Wall clock time and date at job start Mon Mar 30 2020 02:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47282 * 2 1 4 4 C 1.53010 * 109.47196 * 119.99713 * 2 1 3 5 5 C 1.50696 * 109.47102 * 185.00127 * 4 2 1 6 6 C 1.38382 * 120.00211 * 124.97735 * 5 4 2 7 7 N 1.32124 * 120.00287 * 180.02562 * 6 5 4 8 8 C 1.32153 * 119.99716 * 0.02562 * 7 6 5 9 9 C 1.38341 * 120.00474 * 359.97438 * 8 7 6 10 10 N 1.32127 * 120.00458 * 305.00104 * 5 4 2 11 11 N 1.46893 * 109.47304 * 239.99838 * 2 1 3 12 12 C 1.46906 * 111.00207 * 84.99969 * 11 2 1 13 13 C 1.52994 * 109.47160 * 180.02562 * 12 11 2 14 14 C 1.53002 * 109.47181 * 299.99864 * 13 12 11 15 15 C 1.52999 * 109.47318 * 59.99985 * 13 12 11 16 16 C 1.53007 * 109.46938 * 180.02562 * 13 12 11 17 17 C 1.50703 * 109.46888 * 180.02562 * 16 13 12 18 18 H 1.08000 * 120.00045 * 359.97438 * 17 16 13 19 19 C 1.37881 * 119.99659 * 179.97438 * 17 16 13 20 20 N 1.31511 * 119.99749 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 120.00041 * 0.02562 * 19 17 16 22 22 H 1.48504 * 109.47096 * 89.99900 * 21 19 17 23 23 H 1.48501 * 109.47190 * 209.99626 * 21 19 17 24 24 H 1.48502 * 109.47152 * 329.99668 * 21 19 17 25 25 H 1.08995 * 109.47119 * 59.99976 * 1 2 3 26 26 H 1.09006 * 109.46616 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47242 * 300.00050 * 1 2 3 28 28 H 1.08999 * 109.46773 * 65.00267 * 4 2 1 29 29 H 1.08996 * 109.46953 * 305.00405 * 4 2 1 30 30 H 1.08000 * 120.00109 * 0.02562 * 6 5 4 31 31 H 1.08002 * 120.00395 * 179.97438 * 8 7 6 32 32 H 1.08000 * 120.00556 * 179.97438 * 9 8 7 33 33 H 1.00909 * 111.00165 * 208.95122 * 11 2 1 34 34 H 1.08997 * 109.46609 * 300.00395 * 12 11 2 35 35 H 1.08999 * 109.46692 * 59.99615 * 12 11 2 36 36 H 1.08996 * 109.47550 * 60.00412 * 14 13 12 37 37 H 1.08999 * 109.47263 * 180.02562 * 14 13 12 38 38 H 1.09007 * 109.47068 * 299.99891 * 14 13 12 39 39 H 1.08997 * 109.47345 * 59.99878 * 15 13 12 40 40 H 1.09001 * 109.46968 * 180.02562 * 15 13 12 41 41 H 1.08996 * 109.47047 * 299.99364 * 15 13 12 42 42 H 1.08997 * 109.46925 * 299.99632 * 16 13 12 43 43 H 1.08994 * 109.47222 * 59.99794 * 16 13 12 44 44 H 0.97004 * 119.99773 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6148 1.3128 6 6 4.1516 -0.0937 2.4405 7 7 5.4684 0.0000 2.4959 8 6 6.2031 -0.4034 1.4742 9 6 5.5936 -0.9244 0.3469 10 7 4.2766 -1.0187 0.2916 11 7 2.0197 -0.6925 -1.1993 12 6 2.0825 0.2226 -2.3469 13 6 2.5951 -0.5332 -3.5744 14 6 3.9922 -1.0863 -3.2861 15 6 1.6452 -1.6890 -3.8951 16 6 2.6611 0.4200 -4.7694 17 6 3.1654 -0.3246 -5.9786 18 1 3.4144 -1.3728 -5.9024 19 6 3.3090 0.3323 -7.1824 20 7 3.7496 -0.3174 -8.2375 21 14 2.8790 2.1453 -7.3141 22 1 4.0807 2.9625 -7.0083 23 1 2.4143 2.4450 -8.6923 24 1 1.8004 2.4698 -6.3464 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.7517 -1.7715 1.2057 29 1 1.6054 -0.2617 2.1370 30 1 3.5512 0.2364 3.2753 31 1 7.2794 -0.3265 1.5193 32 1 6.1940 -1.2538 -0.4882 33 1 2.9174 -1.1205 -1.0286 34 1 1.0871 0.6162 -2.5525 35 1 2.7588 1.0462 -2.1182 36 1 3.9457 -1.7653 -2.4347 37 1 4.3576 -1.6244 -4.1607 38 1 4.6690 -0.2629 -3.0576 39 1 0.6499 -1.2950 -4.1005 40 1 2.0107 -2.2277 -4.7694 41 1 1.5987 -2.3680 -3.0438 42 1 1.6660 0.8143 -4.9749 43 1 3.3380 1.2431 -4.5406 44 1 3.8509 0.1448 -9.0843 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602663426.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:56 Heat of formation + Delta-G solvation = 33.049072 kcal Electronic energy + Delta-G solvation = -22144.831232 eV Core-core repulsion = 19096.771852 eV Total energy + Delta-G solvation = -3048.059381 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.38637 -38.07032 -36.05856 -34.27803 -32.74658 -32.01439 -30.05492 -27.56011 -27.41648 -26.25990 -25.30574 -24.58551 -23.19101 -21.89736 -20.38064 -17.95544 -17.60337 -17.24376 -16.72061 -16.18338 -15.87683 -14.90602 -14.66941 -14.35491 -14.00611 -13.78481 -13.38145 -13.07645 -12.76573 -12.60349 -12.27415 -12.24887 -12.04698 -11.81378 -11.63324 -11.51716 -11.36169 -11.14825 -10.89250 -10.85528 -10.67518 -10.41230 -10.20913 -9.73488 -9.59612 -9.45321 -9.27012 -9.15503 -8.81921 -8.45449 -7.90069 -5.95909 -3.91262 0.52874 0.88723 3.34464 3.42139 3.43676 3.46645 3.76016 4.00331 4.19524 4.46889 4.52073 4.59522 4.82902 4.97234 5.03458 5.21198 5.34900 5.37598 5.38280 5.56142 5.68117 5.72632 5.81432 5.85867 6.01005 6.05209 6.11829 6.29443 6.32517 6.41122 6.58230 6.72205 6.80402 6.89718 7.01815 7.18321 7.23697 7.28428 7.42630 7.50380 7.53432 7.56735 7.91267 8.13138 8.65383 9.10718 9.67765 11.17311 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.020526 B = 0.004487 C = 0.004077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.771855 B = 6238.656706 C = 6865.862285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.090 3.910 3 H 0.035 0.965 4 C -0.073 4.073 5 C 0.084 3.916 6 C 0.048 3.952 7 N -0.436 5.436 8 C 0.038 3.962 9 C 0.064 3.936 10 N -0.432 5.432 11 N -0.689 5.689 12 C 0.072 3.928 13 C -0.047 4.047 14 C -0.127 4.127 15 C -0.116 4.116 16 C -0.005 4.005 17 C -0.504 4.504 18 H 0.078 0.922 19 C 0.064 3.936 20 N -0.907 5.907 21 Si 0.874 3.126 22 H -0.280 1.280 23 H -0.289 1.289 24 H -0.267 1.267 25 H 0.057 0.943 26 H 0.062 0.938 27 H 0.049 0.951 28 H 0.097 0.903 29 H 0.089 0.911 30 H 0.167 0.833 31 H 0.170 0.830 32 H 0.174 0.826 33 H 0.365 0.635 34 H 0.060 0.940 35 H 0.013 0.987 36 H 0.042 0.958 37 H 0.065 0.935 38 H 0.034 0.966 39 H 0.037 0.963 40 H 0.058 0.942 41 H 0.044 0.956 42 H 0.013 0.987 43 H 0.005 0.995 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.682 -0.234 22.341 22.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.021 4.021 3 H 0.053 0.947 4 C -0.112 4.112 5 C -0.057 4.057 6 C -0.113 4.113 7 N -0.150 5.150 8 C -0.121 4.121 9 C -0.095 4.095 10 N -0.148 5.148 11 N -0.331 5.331 12 C -0.057 4.057 13 C -0.048 4.048 14 C -0.185 4.185 15 C -0.173 4.173 16 C -0.042 4.042 17 C -0.542 4.542 18 H 0.096 0.904 19 C -0.136 4.136 20 N -0.547 5.547 21 Si 0.702 3.298 22 H -0.206 1.206 23 H -0.216 1.216 24 H -0.192 1.192 25 H 0.076 0.924 26 H 0.081 0.919 27 H 0.068 0.932 28 H 0.115 0.885 29 H 0.107 0.893 30 H 0.184 0.816 31 H 0.187 0.813 32 H 0.191 0.809 33 H 0.196 0.804 34 H 0.078 0.922 35 H 0.031 0.969 36 H 0.061 0.939 37 H 0.084 0.916 38 H 0.053 0.947 39 H 0.057 0.943 40 H 0.077 0.923 41 H 0.064 0.936 42 H 0.032 0.968 43 H 0.024 0.976 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.202 -0.476 22.008 22.046 hybrid contribution 0.718 1.716 -0.104 1.863 sum -0.484 1.239 21.904 21.945 Atomic orbital electron populations 1.21792 0.94416 1.02369 1.01080 1.21367 0.95829 0.95399 0.89531 0.94737 1.20845 0.87054 1.03608 0.99663 1.22449 0.98171 0.94338 0.90695 1.23594 0.91639 0.97536 0.98481 1.68426 1.06496 1.12228 1.27893 1.23757 1.01784 0.96137 0.90421 1.23901 0.91397 0.95377 0.98874 1.67887 1.06662 1.13373 1.26911 1.60857 1.36957 1.32438 1.02890 1.22069 0.99305 0.93248 0.91110 1.20380 0.94850 0.96229 0.93294 1.21751 0.96271 0.99692 1.00748 1.21592 0.97876 0.97482 1.00382 1.19633 0.96177 0.94671 0.93752 1.21156 1.42509 0.98274 0.92241 0.90405 1.25009 0.94998 0.97667 0.95914 1.69912 1.47471 1.36391 1.00883 0.86863 0.79205 0.86576 0.77112 1.20601 1.21568 1.19157 0.92362 0.91866 0.93161 0.88495 0.89273 0.81554 0.81301 0.80923 0.80447 0.92191 0.96856 0.93947 0.91559 0.94678 0.94341 0.92294 0.93649 0.96829 0.97626 0.92965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 9.41 37.16 0.35 -1.14 16 2 C 0.09 1.08 2.63 -67.71 -0.18 0.90 16 3 H 0.03 0.45 7.80 -51.93 -0.40 0.05 16 4 C -0.07 -0.68 5.28 -27.88 -0.15 -0.83 16 5 C 0.08 0.89 6.18 -82.41 -0.51 0.39 16 6 C 0.05 0.46 10.85 -17.37 -0.19 0.27 16 7 N -0.44 -4.66 10.50 -13.06 -0.14 -4.80 16 8 C 0.04 0.36 11.22 -17.38 -0.20 0.16 16 9 C 0.06 0.66 11.22 -17.37 -0.20 0.46 16 10 N -0.43 -5.27 7.42 -9.29 -0.07 -5.34 16 11 N -0.69 -10.38 5.52 -106.73 -0.59 -10.97 16 12 C 0.07 1.27 4.45 -3.82 -0.02 1.25 16 13 C -0.05 -0.96 0.60 -154.51 -0.09 -1.05 16 14 C -0.13 -2.46 7.89 37.16 0.29 -2.16 16 15 C -0.12 -2.32 8.06 37.16 0.30 -2.02 16 16 C 0.00 -0.11 3.11 -27.88 -0.09 -0.20 16 17 C -0.50 -14.17 8.20 -34.44 -0.28 -14.45 16 18 H 0.08 2.33 5.92 -52.49 -0.31 2.02 16 19 C 0.06 1.88 5.47 -17.82 -0.10 1.78 16 20 N -0.91 -28.08 13.96 55.43 0.77 -27.31 16 21 Si 0.87 22.16 27.47 -169.99 -4.67 17.49 16 22 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 24 H -0.27 -6.56 6.54 56.52 0.37 -6.19 16 25 H 0.06 0.71 7.45 -51.93 -0.39 0.32 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.09 0.57 7.89 -51.93 -0.41 0.16 16 30 H 0.17 1.09 7.95 -52.49 -0.42 0.67 16 31 H 0.17 1.05 8.06 -52.49 -0.42 0.62 16 32 H 0.17 1.42 8.06 -52.49 -0.42 1.00 16 33 H 0.37 5.51 3.18 -39.29 -0.12 5.39 16 34 H 0.06 1.07 7.44 -51.93 -0.39 0.68 16 35 H 0.01 0.24 8.05 -51.93 -0.42 -0.17 16 36 H 0.04 0.73 6.57 -51.93 -0.34 0.39 16 37 H 0.07 1.42 6.62 -51.93 -0.34 1.08 16 38 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.06 1.30 6.62 -51.93 -0.34 0.95 16 41 H 0.04 0.83 7.60 -51.93 -0.39 0.43 16 42 H 0.01 0.34 7.20 -51.93 -0.37 -0.04 16 43 H 0.01 0.14 7.57 -51.93 -0.39 -0.26 16 44 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 343.20 15.07 5.17 5.17 Total: -1.00 -32.44 343.20 -7.74 -40.18 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -7.18 Total: 2.21 kcal Atomic # 6 Polarization: -15.59 SS G_CDS: -1.05 Total: -16.64 kcal Atomic # 7 Polarization: -48.40 SS G_CDS: -0.02 Total: -48.42 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.67 Total: 17.49 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.44 -7.74 -40.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602663426.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.225 kcal (2) G-P(sol) polarization free energy of solvation -32.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds