Wall clock time and date at job start Mon Mar 30 2020 02:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47343 * 2 1 4 4 C 1.53000 * 109.47172 * 240.00093 * 2 1 3 5 5 C 1.50693 * 109.47112 * 64.99856 * 4 2 1 6 6 H 1.08004 * 120.00316 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99858 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99900 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 120.00309 * 359.97438 * 7 5 4 10 10 H 1.48508 * 109.46968 * 90.00055 * 9 7 5 11 11 H 1.48495 * 109.47147 * 209.99906 * 9 7 5 12 12 H 1.48497 * 109.46962 * 330.00304 * 9 7 5 13 13 C 1.52998 * 109.47129 * 120.00140 * 2 1 3 14 14 N 1.46897 * 109.47322 * 296.05031 * 13 2 1 15 15 C 1.47844 * 111.00210 * 173.42960 * 14 13 2 16 16 C 1.55117 * 104.90297 * 146.24394 * 15 14 13 17 17 C 1.55134 * 101.56121 * 323.15811 * 16 15 14 18 18 H 1.09001 * 110.70462 * 276.96960 * 17 16 15 19 19 C 1.50702 * 110.70997 * 153.90746 * 17 16 15 20 20 N 1.30500 * 125.64678 * 303.83724 * 19 17 16 21 21 C 1.34127 * 109.25493 * 179.97438 * 20 19 17 22 22 C 1.34665 * 108.02191 * 359.97438 * 21 20 19 23 23 N 1.35038 * 125.65008 * 123.52192 * 19 17 16 24 24 C 1.46496 * 126.40053 * 0.02562 * 23 19 17 25 25 C 1.47443 * 111.00291 * 294.27960 * 14 13 2 26 26 H 1.08997 * 109.47215 * 64.84568 * 1 2 3 27 27 H 1.08999 * 109.46972 * 184.84675 * 1 2 3 28 28 H 1.09003 * 109.47035 * 304.84492 * 1 2 3 29 29 H 1.09003 * 109.47391 * 185.00566 * 4 2 1 30 30 H 1.09004 * 109.46781 * 304.99748 * 4 2 1 31 31 H 0.96995 * 120.00405 * 179.97438 * 8 7 5 32 32 H 1.08998 * 109.47501 * 176.05448 * 13 2 1 33 33 H 1.09001 * 109.47606 * 56.05184 * 13 2 1 34 34 H 1.09002 * 110.37650 * 265.19363 * 15 14 13 35 35 H 1.08991 * 110.37500 * 27.53818 * 15 14 13 36 36 H 1.09001 * 111.14488 * 205.04927 * 16 15 14 37 37 H 1.08998 * 110.92237 * 81.17099 * 16 15 14 38 38 H 1.07998 * 125.99123 * 180.02562 * 21 20 19 39 39 H 1.07995 * 126.59569 * 180.02562 * 22 21 20 40 40 H 1.08996 * 109.46986 * 89.99474 * 24 23 19 41 41 H 1.08998 * 109.47785 * 210.00012 * 24 23 19 42 42 H 1.08999 * 109.47310 * 330.00255 * 24 23 19 43 43 H 1.08993 * 109.89420 * 117.33279 * 25 14 13 44 44 H 1.09002 * 109.88412 * 356.13482 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6414 0.0570 -2.4765 6 1 1.0806 0.9746 -2.3757 7 6 1.9924 -0.4023 -3.7283 8 7 1.6440 0.2767 -4.7994 9 14 2.9628 -1.9888 -3.9029 10 1 2.0235 -3.1333 -4.0190 11 1 3.8108 -1.9191 -5.1198 12 1 3.8252 -2.1755 -2.7085 13 6 2.0400 -0.7213 1.2492 14 7 1.6298 0.0240 2.4468 15 6 1.9683 -0.7224 3.6772 16 6 2.3213 0.3689 4.7215 17 6 3.0503 1.4176 3.8410 18 1 4.0972 1.1461 3.7055 19 6 2.9324 2.7938 4.4435 20 7 1.8161 3.4006 4.7413 21 6 2.0927 4.6069 5.2586 22 6 3.4312 4.7528 5.2828 23 7 3.9645 3.6010 4.7704 24 6 5.3889 3.3012 4.6047 25 6 2.2891 1.3418 2.5007 26 1 -0.3633 0.4368 -0.9302 27 1 -0.3633 -1.0240 0.0868 28 1 -0.3633 0.5872 0.8434 29 1 3.1264 -0.7996 -1.2056 30 1 1.6054 -1.7198 -1.2951 31 1 1.8912 -0.0462 -5.6800 32 1 3.1277 -0.7829 1.2146 33 1 1.6201 -1.7265 1.2853 34 1 1.1125 -1.3080 4.0134 35 1 2.8277 -1.3700 3.5040 36 1 2.9854 -0.0239 5.4915 37 1 1.4188 0.7903 5.1643 38 1 1.3688 5.3333 5.5972 39 1 3.9787 5.6119 5.6413 40 1 5.7190 3.6375 3.6219 41 1 5.9609 3.8166 5.3762 42 1 5.5466 2.2262 4.6927 43 1 1.5409 2.1330 2.4540 44 1 2.9888 1.4405 1.6708 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602667510.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:09 Heat of formation + Delta-G solvation = 35.805891 kcal Electronic energy + Delta-G solvation = -21743.293991 eV Core-core repulsion = 18695.354155 eV Total energy + Delta-G solvation = -3047.939836 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.05482 -40.10549 -37.04096 -34.91419 -34.54936 -32.90391 -30.67436 -29.24479 -28.96101 -27.78182 -26.79362 -24.49993 -23.17948 -22.15162 -21.88384 -20.68133 -19.92438 -18.91080 -18.22907 -17.16827 -16.59131 -16.39549 -16.14914 -15.61326 -15.21179 -15.14731 -14.68063 -14.43860 -14.23043 -14.06235 -13.84036 -13.75487 -13.51717 -13.33888 -13.28421 -12.79161 -12.65800 -12.44054 -12.32336 -12.21492 -12.09515 -11.74892 -11.68873 -11.39813 -11.15416 -11.00065 -10.87145 -10.72709 -10.52429 -9.31746 -9.12346 -8.24952 -6.27764 1.09191 1.37060 1.38699 1.50631 1.91719 2.17608 2.38933 3.03523 3.10128 3.37829 3.70587 3.74280 3.90175 3.99887 4.14154 4.17339 4.29700 4.36725 4.41919 4.43618 4.51142 4.59410 4.62897 4.67888 4.79317 4.87952 4.88169 4.95198 4.95452 5.02743 5.08403 5.15894 5.28295 5.38303 5.40183 5.41801 5.56252 5.69725 5.73958 5.86993 6.11267 6.19325 6.27081 6.37293 6.79906 7.20442 7.35571 8.92201 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.022813 B = 0.003714 C = 0.003584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.094355 B = 7537.400993 C = 7809.654502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.069 4.069 3 H 0.042 0.958 4 C -0.004 4.004 5 C -0.520 4.520 6 H 0.029 0.971 7 C 0.000 4.000 8 N -0.956 5.956 9 Si 0.951 3.049 10 H -0.267 1.267 11 H -0.286 1.286 12 H -0.244 1.244 13 C 0.066 3.934 14 N -0.535 5.535 15 C 0.043 3.957 16 C -0.103 4.103 17 C -0.020 4.020 18 H 0.108 0.892 19 C 0.202 3.798 20 N -0.523 5.523 21 C -0.062 4.062 22 C -0.050 4.050 23 N -0.461 5.461 24 C 0.061 3.939 25 C 0.063 3.937 26 H 0.025 0.975 27 H 0.050 0.950 28 H 0.054 0.946 29 H 0.018 0.982 30 H 0.020 0.980 31 H 0.264 0.736 32 H 0.038 0.962 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.062 0.938 36 H 0.098 0.902 37 H 0.068 0.932 38 H 0.180 0.820 39 H 0.209 0.791 40 H 0.082 0.918 41 H 0.112 0.888 42 H 0.098 0.902 43 H 0.057 0.943 44 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.284 2.175 25.360 27.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.088 4.088 3 H 0.060 0.940 4 C -0.042 4.042 5 C -0.558 4.558 6 H 0.047 0.953 7 C -0.196 4.196 8 N -0.597 5.597 9 Si 0.775 3.225 10 H -0.192 1.192 11 H -0.212 1.212 12 H -0.167 1.167 13 C -0.062 4.062 14 N -0.259 5.259 15 C -0.084 4.084 16 C -0.141 4.141 17 C -0.041 4.041 18 H 0.126 0.874 19 C -0.060 4.060 20 N -0.242 5.242 21 C -0.210 4.210 22 C -0.183 4.183 23 N -0.144 5.144 24 C -0.080 4.080 25 C -0.066 4.066 26 H 0.044 0.956 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.036 0.964 30 H 0.038 0.962 31 H 0.073 0.927 32 H 0.056 0.944 33 H 0.099 0.901 34 H 0.106 0.894 35 H 0.080 0.920 36 H 0.116 0.884 37 H 0.087 0.913 38 H 0.197 0.803 39 H 0.226 0.774 40 H 0.101 0.899 41 H 0.130 0.870 42 H 0.117 0.883 43 H 0.075 0.925 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 9.146 1.894 25.025 26.711 hybrid contribution 1.543 0.296 -0.812 1.769 sum 10.689 2.191 24.213 26.558 Atomic orbital electron populations 1.21471 0.95368 1.00847 0.99502 1.20916 0.96306 0.98199 0.93368 0.93987 1.19547 0.95916 0.95772 0.92980 1.21453 1.34337 1.08582 0.91438 0.95280 1.26043 0.97032 1.01142 0.95379 1.70087 1.49139 1.41767 0.98730 0.85643 0.79308 0.79265 0.78322 1.19248 1.21199 1.16713 1.22287 0.97476 0.97442 0.88976 1.63510 1.57090 1.02761 1.02507 1.23146 1.00828 0.95933 0.88495 1.22696 1.00524 0.93871 0.97045 1.20809 1.01369 0.87202 0.94761 0.87392 1.23024 0.82707 0.96064 1.04254 1.70141 1.27769 1.08362 1.17942 1.22721 0.95352 0.95988 1.06897 1.23225 0.95316 0.92642 1.07149 1.45592 1.08795 1.13834 1.46132 1.22377 0.76197 1.04650 1.04797 1.22675 0.96151 0.92552 0.95187 0.95611 0.93134 0.92696 0.96375 0.96203 0.92687 0.94425 0.90082 0.89439 0.91999 0.88398 0.91348 0.80279 0.77425 0.89925 0.86983 0.88340 0.92477 0.93274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.70 8.90 71.98 0.64 -4.05 16 2 C -0.07 -2.81 2.24 -10.79 -0.02 -2.83 16 3 H 0.04 1.84 6.77 -2.39 -0.02 1.83 16 4 C 0.00 -0.20 3.52 29.85 0.10 -0.10 16 5 C -0.52 -30.68 8.89 25.60 0.23 -30.45 16 6 H 0.03 1.91 7.32 -2.91 -0.02 1.89 16 7 C 0.00 -0.01 5.47 84.65 0.46 0.45 16 8 N -0.96 -61.44 13.96 21.45 0.30 -61.14 16 9 Si 0.95 44.76 27.47 68.60 1.88 46.65 16 10 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 11 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 12 H -0.24 -10.48 6.54 99.48 0.65 -9.83 16 13 C 0.07 2.08 3.93 86.30 0.34 2.42 16 14 N -0.53 -15.39 4.69 -885.12 -4.15 -19.54 16 15 C 0.04 0.92 6.72 86.85 0.58 1.50 16 16 C -0.10 -2.04 6.53 32.05 0.21 -1.83 16 17 C -0.02 -0.44 3.28 -10.36 -0.03 -0.48 16 18 H 0.11 1.81 6.82 -2.39 -0.02 1.79 16 19 C 0.20 4.96 6.45 138.13 0.89 5.85 16 20 N -0.52 -15.38 10.86 -188.14 -2.04 -17.43 16 21 C -0.06 -1.46 11.87 83.52 0.99 -0.47 16 22 C -0.05 -0.88 11.58 83.08 0.96 0.08 16 23 N -0.46 -8.51 3.15 -537.63 -1.69 -10.21 16 24 C 0.06 0.56 10.85 127.77 1.39 1.95 16 25 C 0.06 1.84 5.70 86.65 0.49 2.34 16 26 H 0.02 1.19 6.82 -2.39 -0.02 1.17 16 27 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.05 2.11 7.86 -2.39 -0.02 2.09 16 29 H 0.02 0.83 7.20 -2.39 -0.02 0.81 16 30 H 0.02 0.91 7.57 -2.38 -0.02 0.89 16 31 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 32 H 0.04 1.12 8.08 -2.39 -0.02 1.10 16 33 H 0.08 2.40 8.12 -2.39 -0.02 2.38 16 34 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.06 1.13 7.81 -2.39 -0.02 1.11 16 36 H 0.10 1.40 8.14 -2.39 -0.02 1.39 16 37 H 0.07 1.67 7.90 -2.39 -0.02 1.65 16 38 H 0.18 3.41 8.06 -2.91 -0.02 3.39 16 39 H 0.21 1.91 8.06 -2.91 -0.02 1.89 16 40 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 42 H 0.10 0.67 7.07 -2.39 -0.02 0.66 16 43 H 0.06 2.00 7.64 -2.39 -0.02 1.99 16 44 H 0.05 1.51 6.73 -2.39 -0.02 1.49 16 Total: -1.00 -76.10 345.66 2.43 -73.67 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: 0.90 Total: 13.62 kcal Atomic # 6 Polarization: -32.86 SS G_CDS: 7.23 Total: -25.62 kcal Atomic # 7 Polarization: -100.72 SS G_CDS: -7.59 Total: -108.31 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 1.88 Total: 46.65 kcal Total: -76.10 2.43 -73.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602667510.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.473 kcal (2) G-P(sol) polarization free energy of solvation -76.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds