Wall clock time and date at job start Mon Mar 30 2020 02:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.46945 * 2 1 4 4 C 1.53006 * 109.47234 * 119.99498 * 2 1 3 5 5 C 1.50698 * 109.47184 * 295.00598 * 4 2 1 6 6 H 1.08005 * 119.99819 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00046 * 180.02562 * 5 4 2 8 8 N 1.31511 * 120.00192 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99979 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47418 * 89.99710 * 9 7 5 11 11 H 1.48498 * 109.47091 * 209.99770 * 9 7 5 12 12 H 1.48508 * 109.47394 * 329.99535 * 9 7 5 13 13 C 1.52996 * 109.47185 * 239.99581 * 2 1 3 14 14 N 1.46903 * 109.47306 * 65.00202 * 13 2 1 15 15 C 1.47447 * 110.99806 * 69.86914 * 14 13 2 16 16 C 1.54319 * 107.23192 * 123.26315 * 15 14 13 17 17 C 1.55142 * 103.01782 * 22.27861 * 16 15 14 18 18 H 1.09002 * 110.98792 * 82.44185 * 17 16 15 19 19 C 1.50698 * 110.99424 * 206.21562 * 17 16 15 20 20 N 1.30509 * 125.64300 * 58.23880 * 19 17 16 21 21 C 1.34131 * 109.25313 * 179.89307 * 20 19 17 22 22 C 1.34676 * 108.01983 * 0.37566 * 21 20 19 23 23 N 1.35035 * 125.65799 * 238.55378 * 19 17 16 24 24 C 1.46503 * 126.39283 * 359.93581 * 23 19 17 25 25 C 1.47842 * 111.00120 * 190.71571 * 14 13 2 26 26 H 1.09006 * 109.47389 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47743 * 299.99957 * 1 2 3 28 28 H 1.09002 * 109.47112 * 60.00472 * 1 2 3 29 29 H 1.09001 * 109.47002 * 55.00002 * 4 2 1 30 30 H 1.08993 * 109.46955 * 175.00440 * 4 2 1 31 31 H 0.96996 * 120.00505 * 179.97438 * 8 7 5 32 32 H 1.09004 * 109.46864 * 184.99545 * 13 2 1 33 33 H 1.08995 * 109.47184 * 304.99824 * 13 2 1 34 34 H 1.09000 * 109.88667 * 242.66569 * 15 14 13 35 35 H 1.09003 * 109.89150 * 3.69364 * 15 14 13 36 36 H 1.08997 * 110.70931 * 140.66615 * 16 15 14 37 37 H 1.09002 * 110.70684 * 263.90351 * 16 15 14 38 38 H 1.07996 * 125.99245 * 180.11430 * 21 20 19 39 39 H 1.07995 * 126.58752 * 179.81322 * 22 21 20 40 40 H 1.09005 * 109.46885 * 90.00691 * 24 23 19 41 41 H 1.09000 * 109.47323 * 210.00180 * 24 23 19 42 42 H 1.08999 * 109.47400 * 330.00772 * 24 23 19 43 43 H 1.08994 * 110.37257 * 332.46413 * 25 14 13 44 44 H 1.08996 * 110.37184 * 94.80417 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6412 0.0571 2.4766 6 1 1.0804 0.9747 2.3756 7 6 1.9931 -0.4015 3.7283 8 7 2.6764 -1.5184 3.8513 9 14 1.4994 0.5636 5.2495 10 1 0.1723 0.0955 5.7238 11 1 2.5091 0.3539 6.3181 12 1 1.4245 2.0089 4.9162 13 6 2.0399 -0.7213 -1.2491 14 7 1.6514 0.0373 -2.4457 15 6 2.4042 1.3018 -2.5371 16 6 3.1299 1.3042 -3.8990 17 6 2.2966 0.3024 -4.7409 18 1 1.4146 0.7853 -5.1619 19 6 3.1367 -0.3209 -5.8257 20 7 4.2334 -1.0036 -5.6405 21 6 4.7094 -1.4065 -6.8281 22 6 3.8805 -0.9493 -7.7860 23 7 2.8827 -0.2606 -7.1506 24 6 1.7503 0.4153 -7.7887 25 6 1.8983 -0.7476 -3.6740 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3635 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.6054 -1.7197 1.2953 30 1 3.1262 -0.7993 1.2057 31 1 2.9243 -1.8409 4.7318 32 1 3.1263 -0.7994 -1.2055 33 1 1.6054 -1.7198 -1.2950 34 1 1.7179 2.1467 -2.4812 35 1 3.1309 1.3602 -1.7268 36 1 3.1057 2.2977 -4.3469 37 1 4.1566 0.9547 -3.7893 38 1 5.6032 -1.9911 -6.9884 39 1 3.9830 -1.0980 -8.8507 40 1 2.0226 1.4465 -8.0137 41 1 1.4920 -0.1021 -8.7126 42 1 0.8939 0.4045 -7.1145 43 1 2.7123 -1.4548 -3.5152 44 1 0.9924 -1.2723 -3.9775 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602667511.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:13 Heat of formation + Delta-G solvation = 52.563280 kcal Electronic energy + Delta-G solvation = -21504.986750 eV Core-core repulsion = 18457.773569 eV Total energy + Delta-G solvation = -3047.213181 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.29252 -38.88710 -35.31544 -34.23916 -32.65655 -31.29453 -29.58349 -28.09007 -27.21828 -26.68067 -25.28302 -22.90396 -22.32850 -21.36856 -20.66822 -19.51282 -18.47772 -17.45253 -16.29641 -15.94564 -15.89216 -15.28069 -14.60862 -14.41662 -13.80125 -13.73783 -13.45235 -13.27795 -13.25069 -13.06751 -12.79992 -12.57530 -12.18954 -11.73060 -11.47344 -11.31293 -11.28250 -11.09393 -10.78182 -10.72453 -10.53630 -10.21943 -10.15863 -10.04635 -9.79438 -9.56782 -9.05327 -8.88321 -8.51886 -8.26697 -7.93937 -5.91428 -3.92300 1.82654 2.53448 2.99737 3.37066 3.43156 3.46490 4.02841 4.36441 4.45299 4.53176 4.57034 4.69367 4.78156 4.79781 4.93002 5.07326 5.29336 5.39095 5.42336 5.44227 5.58870 5.75028 5.80319 5.85960 5.95497 6.06014 6.10429 6.17495 6.26692 6.30781 6.48595 6.60294 6.64186 6.78463 6.95408 7.09988 7.18703 7.28324 7.37345 7.52003 7.77590 7.93920 7.98172 8.09566 8.53730 9.14296 9.70690 11.20188 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.039663 B = 0.003057 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.780620 B = 9156.565091 C = 9440.301782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.079 4.079 3 H 0.055 0.945 4 C 0.026 3.974 5 C -0.510 4.510 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.056 3.944 14 N -0.524 5.524 15 C 0.043 3.957 16 C -0.126 4.126 17 C -0.016 4.016 18 H 0.093 0.907 19 C 0.222 3.778 20 N -0.484 5.484 21 C -0.026 4.026 22 C -0.066 4.066 23 N -0.461 5.461 24 C 0.070 3.930 25 C 0.057 3.943 26 H 0.038 0.962 27 H 0.052 0.948 28 H 0.041 0.959 29 H 0.015 0.985 30 H 0.012 0.988 31 H 0.259 0.741 32 H 0.033 0.967 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.169 0.831 39 H 0.173 0.827 40 H 0.076 0.924 41 H 0.085 0.915 42 H 0.089 0.911 43 H 0.060 0.940 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.122 4.105 -25.712 26.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.098 4.098 3 H 0.073 0.927 4 C -0.011 4.011 5 C -0.549 4.549 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.717 3.283 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.199 1.199 13 C -0.071 4.071 14 N -0.248 5.248 15 C -0.085 4.085 16 C -0.165 4.165 17 C -0.037 4.037 18 H 0.111 0.889 19 C -0.040 4.040 20 N -0.202 5.202 21 C -0.175 4.175 22 C -0.198 4.198 23 N -0.144 5.144 24 C -0.073 4.073 25 C -0.072 4.072 26 H 0.057 0.943 27 H 0.071 0.929 28 H 0.060 0.940 29 H 0.034 0.966 30 H 0.031 0.969 31 H 0.069 0.931 32 H 0.051 0.949 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.097 0.903 38 H 0.186 0.814 39 H 0.190 0.810 40 H 0.095 0.905 41 H 0.104 0.896 42 H 0.108 0.892 43 H 0.078 0.922 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.333 3.992 -24.852 25.206 hybrid contribution 0.364 0.336 -0.157 0.520 sum -0.969 4.329 -25.009 25.399 Atomic orbital electron populations 1.21574 0.95872 1.00399 1.00057 1.21196 0.95878 0.99022 0.93706 0.92671 1.19132 0.95938 0.95555 0.90490 1.21242 1.34419 1.08235 0.90993 0.92596 1.25021 0.95394 0.95120 0.99059 1.69967 1.39139 1.21310 1.23291 0.86643 0.78179 0.80440 0.83022 1.20761 1.21363 1.19935 1.22498 0.97787 0.97153 0.89679 1.63671 1.54948 1.04291 1.01910 1.22832 0.96106 0.93688 0.95875 1.22827 0.99972 0.98312 0.95411 1.20687 0.95623 0.96295 0.91053 0.88894 1.23066 0.96130 1.01897 0.82926 1.70239 1.08822 1.14177 1.26992 1.22327 1.01881 1.05163 0.88100 1.22661 0.93175 1.04437 0.99570 1.45323 1.21003 1.40807 1.07247 1.22061 0.87946 0.97951 0.99337 1.22984 1.00480 0.95086 0.88632 0.94313 0.92887 0.93955 0.96625 0.96928 0.93146 0.94880 0.91457 0.90659 0.91733 0.91076 0.90266 0.81384 0.81023 0.90501 0.89611 0.89230 0.92153 0.90621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.42 8.89 37.15 0.33 -2.09 16 2 C -0.08 -1.67 2.31 -90.62 -0.21 -1.88 16 3 H 0.05 1.18 7.04 -51.93 -0.37 0.81 16 4 C 0.03 0.69 4.45 -27.88 -0.12 0.57 16 5 C -0.51 -14.57 8.41 -34.44 -0.29 -14.85 16 6 H 0.06 1.55 7.06 -52.48 -0.37 1.18 16 7 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -27.50 13.29 55.43 0.74 -26.76 16 9 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 12 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 13 C 0.06 1.03 3.93 -3.82 -0.02 1.02 16 14 N -0.52 -8.08 4.61 -231.25 -1.07 -9.14 16 15 C 0.04 0.60 6.14 -2.83 -0.02 0.58 16 16 C -0.13 -1.52 6.40 -24.91 -0.16 -1.68 16 17 C -0.02 -0.18 3.38 -89.63 -0.30 -0.48 16 18 H 0.09 0.88 6.82 -51.93 -0.35 0.52 16 19 C 0.22 2.71 6.58 -155.42 -1.02 1.69 16 20 N -0.48 -6.92 10.91 -10.82 -0.12 -7.03 16 21 C -0.03 -0.30 11.87 -17.81 -0.21 -0.51 16 22 C -0.07 -0.61 11.58 -16.56 -0.19 -0.80 16 23 N -0.46 -4.38 3.15 -121.27 -0.38 -4.76 16 24 C 0.07 0.36 10.86 59.85 0.65 1.01 16 25 C 0.06 0.78 6.14 -2.30 -0.01 0.77 16 26 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.05 1.12 6.95 -51.93 -0.36 0.76 16 28 H 0.04 0.75 7.75 -51.93 -0.40 0.35 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 32 H 0.03 0.63 7.96 -51.93 -0.41 0.22 16 33 H 0.07 1.25 8.07 -51.93 -0.42 0.83 16 34 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.06 1.00 6.94 -51.93 -0.36 0.64 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.08 1.09 7.94 -51.93 -0.41 0.68 16 38 H 0.17 1.53 8.06 -52.49 -0.42 1.11 16 39 H 0.17 0.96 8.06 -52.49 -0.42 0.54 16 40 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 41 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 42 H 0.09 0.41 7.05 -51.93 -0.37 0.04 16 43 H 0.06 0.94 7.50 -51.93 -0.39 0.55 16 44 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 349.85 15.07 5.27 5.27 Total: -1.00 -33.31 349.85 -9.83 -43.14 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -7.58 Total: -2.57 kcal Atomic # 6 Polarization: -13.49 SS G_CDS: -1.67 Total: -15.16 kcal Atomic # 7 Polarization: -46.87 SS G_CDS: -0.83 Total: -47.70 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.31 -9.83 -43.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602667511.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.703 kcal (2) G-P(sol) polarization free energy of solvation -33.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds