Wall clock time and date at job start Mon Mar 30 2020 02:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47282 * 2 1 4 4 C 1.53010 * 109.47196 * 119.99713 * 2 1 3 5 5 C 1.50696 * 109.47102 * 185.00127 * 4 2 1 6 6 C 1.38382 * 120.00211 * 124.97735 * 5 4 2 7 7 N 1.32124 * 120.00287 * 180.02562 * 6 5 4 8 8 C 1.32153 * 119.99716 * 0.02562 * 7 6 5 9 9 C 1.38341 * 120.00474 * 359.97438 * 8 7 6 10 10 N 1.32127 * 120.00458 * 305.00104 * 5 4 2 11 11 N 1.46893 * 109.47304 * 239.99838 * 2 1 3 12 12 C 1.46906 * 111.00207 * 84.99969 * 11 2 1 13 13 C 1.52994 * 109.47160 * 180.02562 * 12 11 2 14 14 C 1.53002 * 109.47181 * 299.99864 * 13 12 11 15 15 C 1.52999 * 109.47318 * 59.99985 * 13 12 11 16 16 C 1.53007 * 109.46938 * 180.02562 * 13 12 11 17 17 C 1.50703 * 109.46888 * 180.02562 * 16 13 12 18 18 H 1.08000 * 120.00045 * 359.97438 * 17 16 13 19 19 C 1.37881 * 119.99659 * 179.97438 * 17 16 13 20 20 N 1.31511 * 119.99749 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 120.00041 * 0.02562 * 19 17 16 22 22 H 1.48504 * 109.47096 * 89.99900 * 21 19 17 23 23 H 1.48501 * 109.47190 * 209.99626 * 21 19 17 24 24 H 1.48502 * 109.47152 * 329.99668 * 21 19 17 25 25 H 1.08995 * 109.47119 * 59.99976 * 1 2 3 26 26 H 1.09006 * 109.46616 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47242 * 300.00050 * 1 2 3 28 28 H 1.08999 * 109.46773 * 65.00267 * 4 2 1 29 29 H 1.08996 * 109.46953 * 305.00405 * 4 2 1 30 30 H 1.08000 * 120.00109 * 0.02562 * 6 5 4 31 31 H 1.08002 * 120.00395 * 179.97438 * 8 7 6 32 32 H 1.08000 * 120.00556 * 179.97438 * 9 8 7 33 33 H 1.00909 * 111.00165 * 208.95122 * 11 2 1 34 34 H 1.08997 * 109.46609 * 300.00395 * 12 11 2 35 35 H 1.08999 * 109.46692 * 59.99615 * 12 11 2 36 36 H 1.08996 * 109.47550 * 60.00412 * 14 13 12 37 37 H 1.08999 * 109.47263 * 180.02562 * 14 13 12 38 38 H 1.09007 * 109.47068 * 299.99891 * 14 13 12 39 39 H 1.08997 * 109.47345 * 59.99878 * 15 13 12 40 40 H 1.09001 * 109.46968 * 180.02562 * 15 13 12 41 41 H 1.08996 * 109.47047 * 299.99364 * 15 13 12 42 42 H 1.08997 * 109.46925 * 299.99632 * 16 13 12 43 43 H 1.08994 * 109.47222 * 59.99794 * 16 13 12 44 44 H 0.97004 * 119.99773 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6148 1.3128 6 6 4.1516 -0.0937 2.4405 7 7 5.4684 0.0000 2.4959 8 6 6.2031 -0.4034 1.4742 9 6 5.5936 -0.9244 0.3469 10 7 4.2766 -1.0187 0.2916 11 7 2.0197 -0.6925 -1.1993 12 6 2.0825 0.2226 -2.3469 13 6 2.5951 -0.5332 -3.5744 14 6 3.9922 -1.0863 -3.2861 15 6 1.6452 -1.6890 -3.8951 16 6 2.6611 0.4200 -4.7694 17 6 3.1654 -0.3246 -5.9786 18 1 3.4144 -1.3728 -5.9024 19 6 3.3090 0.3323 -7.1824 20 7 3.7496 -0.3174 -8.2375 21 14 2.8790 2.1453 -7.3141 22 1 4.0807 2.9625 -7.0083 23 1 2.4143 2.4450 -8.6923 24 1 1.8004 2.4698 -6.3464 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.7517 -1.7715 1.2057 29 1 1.6054 -0.2617 2.1370 30 1 3.5512 0.2364 3.2753 31 1 7.2794 -0.3265 1.5193 32 1 6.1940 -1.2538 -0.4882 33 1 2.9174 -1.1205 -1.0286 34 1 1.0871 0.6162 -2.5525 35 1 2.7588 1.0462 -2.1182 36 1 3.9457 -1.7653 -2.4347 37 1 4.3576 -1.6244 -4.1607 38 1 4.6690 -0.2629 -3.0576 39 1 0.6499 -1.2950 -4.1005 40 1 2.0107 -2.2277 -4.7694 41 1 1.5987 -2.3680 -3.0438 42 1 1.6660 0.8143 -4.9749 43 1 3.3380 1.2431 -4.5406 44 1 3.8509 0.1448 -9.0843 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602663426.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:56 Heat of formation + Delta-G solvation = 12.131175 kcal Electronic energy + Delta-G solvation = -22145.738300 eV Core-core repulsion = 19096.771852 eV Total energy + Delta-G solvation = -3048.966449 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.11869 -39.41921 -37.31536 -35.10377 -34.53865 -33.23133 -31.25738 -29.37221 -28.29300 -27.88767 -26.64133 -25.50615 -24.24406 -23.51092 -21.34273 -19.46686 -18.87587 -18.52345 -17.92500 -16.99151 -16.87199 -16.36454 -15.73674 -15.66250 -15.60637 -15.04417 -14.84265 -14.32734 -14.14099 -13.91057 -13.68945 -13.51617 -13.01695 -12.95446 -12.86452 -12.65031 -12.57755 -12.47997 -12.38706 -12.20681 -12.15239 -12.01788 -11.79673 -11.69258 -11.34373 -10.96769 -10.78224 -10.70578 -10.14852 -10.01532 -9.08453 -8.22215 -6.22123 -0.17495 0.14102 1.33361 1.35596 1.46918 2.38489 2.71197 3.06911 3.12437 3.33947 3.45671 3.54473 3.83485 4.06032 4.15398 4.18406 4.24322 4.33271 4.35576 4.50827 4.59032 4.65895 4.74306 4.81596 4.84623 4.90614 4.96983 4.99013 5.08008 5.12225 5.19843 5.21483 5.36077 5.42519 5.43429 5.49882 5.53622 5.63782 5.76604 5.82219 6.27055 6.33180 6.43909 6.78592 6.84496 6.98041 7.40122 8.93976 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.020526 B = 0.004487 C = 0.004077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.771855 B = 6238.656706 C = 6865.862285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.086 3.914 3 H 0.026 0.974 4 C -0.066 4.066 5 C 0.069 3.931 6 C 0.050 3.950 7 N -0.457 5.457 8 C 0.041 3.959 9 C 0.049 3.951 10 N -0.462 5.462 11 N -0.693 5.693 12 C 0.086 3.914 13 C -0.049 4.049 14 C -0.114 4.114 15 C -0.106 4.106 16 C -0.001 4.001 17 C -0.502 4.502 18 H 0.046 0.954 19 C 0.004 3.996 20 N -0.953 5.953 21 Si 0.938 3.062 22 H -0.271 1.271 23 H -0.286 1.286 24 H -0.253 1.253 25 H 0.040 0.960 26 H 0.062 0.938 27 H 0.078 0.922 28 H 0.096 0.904 29 H 0.125 0.875 30 H 0.197 0.803 31 H 0.196 0.804 32 H 0.185 0.815 33 H 0.365 0.635 34 H 0.059 0.941 35 H 0.006 0.994 36 H 0.064 0.936 37 H 0.036 0.964 38 H 0.036 0.964 39 H 0.038 0.962 40 H 0.029 0.971 41 H 0.064 0.936 42 H 0.011 0.989 43 H 0.006 0.994 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.417 1.023 25.040 25.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.024 4.024 3 H 0.044 0.956 4 C -0.104 4.104 5 C -0.071 4.071 6 C -0.109 4.109 7 N -0.172 5.172 8 C -0.118 4.118 9 C -0.110 4.110 10 N -0.179 5.179 11 N -0.336 5.336 12 C -0.044 4.044 13 C -0.049 4.049 14 C -0.172 4.172 15 C -0.163 4.163 16 C -0.039 4.039 17 C -0.540 4.540 18 H 0.064 0.936 19 C -0.192 4.192 20 N -0.594 5.594 21 Si 0.763 3.237 22 H -0.197 1.197 23 H -0.212 1.212 24 H -0.177 1.177 25 H 0.059 0.941 26 H 0.081 0.919 27 H 0.096 0.904 28 H 0.115 0.885 29 H 0.143 0.857 30 H 0.214 0.786 31 H 0.213 0.787 32 H 0.202 0.798 33 H 0.195 0.805 34 H 0.077 0.923 35 H 0.024 0.976 36 H 0.082 0.918 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.057 0.943 40 H 0.048 0.952 41 H 0.082 0.918 42 H 0.029 0.971 43 H 0.024 0.976 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.940 0.777 24.732 24.821 hybrid contribution 0.982 1.237 -0.902 1.819 sum -0.958 2.014 23.831 23.935 Atomic orbital electron populations 1.21767 0.93332 1.02516 1.01624 1.21480 0.96589 0.94961 0.89371 0.95637 1.20865 0.86395 1.03554 0.99597 1.22695 0.98704 0.94783 0.90888 1.24051 0.91594 0.96396 0.98906 1.68497 1.07196 1.13017 1.28470 1.24169 1.03028 0.94925 0.89687 1.24171 0.91160 0.95887 0.99793 1.67793 1.07661 1.14327 1.28118 1.60856 1.37068 1.32132 1.03508 1.21776 0.98718 0.92937 0.90943 1.20342 0.95599 0.95737 0.93217 1.21601 0.95646 0.99757 1.00175 1.21476 0.97554 0.97471 0.99812 1.19584 0.95467 0.95046 0.93830 1.21401 1.41582 0.97238 0.93806 0.93627 1.25878 0.95203 1.02527 0.95606 1.70058 1.49308 1.38476 1.01605 0.85832 0.79555 0.80808 0.77478 1.19668 1.21161 1.17652 0.94119 0.91880 0.90361 0.88544 0.85677 0.78622 0.78705 0.79832 0.80454 0.92291 0.97578 0.91758 0.94531 0.94503 0.94316 0.95215 0.91757 0.97068 0.97607 0.92856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.54 9.41 71.98 0.68 -1.86 16 2 C 0.09 1.88 2.63 44.92 0.12 2.00 16 3 H 0.03 0.61 7.80 -2.39 -0.02 0.59 16 4 C -0.07 -1.03 5.28 29.85 0.16 -0.87 16 5 C 0.07 1.32 6.18 42.55 0.26 1.59 16 6 C 0.05 0.83 10.85 84.68 0.92 1.75 16 7 N -0.46 -8.79 10.50 -195.23 -2.05 -10.84 16 8 C 0.04 0.69 11.22 84.67 0.95 1.64 16 9 C 0.05 0.95 11.22 84.67 0.95 1.90 16 10 N -0.46 -10.61 7.42 -183.30 -1.36 -11.97 16 11 N -0.69 -19.73 5.52 -491.57 -2.71 -22.44 16 12 C 0.09 2.94 4.45 86.30 0.38 3.33 16 13 C -0.05 -1.96 0.60 -52.18 -0.03 -1.99 16 14 C -0.11 -4.43 7.89 71.98 0.57 -3.86 16 15 C -0.11 -4.25 8.06 71.98 0.58 -3.67 16 16 C 0.00 -0.07 3.11 29.85 0.09 0.02 16 17 C -0.50 -28.95 8.20 25.60 0.21 -28.74 16 18 H 0.05 2.87 5.92 -2.91 -0.02 2.85 16 19 C 0.00 0.22 5.47 84.66 0.46 0.68 16 20 N -0.95 -60.54 13.96 21.45 0.30 -60.24 16 21 Si 0.94 45.71 27.47 68.60 1.88 47.59 16 22 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 23 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 24 H -0.25 -11.63 6.54 99.48 0.65 -10.97 16 25 H 0.04 0.90 7.45 -2.39 -0.02 0.89 16 26 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 27 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 28 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.13 1.04 7.89 -2.39 -0.02 1.02 16 30 H 0.20 1.83 7.95 -2.91 -0.02 1.80 16 31 H 0.20 2.00 8.06 -2.91 -0.02 1.98 16 32 H 0.18 2.87 8.06 -2.91 -0.02 2.84 16 33 H 0.36 10.47 3.18 -89.69 -0.29 10.18 16 34 H 0.06 2.02 7.44 -2.39 -0.02 2.01 16 35 H 0.01 0.22 8.05 -2.39 -0.02 0.20 16 36 H 0.06 2.18 6.57 -2.39 -0.02 2.16 16 37 H 0.04 1.61 6.62 -2.39 -0.02 1.59 16 38 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 39 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.03 1.33 6.62 -2.39 -0.02 1.32 16 41 H 0.06 2.31 7.60 -2.39 -0.02 2.29 16 42 H 0.01 0.54 7.20 -2.39 -0.02 0.52 16 43 H 0.01 0.27 7.57 -2.39 -0.02 0.26 16 44 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 Total: -1.00 -71.01 343.20 3.00 -68.02 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: 0.63 Total: 17.98 kcal Atomic # 6 Polarization: -34.40 SS G_CDS: 6.30 Total: -28.10 kcal Atomic # 7 Polarization: -99.67 SS G_CDS: -5.82 Total: -105.49 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 1.88 Total: 47.59 kcal Total: -71.01 3.00 -68.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602663426.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.146 kcal (2) G-P(sol) polarization free energy of solvation -71.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds