Wall clock time and date at job start Mon Mar 30 2020 02:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47343 * 2 1 4 4 C 1.53000 * 109.47172 * 240.00093 * 2 1 3 5 5 C 1.50693 * 109.47112 * 64.99856 * 4 2 1 6 6 H 1.08004 * 120.00316 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99858 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99900 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 120.00309 * 359.97438 * 7 5 4 10 10 H 1.48508 * 109.46968 * 90.00055 * 9 7 5 11 11 H 1.48495 * 109.47147 * 209.99906 * 9 7 5 12 12 H 1.48497 * 109.46962 * 330.00304 * 9 7 5 13 13 C 1.52998 * 109.47129 * 120.00140 * 2 1 3 14 14 N 1.46897 * 109.47322 * 296.05031 * 13 2 1 15 15 C 1.47844 * 111.00210 * 173.42960 * 14 13 2 16 16 C 1.55117 * 104.90297 * 146.24394 * 15 14 13 17 17 C 1.55134 * 101.56121 * 323.15811 * 16 15 14 18 18 H 1.09001 * 110.70462 * 276.96960 * 17 16 15 19 19 C 1.50702 * 110.70997 * 153.90746 * 17 16 15 20 20 N 1.30500 * 125.64678 * 303.83724 * 19 17 16 21 21 C 1.34127 * 109.25493 * 179.97438 * 20 19 17 22 22 C 1.34665 * 108.02191 * 359.97438 * 21 20 19 23 23 N 1.35038 * 125.65008 * 123.52192 * 19 17 16 24 24 C 1.46496 * 126.40053 * 0.02562 * 23 19 17 25 25 C 1.47443 * 111.00291 * 294.27960 * 14 13 2 26 26 H 1.08997 * 109.47215 * 64.84568 * 1 2 3 27 27 H 1.08999 * 109.46972 * 184.84675 * 1 2 3 28 28 H 1.09003 * 109.47035 * 304.84492 * 1 2 3 29 29 H 1.09003 * 109.47391 * 185.00566 * 4 2 1 30 30 H 1.09004 * 109.46781 * 304.99748 * 4 2 1 31 31 H 0.96995 * 120.00405 * 179.97438 * 8 7 5 32 32 H 1.08998 * 109.47501 * 176.05448 * 13 2 1 33 33 H 1.09001 * 109.47606 * 56.05184 * 13 2 1 34 34 H 1.09002 * 110.37650 * 265.19363 * 15 14 13 35 35 H 1.08991 * 110.37500 * 27.53818 * 15 14 13 36 36 H 1.09001 * 111.14488 * 205.04927 * 16 15 14 37 37 H 1.08998 * 110.92237 * 81.17099 * 16 15 14 38 38 H 1.07998 * 125.99123 * 180.02562 * 21 20 19 39 39 H 1.07995 * 126.59569 * 180.02562 * 22 21 20 40 40 H 1.08996 * 109.46986 * 89.99474 * 24 23 19 41 41 H 1.08998 * 109.47785 * 210.00012 * 24 23 19 42 42 H 1.08999 * 109.47310 * 330.00255 * 24 23 19 43 43 H 1.08993 * 109.89420 * 117.33279 * 25 14 13 44 44 H 1.09002 * 109.88412 * 356.13482 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6414 0.0570 -2.4765 6 1 1.0806 0.9746 -2.3757 7 6 1.9924 -0.4023 -3.7283 8 7 1.6440 0.2767 -4.7994 9 14 2.9628 -1.9888 -3.9029 10 1 2.0235 -3.1333 -4.0190 11 1 3.8108 -1.9191 -5.1198 12 1 3.8252 -2.1755 -2.7085 13 6 2.0400 -0.7213 1.2492 14 7 1.6298 0.0240 2.4468 15 6 1.9683 -0.7224 3.6772 16 6 2.3213 0.3689 4.7215 17 6 3.0503 1.4176 3.8410 18 1 4.0972 1.1461 3.7055 19 6 2.9324 2.7938 4.4435 20 7 1.8161 3.4006 4.7413 21 6 2.0927 4.6069 5.2586 22 6 3.4312 4.7528 5.2828 23 7 3.9645 3.6010 4.7704 24 6 5.3889 3.3012 4.6047 25 6 2.2891 1.3418 2.5007 26 1 -0.3633 0.4368 -0.9302 27 1 -0.3633 -1.0240 0.0868 28 1 -0.3633 0.5872 0.8434 29 1 3.1264 -0.7996 -1.2056 30 1 1.6054 -1.7198 -1.2951 31 1 1.8912 -0.0462 -5.6800 32 1 3.1277 -0.7829 1.2146 33 1 1.6201 -1.7265 1.2853 34 1 1.1125 -1.3080 4.0134 35 1 2.8277 -1.3700 3.5040 36 1 2.9854 -0.0239 5.4915 37 1 1.4188 0.7903 5.1643 38 1 1.3688 5.3333 5.5972 39 1 3.9787 5.6119 5.6413 40 1 5.7190 3.6375 3.6219 41 1 5.9609 3.8166 5.3762 42 1 5.5466 2.2262 4.6927 43 1 1.5409 2.1330 2.4540 44 1 2.9888 1.4405 1.6708 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602667510.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:10 Heat of formation + Delta-G solvation = 57.169386 kcal Electronic energy + Delta-G solvation = -21742.367601 eV Core-core repulsion = 18695.354155 eV Total energy + Delta-G solvation = -3047.013445 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.24730 -38.97986 -35.44334 -34.18699 -32.64488 -31.50500 -29.56700 -28.10638 -27.32064 -27.10873 -25.36711 -22.88046 -22.02938 -21.31973 -20.71435 -19.54443 -18.54495 -17.45623 -16.76281 -16.04432 -15.78335 -15.36401 -14.64028 -14.15601 -13.94208 -13.74196 -13.56902 -13.30648 -13.19247 -13.01293 -12.91759 -12.65488 -12.32233 -11.93776 -11.56658 -11.52865 -11.31854 -11.12331 -10.89471 -10.81425 -10.64637 -10.36745 -9.99845 -9.72970 -9.69748 -9.67235 -9.33563 -9.00314 -8.48179 -8.46723 -8.00158 -5.98239 -3.94762 1.88333 2.58840 3.05574 3.33372 3.40443 3.43725 4.07470 4.31816 4.39505 4.49661 4.55572 4.64920 4.77717 4.84329 4.92484 5.07550 5.30763 5.31674 5.35333 5.38550 5.56531 5.61154 5.66976 5.75468 5.80105 6.02306 6.09406 6.11199 6.18832 6.28988 6.38057 6.49076 6.65258 6.68621 6.91419 7.00254 7.10953 7.19893 7.27884 7.34799 7.44601 7.54771 7.87214 8.03828 8.62301 9.08324 9.64701 11.15323 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.022813 B = 0.003714 C = 0.003584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.094355 B = 7537.400993 C = 7809.654502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.073 4.073 3 H 0.060 0.940 4 C -0.009 4.009 5 C -0.511 4.511 6 H 0.074 0.926 7 C 0.064 3.936 8 N -0.906 5.906 9 Si 0.878 3.122 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.267 1.267 13 C 0.053 3.947 14 N -0.519 5.519 15 C 0.042 3.958 16 C -0.112 4.112 17 C -0.029 4.029 18 H 0.083 0.917 19 C 0.224 3.776 20 N -0.479 5.479 21 C -0.027 4.027 22 C -0.066 4.066 23 N -0.462 5.462 24 C 0.070 3.930 25 C 0.060 3.940 26 H 0.060 0.940 27 H 0.037 0.963 28 H 0.045 0.955 29 H 0.011 0.989 30 H 0.011 0.989 31 H 0.261 0.739 32 H 0.027 0.973 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.043 0.957 36 H 0.069 0.931 37 H 0.089 0.911 38 H 0.169 0.831 39 H 0.172 0.828 40 H 0.079 0.921 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.698 3.968 23.096 24.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.092 4.092 3 H 0.079 0.921 4 C -0.047 4.047 5 C -0.549 4.549 6 H 0.092 0.908 7 C -0.136 4.136 8 N -0.545 5.545 9 Si 0.706 3.294 10 H -0.203 1.203 11 H -0.216 1.216 12 H -0.192 1.192 13 C -0.075 4.075 14 N -0.243 5.243 15 C -0.086 4.086 16 C -0.151 4.151 17 C -0.050 4.050 18 H 0.102 0.898 19 C -0.039 4.039 20 N -0.197 5.197 21 C -0.175 4.175 22 C -0.198 4.198 23 N -0.145 5.145 24 C -0.073 4.073 25 C -0.069 4.069 26 H 0.079 0.921 27 H 0.057 0.943 28 H 0.064 0.936 29 H 0.029 0.971 30 H 0.029 0.971 31 H 0.071 0.929 32 H 0.046 0.954 33 H 0.088 0.912 34 H 0.100 0.900 35 H 0.061 0.939 36 H 0.088 0.912 37 H 0.107 0.893 38 H 0.186 0.814 39 H 0.189 0.811 40 H 0.097 0.903 41 H 0.104 0.896 42 H 0.105 0.895 43 H 0.107 0.893 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.548 3.689 22.731 23.941 hybrid contribution 2.416 -0.426 -0.114 2.456 sum 8.963 3.263 22.618 24.547 Atomic orbital electron populations 1.21590 0.95184 1.00358 1.01027 1.21038 0.96513 0.99028 0.92572 0.92136 1.19616 0.95560 0.95933 0.93603 1.21147 1.35110 1.09548 0.89080 0.90801 1.25030 0.95717 0.96898 0.95960 1.69918 1.47294 1.39344 0.97969 0.86809 0.80648 0.84489 0.77486 1.20345 1.21560 1.19194 1.22545 0.97061 0.97655 0.90224 1.63630 1.56419 1.02440 1.01816 1.23069 0.99782 0.95763 0.89954 1.22771 1.00888 0.94583 0.96890 1.20861 1.00504 0.87055 0.96596 0.89837 1.22977 0.82224 0.95426 1.03278 1.70233 1.25909 1.06873 1.16714 1.22323 0.93650 0.96026 1.05501 1.22661 0.95766 0.92172 1.09220 1.45334 1.07600 1.14320 1.47213 1.22051 0.78360 1.03325 1.03581 1.22864 0.97001 0.93481 0.93580 0.92144 0.94342 0.93616 0.97112 0.97059 0.92880 0.95440 0.91181 0.90030 0.93871 0.91236 0.89259 0.81366 0.81056 0.90281 0.89614 0.89548 0.89327 0.92125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.50 8.90 37.16 0.33 -2.17 16 2 C -0.07 -1.48 2.24 -90.62 -0.20 -1.68 16 3 H 0.06 1.28 6.77 -51.93 -0.35 0.93 16 4 C -0.01 -0.22 3.52 -27.89 -0.10 -0.32 16 5 C -0.51 -14.64 8.89 -34.44 -0.31 -14.95 16 6 H 0.07 2.29 7.32 -52.48 -0.38 1.90 16 7 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 8 N -0.91 -28.27 13.96 55.43 0.77 -27.50 16 9 Si 0.88 21.97 27.47 -169.99 -4.67 17.30 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 13 C 0.05 0.88 3.93 -3.83 -0.02 0.87 16 14 N -0.52 -7.80 4.69 -231.12 -1.08 -8.89 16 15 C 0.04 0.51 6.72 -2.18 -0.01 0.49 16 16 C -0.11 -1.24 6.53 -24.48 -0.16 -1.40 16 17 C -0.03 -0.34 3.28 -89.95 -0.30 -0.63 16 18 H 0.08 0.83 6.82 -51.93 -0.35 0.47 16 19 C 0.22 2.83 6.45 -155.42 -1.00 1.83 16 20 N -0.48 -6.94 10.86 -10.82 -0.12 -7.06 16 21 C -0.03 -0.31 11.87 -17.81 -0.21 -0.53 16 22 C -0.07 -0.64 11.58 -16.56 -0.19 -0.84 16 23 N -0.46 -4.73 3.15 -121.28 -0.38 -5.11 16 24 C 0.07 0.43 10.85 59.84 0.65 1.08 16 25 C 0.06 0.87 5.70 -2.83 -0.02 0.85 16 26 H 0.06 1.35 6.82 -51.93 -0.35 0.99 16 27 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.04 0.86 7.86 -51.93 -0.41 0.45 16 29 H 0.01 0.26 7.20 -51.93 -0.37 -0.12 16 30 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 31 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 32 H 0.03 0.45 8.08 -51.93 -0.42 0.03 16 33 H 0.07 1.15 8.12 -51.93 -0.42 0.73 16 34 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.04 0.48 7.81 -51.93 -0.41 0.08 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.09 1.12 7.90 -51.93 -0.41 0.71 16 38 H 0.17 1.57 8.06 -52.49 -0.42 1.15 16 39 H 0.17 1.08 8.06 -52.49 -0.42 0.65 16 40 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.09 0.45 7.07 -51.93 -0.37 0.08 16 43 H 0.09 1.48 7.64 -51.93 -0.40 1.08 16 44 H 0.06 0.93 6.73 -51.93 -0.35 0.58 16 LS Contribution 345.66 15.07 5.21 5.21 Total: -1.00 -33.59 345.66 -9.42 -43.00 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -7.52 Total: -1.37 kcal Atomic # 6 Polarization: -13.97 SS G_CDS: -1.63 Total: -15.60 kcal Atomic # 7 Polarization: -47.74 SS G_CDS: -0.81 Total: -48.55 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.67 Total: 17.30 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.59 -9.42 -43.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602667510.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.174 kcal (2) G-P(sol) polarization free energy of solvation -33.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds