.74 SS G_CDS: -4.06 Total: -102.79 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -70.29 1.27 -69.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602661157.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.106 kcal (2) G-P(sol) polarization free energy of solvation -70.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds