Wall clock time and date at job start Mon Mar 30 2020 02:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.46945 * 2 1 4 4 C 1.53006 * 109.47234 * 119.99498 * 2 1 3 5 5 C 1.50698 * 109.47184 * 295.00598 * 4 2 1 6 6 H 1.08005 * 119.99819 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00046 * 180.02562 * 5 4 2 8 8 N 1.31511 * 120.00192 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99979 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47418 * 89.99710 * 9 7 5 11 11 H 1.48498 * 109.47091 * 209.99770 * 9 7 5 12 12 H 1.48508 * 109.47394 * 329.99535 * 9 7 5 13 13 C 1.52996 * 109.47185 * 239.99581 * 2 1 3 14 14 N 1.46903 * 109.47306 * 65.00202 * 13 2 1 15 15 C 1.47447 * 110.99806 * 69.86914 * 14 13 2 16 16 C 1.54319 * 107.23192 * 123.26315 * 15 14 13 17 17 C 1.55142 * 103.01782 * 22.27861 * 16 15 14 18 18 H 1.09002 * 110.98792 * 82.44185 * 17 16 15 19 19 C 1.50698 * 110.99424 * 206.21562 * 17 16 15 20 20 N 1.30509 * 125.64300 * 58.23880 * 19 17 16 21 21 C 1.34131 * 109.25313 * 179.89307 * 20 19 17 22 22 C 1.34676 * 108.01983 * 0.37566 * 21 20 19 23 23 N 1.35035 * 125.65799 * 238.55378 * 19 17 16 24 24 C 1.46503 * 126.39283 * 359.93581 * 23 19 17 25 25 C 1.47842 * 111.00120 * 190.71571 * 14 13 2 26 26 H 1.09006 * 109.47389 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47743 * 299.99957 * 1 2 3 28 28 H 1.09002 * 109.47112 * 60.00472 * 1 2 3 29 29 H 1.09001 * 109.47002 * 55.00002 * 4 2 1 30 30 H 1.08993 * 109.46955 * 175.00440 * 4 2 1 31 31 H 0.96996 * 120.00505 * 179.97438 * 8 7 5 32 32 H 1.09004 * 109.46864 * 184.99545 * 13 2 1 33 33 H 1.08995 * 109.47184 * 304.99824 * 13 2 1 34 34 H 1.09000 * 109.88667 * 242.66569 * 15 14 13 35 35 H 1.09003 * 109.89150 * 3.69364 * 15 14 13 36 36 H 1.08997 * 110.70931 * 140.66615 * 16 15 14 37 37 H 1.09002 * 110.70684 * 263.90351 * 16 15 14 38 38 H 1.07996 * 125.99245 * 180.11430 * 21 20 19 39 39 H 1.07995 * 126.58752 * 179.81322 * 22 21 20 40 40 H 1.09005 * 109.46885 * 90.00691 * 24 23 19 41 41 H 1.09000 * 109.47323 * 210.00180 * 24 23 19 42 42 H 1.08999 * 109.47400 * 330.00772 * 24 23 19 43 43 H 1.08994 * 110.37257 * 332.46413 * 25 14 13 44 44 H 1.08996 * 110.37184 * 94.80417 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6412 0.0571 2.4766 6 1 1.0804 0.9747 2.3756 7 6 1.9931 -0.4015 3.7283 8 7 2.6764 -1.5184 3.8513 9 14 1.4994 0.5636 5.2495 10 1 0.1723 0.0955 5.7238 11 1 2.5091 0.3539 6.3181 12 1 1.4245 2.0089 4.9162 13 6 2.0399 -0.7213 -1.2491 14 7 1.6514 0.0373 -2.4457 15 6 2.4042 1.3018 -2.5371 16 6 3.1299 1.3042 -3.8990 17 6 2.2966 0.3024 -4.7409 18 1 1.4146 0.7853 -5.1619 19 6 3.1367 -0.3209 -5.8257 20 7 4.2334 -1.0036 -5.6405 21 6 4.7094 -1.4065 -6.8281 22 6 3.8805 -0.9493 -7.7860 23 7 2.8827 -0.2606 -7.1506 24 6 1.7503 0.4153 -7.7887 25 6 1.8983 -0.7476 -3.6740 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3635 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.6054 -1.7197 1.2953 30 1 3.1262 -0.7993 1.2057 31 1 2.9243 -1.8409 4.7318 32 1 3.1263 -0.7994 -1.2055 33 1 1.6054 -1.7198 -1.2950 34 1 1.7179 2.1467 -2.4812 35 1 3.1309 1.3602 -1.7268 36 1 3.1057 2.2977 -4.3469 37 1 4.1566 0.9547 -3.7893 38 1 5.6032 -1.9911 -6.9884 39 1 3.9830 -1.0980 -8.8507 40 1 2.0226 1.4465 -8.0137 41 1 1.4920 -0.1021 -8.7126 42 1 0.8939 0.4045 -7.1145 43 1 2.7123 -1.4548 -3.5152 44 1 0.9924 -1.2723 -3.9775 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602667511.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:12 Heat of formation + Delta-G solvation = 32.206957 kcal Electronic energy + Delta-G solvation = -21505.869466 eV Core-core repulsion = 18457.773569 eV Total energy + Delta-G solvation = -3048.095898 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.06094 -40.09651 -37.00925 -34.91212 -34.56979 -32.72266 -30.66506 -29.19482 -28.59941 -27.75267 -26.78949 -24.78749 -23.30556 -22.17506 -21.99869 -20.59522 -19.91084 -18.55087 -18.13009 -16.98538 -16.72542 -16.54726 -16.26139 -15.66950 -15.07925 -14.96927 -14.54181 -14.33814 -14.29635 -14.04400 -13.88332 -13.80291 -13.42463 -13.26177 -13.22309 -12.74923 -12.61428 -12.48019 -12.39870 -12.21826 -12.18370 -11.90271 -11.67575 -11.40622 -11.05718 -10.92306 -10.85278 -10.53302 -10.52412 -9.37201 -9.18616 -8.16048 -6.25641 1.08127 1.40734 1.42407 1.53295 1.90923 2.14956 2.43120 2.96519 3.17157 3.47139 3.67536 3.76693 3.92354 3.99968 4.15116 4.19378 4.34166 4.35078 4.43901 4.48470 4.56671 4.61036 4.71450 4.72965 4.74342 4.84777 4.89759 4.96160 4.97302 5.03713 5.10183 5.25914 5.30635 5.38240 5.48765 5.52983 5.57573 5.81342 5.85839 5.90024 6.06582 6.08621 6.26651 6.32350 6.90449 7.19173 7.42642 8.96358 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.039663 B = 0.003057 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.780620 B = 9156.565091 C = 9440.301782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.069 4.069 3 H 0.054 0.946 4 C 0.032 3.968 5 C -0.527 4.527 6 H 0.063 0.937 7 C -0.005 4.005 8 N -0.938 5.938 9 Si 0.963 3.037 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.262 1.262 13 C 0.070 3.930 14 N -0.520 5.520 15 C 0.040 3.960 16 C -0.117 4.117 17 C -0.002 4.002 18 H 0.124 0.876 19 C 0.202 3.798 20 N -0.533 5.533 21 C -0.065 4.065 22 C -0.045 4.045 23 N -0.457 5.457 24 C 0.060 3.940 25 C 0.057 3.943 26 H 0.034 0.966 27 H 0.039 0.961 28 H 0.069 0.931 29 H -0.011 1.011 30 H -0.019 1.019 31 H 0.262 0.738 32 H 0.013 0.987 33 H 0.062 0.938 34 H 0.094 0.906 35 H 0.041 0.959 36 H 0.098 0.902 37 H 0.054 0.946 38 H 0.177 0.823 39 H 0.211 0.789 40 H 0.092 0.908 41 H 0.109 0.891 42 H 0.097 0.903 43 H 0.033 0.967 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.938 6.028 -27.840 28.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.088 4.088 3 H 0.072 0.928 4 C -0.006 4.006 5 C -0.565 4.565 6 H 0.081 0.919 7 C -0.202 4.202 8 N -0.579 5.579 9 Si 0.788 3.212 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.186 1.186 13 C -0.059 4.059 14 N -0.243 5.243 15 C -0.088 4.088 16 C -0.157 4.157 17 C -0.023 4.023 18 H 0.141 0.859 19 C -0.061 4.061 20 N -0.252 5.252 21 C -0.212 4.212 22 C -0.179 4.179 23 N -0.139 5.139 24 C -0.081 4.081 25 C -0.072 4.072 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.088 0.912 29 H 0.007 0.993 30 H -0.001 1.001 31 H 0.070 0.930 32 H 0.032 0.968 33 H 0.081 0.919 34 H 0.112 0.888 35 H 0.060 0.940 36 H 0.116 0.884 37 H 0.072 0.928 38 H 0.195 0.805 39 H 0.228 0.772 40 H 0.110 0.890 41 H 0.127 0.873 42 H 0.116 0.884 43 H 0.052 0.948 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.173 5.937 -27.008 27.834 hybrid contribution 0.975 -0.305 0.415 1.103 sum -2.199 5.632 -26.592 27.271 Atomic orbital electron populations 1.21464 0.94312 1.00362 1.00672 1.20990 0.96971 0.98308 0.92485 0.92767 1.19023 0.93813 0.94734 0.93001 1.21631 1.34342 1.08577 0.91938 0.91892 1.25994 0.95242 0.96140 1.02779 1.70115 1.40351 1.23122 1.24262 0.85474 0.77995 0.79310 0.78444 1.19759 1.21012 1.18597 1.22186 0.96365 0.97026 0.90287 1.63664 1.54812 1.04551 1.01321 1.22906 0.96095 0.93380 0.96374 1.22727 0.98412 0.99938 0.94583 1.20616 0.96368 0.95031 0.90297 0.85859 1.22986 0.96144 1.02715 0.84284 1.70144 1.10425 1.15564 1.29054 1.22697 1.03420 1.06885 0.88202 1.23225 0.91746 1.02092 1.00800 1.45572 1.21748 1.40167 1.06418 1.22424 0.86698 0.98724 1.00213 1.22983 1.00139 0.95337 0.88698 0.94680 0.94222 0.91184 0.99305 1.00104 0.92969 0.96838 0.91926 0.88821 0.94004 0.88375 0.92757 0.80546 0.77212 0.88994 0.87290 0.88403 0.94819 0.89373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.34 8.89 71.98 0.64 -3.70 16 2 C -0.07 -2.96 2.31 -10.79 -0.02 -2.98 16 3 H 0.05 2.34 7.04 -2.38 -0.02 2.32 16 4 C 0.03 1.75 4.45 29.85 0.13 1.89 16 5 C -0.53 -30.64 8.41 25.60 0.22 -30.42 16 6 H 0.06 3.50 7.06 -2.91 -0.02 3.48 16 7 C 0.00 -0.27 5.46 84.65 0.46 0.19 16 8 N -0.94 -59.03 13.29 21.45 0.28 -58.74 16 9 Si 0.96 45.42 29.54 68.60 2.03 47.44 16 10 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 11 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 12 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 13 C 0.07 2.65 3.93 86.30 0.34 2.98 16 14 N -0.52 -15.74 4.61 -885.55 -4.08 -19.82 16 15 C 0.04 1.09 6.14 86.65 0.53 1.62 16 16 C -0.12 -2.70 6.40 31.78 0.20 -2.50 16 17 C 0.00 -0.05 3.38 -10.16 -0.03 -0.09 16 18 H 0.12 1.85 6.82 -2.39 -0.02 1.84 16 19 C 0.20 4.67 6.58 138.13 0.91 5.58 16 20 N -0.53 -15.44 10.91 -188.13 -2.05 -17.49 16 21 C -0.06 -1.46 11.87 83.52 0.99 -0.47 16 22 C -0.04 -0.72 11.58 83.09 0.96 0.25 16 23 N -0.46 -7.44 3.15 -537.60 -1.69 -9.14 16 24 C 0.06 0.38 10.86 127.77 1.39 1.77 16 25 C 0.06 1.53 6.14 86.77 0.53 2.07 16 26 H 0.03 1.37 8.14 -2.38 -0.02 1.35 16 27 H 0.04 1.64 6.95 -2.39 -0.02 1.62 16 28 H 0.07 2.35 7.75 -2.39 -0.02 2.33 16 29 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 30 H -0.02 -1.17 8.14 -2.39 -0.02 -1.19 16 31 H 0.26 15.48 8.31 -92.71 -0.77 14.70 16 32 H 0.01 0.55 7.96 -2.38 -0.02 0.53 16 33 H 0.06 2.41 8.07 -2.39 -0.02 2.39 16 34 H 0.09 2.23 8.14 -2.39 -0.02 2.22 16 35 H 0.04 1.33 6.94 -2.39 -0.02 1.31 16 36 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.05 1.53 7.94 -2.39 -0.02 1.51 16 38 H 0.18 3.29 8.06 -2.91 -0.02 3.27 16 39 H 0.21 1.51 8.06 -2.91 -0.02 1.49 16 40 H 0.09 0.36 8.14 -2.38 -0.02 0.34 16 41 H 0.11 0.22 8.14 -2.39 -0.02 0.20 16 42 H 0.10 0.49 7.05 -2.39 -0.02 0.47 16 43 H 0.03 1.09 7.50 -2.39 -0.02 1.07 16 44 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -75.01 349.85 2.68 -72.33 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: 0.95 Total: 9.22 kcal Atomic # 6 Polarization: -31.05 SS G_CDS: 7.25 Total: -23.80 kcal Atomic # 7 Polarization: -97.65 SS G_CDS: -7.55 Total: -105.19 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.44 kcal Total: -75.01 2.68 -72.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602667511.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.537 kcal (2) G-P(sol) polarization free energy of solvation -75.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds