Wall clock time and date at job start Mon Mar 30 2020 02:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47362 * 2 1 4 4 C 1.52996 * 109.47346 * 120.00146 * 2 1 3 5 5 C 1.50700 * 109.47038 * 297.64512 * 4 2 1 6 6 H 1.07997 * 120.00199 * 359.97438 * 5 4 2 7 7 C 1.37882 * 119.99798 * 179.97438 * 5 4 2 8 8 N 1.31520 * 119.99672 * 180.02562 * 7 5 4 9 9 Si 1.86795 * 120.00232 * 359.72582 * 7 5 4 10 10 H 1.48499 * 109.47094 * 89.99854 * 9 7 5 11 11 H 1.48496 * 109.47174 * 209.99963 * 9 7 5 12 12 H 1.48508 * 109.47123 * 330.00046 * 9 7 5 13 13 C 1.53002 * 109.46777 * 240.00144 * 2 1 3 14 14 N 1.46903 * 109.46957 * 178.50029 * 13 2 1 15 15 C 1.47904 * 111.00188 * 83.29392 * 14 13 2 16 16 C 1.53991 * 107.06053 * 214.15721 * 15 14 13 17 17 C 1.54599 * 105.13767 * 1.22033 * 16 15 14 18 18 H 1.08999 * 110.72266 * 263.42438 * 17 16 15 19 19 C 1.50697 * 110.72277 * 140.31956 * 17 16 15 20 20 N 1.30500 * 125.64878 * 301.47701 * 19 17 16 21 21 C 1.34123 * 109.25661 * 180.02562 * 20 19 17 22 22 C 1.34662 * 108.02343 * 0.02562 * 21 20 19 23 23 N 1.35042 * 125.65313 * 121.17346 * 19 17 16 24 24 C 1.46499 * 126.39351 * 0.02562 * 23 19 17 25 25 C 1.48530 * 111.00146 * 325.89385 * 14 13 2 26 26 H 1.09005 * 109.47031 * 305.11424 * 1 2 3 27 27 H 1.08997 * 109.47357 * 65.11094 * 1 2 3 28 28 H 1.08993 * 109.47174 * 185.11729 * 1 2 3 29 29 H 1.09001 * 109.47306 * 177.64443 * 4 2 1 30 30 H 1.09002 * 109.47080 * 57.64752 * 4 2 1 31 31 H 0.97002 * 119.99643 * 180.02562 * 8 7 5 32 32 H 1.09001 * 109.47142 * 298.49291 * 13 2 1 33 33 H 1.08990 * 109.47413 * 58.49975 * 13 2 1 34 34 H 1.09006 * 109.91477 * 333.50823 * 15 14 13 35 35 H 1.09000 * 109.91768 * 94.60195 * 15 14 13 36 36 H 1.08998 * 110.31001 * 120.13916 * 16 15 14 37 37 H 1.09001 * 110.30642 * 242.20845 * 16 15 14 38 38 H 1.08004 * 125.98854 * 180.02562 * 21 20 19 39 39 H 1.08005 * 126.59671 * 180.02562 * 22 21 20 40 40 H 1.09002 * 109.47352 * 89.99931 * 24 23 19 41 41 H 1.09006 * 109.46686 * 210.00079 * 24 23 19 42 42 H 1.09003 * 109.47497 * 329.99560 * 24 23 19 43 43 H 1.08999 * 110.67014 * 278.15687 * 25 14 13 44 44 H 1.09003 * 110.66451 * 41.29117 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5859 0.0220 2.4790 6 1 0.9932 0.9193 2.3795 7 6 1.9272 -0.4435 3.7311 8 7 1.5305 0.2049 4.8044 9 14 2.9459 -1.9998 3.9034 10 1 4.3886 -1.6484 3.9133 11 1 2.5941 -2.6835 5.1738 12 1 2.6646 -2.9046 2.7599 13 6 2.0399 -0.7212 -1.2493 14 7 3.5085 -0.6900 -1.2676 15 6 4.0722 -1.7781 -0.4395 16 6 5.3682 -1.2388 0.1937 17 6 5.4819 0.2215 -0.3008 18 1 6.1347 0.2842 -1.1714 19 6 5.9787 1.1207 0.8017 20 7 5.4022 1.2943 1.9595 21 6 6.1214 2.1625 2.6861 22 6 7.1836 2.5418 1.9505 23 7 7.0973 1.8759 0.7576 24 6 8.0393 1.9696 -0.3605 25 6 4.0213 0.5738 -0.6794 26 1 -0.3633 0.5912 0.8407 27 1 -0.3634 0.4325 -0.9322 28 1 -0.3633 -1.0235 0.0917 29 1 3.1292 -0.7580 1.2283 30 1 1.6426 -1.7360 1.2705 31 1 1.7709 -0.1224 5.6853 32 1 1.6987 -1.7564 -1.2359 33 1 1.6548 -0.2232 -2.1390 34 1 3.3644 -2.0548 0.3419 35 1 4.2928 -2.6438 -1.0640 36 1 5.2976 -1.2657 1.2811 37 1 6.2251 -1.8219 -0.1437 38 1 5.8892 2.4985 3.6859 39 1 7.9582 3.2337 2.2470 40 1 7.7307 2.7731 -1.0293 41 1 9.0381 2.1791 0.0226 42 1 8.0501 1.0263 -0.9066 43 1 3.9979 1.3779 -1.4150 44 1 3.4489 0.8455 0.2075 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602667512.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:16 Heat of formation + Delta-G solvation = 82.635822 kcal Electronic energy + Delta-G solvation = -23246.205308 eV Core-core repulsion = 20200.296170 eV Total energy + Delta-G solvation = -3045.909138 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.83760 -39.34510 -34.96714 -33.80038 -32.41512 -31.20786 -29.42296 -27.78131 -27.54856 -26.79814 -24.81767 -23.13185 -21.87769 -20.92901 -20.25929 -19.16367 -18.57174 -17.11352 -16.70339 -15.49841 -15.47193 -15.25710 -14.33632 -14.29645 -13.75384 -13.42254 -13.21409 -12.92400 -12.91838 -12.77833 -12.66859 -12.38094 -12.07764 -11.67821 -11.37064 -11.24373 -11.07840 -10.94871 -10.78862 -10.64357 -10.39340 -10.22640 -9.74098 -9.53234 -9.38773 -9.34160 -9.29049 -8.93949 -8.30004 -8.04462 -7.66402 -5.83638 -3.77638 2.27232 2.94436 3.46243 3.50891 3.53395 3.56445 4.37465 4.64755 4.65841 4.77778 4.92646 5.00184 5.10130 5.17552 5.19964 5.36630 5.51485 5.61567 5.67632 5.76437 5.80836 5.85914 5.99002 6.05279 6.12011 6.21817 6.24683 6.35749 6.38156 6.47880 6.52087 6.56893 6.69029 6.85674 7.04883 7.10882 7.12326 7.30584 7.39640 7.44368 7.46043 7.61628 8.01035 8.55821 8.74353 9.21152 9.81677 11.30571 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.013963 B = 0.008360 C = 0.006417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.817688 B = 3348.321161 C = 4362.619179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.116 4.116 3 H 0.069 0.931 4 C -0.021 4.021 5 C -0.499 4.499 6 H 0.069 0.931 7 C 0.075 3.925 8 N -0.908 5.908 9 Si 0.870 3.130 10 H -0.272 1.272 11 H -0.294 1.294 12 H -0.270 1.270 13 C 0.046 3.954 14 N -0.514 5.514 15 C 0.016 3.984 16 C -0.118 4.118 17 C -0.004 4.004 18 H 0.085 0.915 19 C 0.210 3.790 20 N -0.452 5.452 21 C -0.017 4.017 22 C -0.074 4.074 23 N -0.466 5.466 24 C 0.073 3.927 25 C 0.027 3.973 26 H 0.064 0.936 27 H 0.032 0.968 28 H 0.044 0.956 29 H 0.036 0.964 30 H 0.008 0.992 31 H 0.258 0.742 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.080 0.920 37 H 0.065 0.935 38 H 0.167 0.833 39 H 0.169 0.831 40 H 0.073 0.927 41 H 0.081 0.919 42 H 0.084 0.916 43 H 0.071 0.929 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.611 1.544 -12.434 17.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.135 4.135 3 H 0.088 0.912 4 C -0.058 4.058 5 C -0.537 4.537 6 H 0.087 0.913 7 C -0.125 4.125 8 N -0.548 5.548 9 Si 0.698 3.302 10 H -0.198 1.198 11 H -0.221 1.221 12 H -0.195 1.195 13 C -0.083 4.083 14 N -0.237 5.237 15 C -0.111 4.111 16 C -0.157 4.157 17 C -0.025 4.025 18 H 0.103 0.897 19 C -0.052 4.052 20 N -0.169 5.169 21 C -0.166 4.166 22 C -0.206 4.206 23 N -0.150 5.150 24 C -0.070 4.070 25 C -0.101 4.101 26 H 0.083 0.917 27 H 0.051 0.949 28 H 0.063 0.937 29 H 0.054 0.946 30 H 0.026 0.974 31 H 0.068 0.932 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.096 0.904 35 H 0.087 0.913 36 H 0.099 0.901 37 H 0.084 0.916 38 H 0.185 0.815 39 H 0.187 0.813 40 H 0.092 0.908 41 H 0.100 0.900 42 H 0.103 0.897 43 H 0.089 0.911 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 12.153 1.105 -12.652 17.578 hybrid contribution 1.198 -0.182 0.960 1.546 sum 13.351 0.923 -11.692 17.771 Atomic orbital electron populations 1.21633 0.95704 1.01230 1.00111 1.21713 0.96038 1.00317 0.95473 0.91249 1.20028 0.97085 0.95304 0.93408 1.20991 1.32860 1.10951 0.88876 0.91295 1.24865 0.95262 0.96433 0.95938 1.69915 1.47090 1.40053 0.97720 0.86938 0.81867 0.84443 0.76953 1.19787 1.22092 1.19490 1.22441 0.87172 1.00769 0.97894 1.65055 1.08036 1.02356 1.48260 1.23258 0.96220 0.94977 0.96669 1.22430 0.97714 0.93525 1.02059 1.20348 0.97573 0.92512 0.92049 0.89688 1.23194 0.86603 0.98504 0.96889 1.70487 1.27908 1.16606 1.01862 1.22396 0.93707 0.99658 1.00876 1.22577 1.04757 1.05479 0.87793 1.45336 1.20801 1.34940 1.13908 1.21961 0.92680 1.03686 0.88641 1.23628 0.92726 0.92888 1.00856 0.91686 0.94941 0.93682 0.94592 0.97393 0.93216 0.91654 0.91589 0.90449 0.91335 0.90097 0.91631 0.81528 0.81339 0.90828 0.90012 0.89713 0.91090 0.87761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.47 8.88 37.16 0.33 -2.14 16 2 C -0.12 -2.34 1.84 -90.62 -0.17 -2.51 16 3 H 0.07 1.48 6.04 -51.93 -0.31 1.17 16 4 C -0.02 -0.52 1.52 -27.88 -0.04 -0.56 16 5 C -0.50 -14.41 9.00 -34.44 -0.31 -14.72 16 6 H 0.07 2.16 7.13 -52.49 -0.37 1.79 16 7 C 0.08 2.26 5.47 -17.82 -0.10 2.17 16 8 N -0.91 -28.94 13.96 55.43 0.77 -28.17 16 9 Si 0.87 22.96 27.47 -169.99 -4.67 18.29 16 10 H -0.27 -7.21 7.11 56.52 0.40 -6.81 16 11 H -0.29 -7.76 7.11 56.52 0.40 -7.35 16 12 H -0.27 -6.78 6.54 56.52 0.37 -6.41 16 13 C 0.05 0.78 5.34 -3.82 -0.02 0.76 16 14 N -0.51 -8.59 5.54 -230.45 -1.28 -9.86 16 15 C 0.02 0.28 5.67 -2.75 -0.02 0.26 16 16 C -0.12 -1.95 5.97 -25.37 -0.15 -2.10 16 17 C 0.00 -0.06 3.40 -89.91 -0.31 -0.37 16 18 H 0.08 1.07 6.85 -51.93 -0.36 0.72 16 19 C 0.21 3.62 6.46 -155.42 -1.00 2.61 16 20 N -0.45 -9.50 10.87 -10.82 -0.12 -9.61 16 21 C -0.02 -0.31 11.87 -17.82 -0.21 -0.52 16 22 C -0.07 -1.04 11.58 -16.56 -0.19 -1.23 16 23 N -0.47 -6.40 3.15 -121.27 -0.38 -6.79 16 24 C 0.07 0.62 10.83 59.85 0.65 1.27 16 25 C 0.03 0.47 4.94 -1.90 -0.01 0.46 16 26 H 0.06 1.39 6.94 -51.93 -0.36 1.03 16 27 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.04 0.87 3.06 -51.93 -0.16 0.71 16 30 H 0.01 0.20 6.84 -51.93 -0.36 -0.16 16 31 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 32 H 0.06 1.09 7.88 -51.93 -0.41 0.68 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.08 1.53 4.55 -51.93 -0.24 1.29 16 35 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.08 1.60 7.46 -51.93 -0.39 1.22 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.17 2.80 8.06 -52.48 -0.42 2.37 16 39 H 0.17 1.69 8.06 -52.48 -0.42 1.27 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.08 0.63 7.11 -51.93 -0.37 0.26 16 43 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.10 2.19 3.89 -51.93 -0.20 1.99 16 LS Contribution 331.81 15.07 5.00 5.00 Total: -1.00 -34.35 331.81 -9.14 -43.48 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -6.92 Total: 4.30 kcal Atomic # 6 Polarization: -15.08 SS G_CDS: -1.55 Total: -16.63 kcal Atomic # 7 Polarization: -53.43 SS G_CDS: -1.00 Total: -54.43 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -4.67 Total: 18.29 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -34.35 -9.14 -43.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602667512.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.117 kcal (2) G-P(sol) polarization free energy of solvation -34.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds