Wall clock time and date at job start Mon Mar 30 2020 02:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47255 * 2 1 4 4 C 1.53001 * 109.46878 * 240.00274 * 2 1 3 5 5 C 1.50705 * 109.47068 * 65.00212 * 4 2 1 6 6 H 1.07998 * 120.00238 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99926 * 179.97438 * 5 4 2 8 8 N 1.31511 * 120.00297 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99936 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.46784 * 90.00350 * 9 7 5 11 11 H 1.48500 * 109.46992 * 210.00453 * 9 7 5 12 12 H 1.48499 * 109.47261 * 330.00469 * 9 7 5 13 13 C 1.52999 * 109.46943 * 120.00642 * 2 1 3 14 14 N 1.46900 * 109.46964 * 185.32705 * 13 2 1 15 15 C 1.47445 * 110.99784 * 75.61243 * 14 13 2 16 16 C 1.54320 * 107.23680 * 123.25463 * 15 14 13 17 17 C 1.55141 * 103.01458 * 22.28374 * 16 15 14 18 18 H 1.09000 * 110.99302 * 82.43637 * 17 16 15 19 19 C 1.50702 * 110.98982 * 206.21842 * 17 16 15 20 20 N 1.30502 * 125.64959 * 58.23294 * 19 17 16 21 21 C 1.34131 * 109.25479 * 179.89619 * 20 19 17 22 22 C 1.34670 * 108.02003 * 0.37620 * 21 20 19 23 23 N 1.35042 * 125.64820 * 238.55157 * 19 17 16 24 24 C 1.46500 * 126.39921 * 359.93384 * 23 19 17 25 25 C 1.47845 * 110.99807 * 196.45100 * 14 13 2 26 26 H 1.09000 * 109.47538 * 174.90280 * 1 2 3 27 27 H 1.09000 * 109.46792 * 294.90796 * 1 2 3 28 28 H 1.09004 * 109.46876 * 54.89974 * 1 2 3 29 29 H 1.09001 * 109.47278 * 185.00249 * 4 2 1 30 30 H 1.08998 * 109.47229 * 305.00341 * 4 2 1 31 31 H 0.96998 * 120.00751 * 179.97438 * 8 7 5 32 32 H 1.08995 * 109.47126 * 305.32897 * 13 2 1 33 33 H 1.09003 * 109.46749 * 65.33107 * 13 2 1 34 34 H 1.08998 * 109.88560 * 242.66464 * 15 14 13 35 35 H 1.09000 * 109.88811 * 3.68340 * 15 14 13 36 36 H 1.08996 * 110.70232 * 140.66266 * 16 15 14 37 37 H 1.08993 * 110.70238 * 263.72998 * 16 15 14 38 38 H 1.07998 * 125.98795 * 180.11603 * 21 20 19 39 39 H 1.08001 * 126.58905 * 179.81803 * 22 21 20 40 40 H 1.08995 * 109.46935 * 90.00911 * 24 23 19 41 41 H 1.08999 * 109.46871 * 210.00337 * 24 23 19 42 42 H 1.08995 * 109.47212 * 330.00028 * 24 23 19 43 43 H 1.08996 * 110.37565 * 332.46504 * 25 14 13 44 44 H 1.08997 * 110.37143 * 94.81280 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0572 -2.4766 6 1 1.0807 0.9748 -2.3757 7 6 1.9932 -0.4015 -3.7283 8 7 2.6762 -1.5185 -3.8513 9 14 1.4996 0.5638 -5.2496 10 1 2.5652 1.5432 -5.5816 11 1 1.3128 -0.3698 -6.3892 12 1 0.2284 1.2853 -4.9873 13 6 2.0400 -0.7214 1.2492 14 7 3.5033 -0.6110 1.3152 15 6 3.9125 0.7378 1.7479 16 6 4.7905 0.5680 3.0055 17 6 5.2966 -0.8935 2.8835 18 1 6.1597 -0.9538 2.2206 19 6 5.6193 -1.4679 4.2388 20 7 4.7859 -1.5758 5.2373 21 6 5.4165 -2.1334 6.2816 22 6 6.6912 -2.3728 5.9191 23 7 6.8204 -1.9508 4.6233 24 6 8.0347 -2.0121 3.8061 25 6 4.0671 -1.5994 2.2592 26 1 -0.3634 -1.0236 -0.0913 27 1 -0.3633 0.4328 0.9321 28 1 -0.3633 0.5909 -0.8408 29 1 3.1263 -0.7995 -1.2057 30 1 1.6053 -1.7197 -1.2953 31 1 2.9235 -1.8414 -4.7319 32 1 1.6008 -0.2657 2.1366 33 1 1.7566 -1.7729 1.2025 34 1 4.4860 1.2225 0.9578 35 1 3.0315 1.3341 1.9854 36 1 5.6260 1.2677 2.9895 37 1 4.1970 0.6988 3.9103 38 1 4.9797 -2.3484 7.2456 39 1 7.4630 -2.8136 6.5326 40 1 8.6058 -1.0927 3.9344 41 1 8.6405 -2.8626 4.1188 42 1 7.7614 -2.1268 2.7572 43 1 3.3382 -1.8453 3.0314 44 1 4.3758 -2.4992 1.7271 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602667509.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:07 Heat of formation + Delta-G solvation = 54.534788 kcal Electronic energy + Delta-G solvation = -21682.837958 eV Core-core repulsion = 18635.710268 eV Total energy + Delta-G solvation = -3047.127690 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.23510 -38.78589 -35.27592 -34.17058 -32.52267 -31.33121 -29.50359 -28.01056 -27.13988 -26.84469 -25.02125 -22.77654 -22.27521 -21.30695 -20.72538 -19.44017 -18.46059 -17.36918 -16.27248 -15.83480 -15.75419 -15.33972 -14.54038 -14.37154 -13.76117 -13.48863 -13.42369 -13.20484 -13.17371 -12.98761 -12.73502 -12.53673 -12.10680 -11.83183 -11.41642 -11.25869 -11.19678 -11.01877 -10.81069 -10.72543 -10.53731 -10.25985 -10.08452 -9.98854 -9.73832 -9.56693 -8.99431 -8.78463 -8.46488 -8.18522 -7.73008 -5.83821 -3.83742 1.88651 2.60629 3.03863 3.39596 3.45712 3.48952 4.10981 4.46339 4.54008 4.57879 4.65366 4.78647 4.85777 4.87667 5.03386 5.16724 5.35675 5.45430 5.49635 5.51590 5.66637 5.76078 5.85493 5.89215 6.01589 6.11894 6.17033 6.18914 6.23525 6.35243 6.44055 6.47787 6.61629 6.65121 7.01131 7.06797 7.12829 7.37549 7.46352 7.63167 7.91350 8.02487 8.14294 8.27147 8.63480 9.24407 9.78033 11.27391 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.028508 B = 0.003507 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.951848 B = 7981.688611 C = 8467.056539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.082 4.082 3 H 0.055 0.945 4 C 0.036 3.964 5 C -0.511 4.511 6 H 0.051 0.949 7 C 0.055 3.945 8 N -0.896 5.896 9 Si 0.884 3.116 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.276 1.276 13 C 0.061 3.939 14 N -0.514 5.514 15 C 0.046 3.954 16 C -0.125 4.125 17 C -0.017 4.017 18 H 0.095 0.905 19 C 0.225 3.775 20 N -0.487 5.487 21 C -0.028 4.028 22 C -0.066 4.066 23 N -0.460 5.460 24 C 0.069 3.931 25 C 0.059 3.941 26 H 0.045 0.955 27 H 0.027 0.973 28 H 0.060 0.940 29 H 0.032 0.968 30 H 0.008 0.992 31 H 0.257 0.743 32 H 0.023 0.977 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.057 0.943 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.168 0.832 39 H 0.172 0.828 40 H 0.077 0.923 41 H 0.085 0.915 42 H 0.091 0.909 43 H 0.057 0.943 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.373 -0.446 18.682 21.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.101 4.101 3 H 0.073 0.927 4 C -0.001 4.001 5 C -0.549 4.549 6 H 0.070 0.930 7 C -0.145 4.145 8 N -0.536 5.536 9 Si 0.713 3.287 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.201 1.201 13 C -0.067 4.067 14 N -0.238 5.238 15 C -0.082 4.082 16 C -0.165 4.165 17 C -0.038 4.038 18 H 0.113 0.887 19 C -0.037 4.037 20 N -0.205 5.205 21 C -0.177 4.177 22 C -0.199 4.199 23 N -0.142 5.142 24 C -0.074 4.074 25 C -0.070 4.070 26 H 0.064 0.936 27 H 0.047 0.953 28 H 0.079 0.921 29 H 0.051 0.949 30 H 0.026 0.974 31 H 0.066 0.934 32 H 0.041 0.959 33 H 0.084 0.916 34 H 0.097 0.903 35 H 0.076 0.924 36 H 0.089 0.911 37 H 0.095 0.905 38 H 0.185 0.815 39 H 0.189 0.811 40 H 0.095 0.905 41 H 0.104 0.896 42 H 0.110 0.890 43 H 0.075 0.925 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 9.947 -0.434 17.958 20.534 hybrid contribution 0.471 0.246 0.016 0.532 sum 10.419 -0.187 17.974 20.776 Atomic orbital electron populations 1.21702 0.96560 1.01163 0.99574 1.21198 0.94056 0.99234 0.95605 0.92687 1.19045 0.97384 0.94426 0.89270 1.21341 1.34082 1.08066 0.91428 0.93031 1.24987 0.95583 0.95085 0.98827 1.69976 1.39410 1.21236 1.22985 0.86721 0.78817 0.79884 0.83290 1.20888 1.21456 1.20076 1.22446 0.85885 1.00870 0.97509 1.63568 1.11198 1.02499 1.46500 1.22845 0.98562 0.91733 0.95089 1.22816 0.99889 0.94115 0.99635 1.20709 0.99824 0.95691 0.87575 0.88650 1.23076 0.81300 1.01848 0.97510 1.70212 1.31478 1.19253 0.99589 1.22297 0.91552 1.04678 0.99138 1.22656 1.00741 1.10029 0.86445 1.45334 1.10860 1.46398 1.11654 1.22084 0.85290 1.03618 0.96415 1.22989 0.94096 0.95998 0.93868 0.93557 0.95348 0.92091 0.94916 0.97354 0.93350 0.95893 0.91584 0.90295 0.92437 0.91091 0.90518 0.81473 0.81066 0.90464 0.89594 0.89013 0.92517 0.90357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.58 8.92 37.16 0.33 -2.25 16 2 C -0.08 -1.73 2.38 -90.62 -0.22 -1.94 16 3 H 0.05 1.18 7.46 -51.93 -0.39 0.79 16 4 C 0.04 0.94 4.40 -27.88 -0.12 0.82 16 5 C -0.51 -14.59 8.47 -34.44 -0.29 -14.88 16 6 H 0.05 1.44 7.06 -52.49 -0.37 1.07 16 7 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 8 N -0.90 -27.45 13.29 55.43 0.74 -26.71 16 9 Si 0.88 22.08 29.54 -169.99 -5.02 17.06 16 10 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 C 0.06 1.11 3.97 -3.82 -0.02 1.10 16 14 N -0.51 -8.93 4.50 -231.25 -1.04 -9.97 16 15 C 0.05 0.69 6.23 -2.83 -0.02 0.67 16 16 C -0.13 -1.60 6.40 -24.91 -0.16 -1.75 16 17 C -0.02 -0.22 3.38 -89.63 -0.30 -0.52 16 18 H 0.10 1.09 6.82 -51.93 -0.35 0.74 16 19 C 0.23 2.92 6.59 -155.41 -1.02 1.90 16 20 N -0.49 -7.06 10.91 -10.81 -0.12 -7.18 16 21 C -0.03 -0.33 11.87 -17.81 -0.21 -0.54 16 22 C -0.07 -0.64 11.58 -16.56 -0.19 -0.84 16 23 N -0.46 -4.78 3.15 -121.28 -0.38 -5.16 16 24 C 0.07 0.44 10.86 59.85 0.65 1.09 16 25 C 0.06 0.90 6.09 -2.30 -0.01 0.89 16 26 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 27 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 1.26 7.11 -51.93 -0.37 0.89 16 29 H 0.03 0.92 7.63 -51.93 -0.40 0.53 16 30 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 32 H 0.02 0.39 7.78 -51.93 -0.40 -0.01 16 33 H 0.07 1.24 7.99 -51.93 -0.42 0.82 16 34 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 35 H 0.06 0.86 7.19 -51.93 -0.37 0.49 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.08 1.05 7.95 -51.93 -0.41 0.64 16 38 H 0.17 1.53 8.06 -52.49 -0.42 1.11 16 39 H 0.17 1.05 8.06 -52.49 -0.42 0.63 16 40 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.09 0.58 7.05 -51.93 -0.37 0.21 16 43 H 0.06 0.91 7.50 -51.93 -0.39 0.52 16 44 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 350.41 15.07 5.28 5.28 Total: -1.00 -33.52 350.41 -9.83 -43.35 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -7.60 Total: -1.91 kcal Atomic # 6 Polarization: -13.07 SS G_CDS: -1.68 Total: -14.75 kcal Atomic # 7 Polarization: -48.22 SS G_CDS: -0.81 Total: -49.03 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.52 -9.83 -43.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602667509.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.886 kcal (2) G-P(sol) polarization free energy of solvation -33.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds