Wall clock time and date at job start Mon Mar 30 2020 02:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47362 * 2 1 4 4 C 1.52996 * 109.47346 * 120.00146 * 2 1 3 5 5 C 1.50700 * 109.47038 * 297.64512 * 4 2 1 6 6 H 1.07997 * 120.00199 * 359.97438 * 5 4 2 7 7 C 1.37882 * 119.99798 * 179.97438 * 5 4 2 8 8 N 1.31520 * 119.99672 * 180.02562 * 7 5 4 9 9 Si 1.86795 * 120.00232 * 359.72582 * 7 5 4 10 10 H 1.48499 * 109.47094 * 89.99854 * 9 7 5 11 11 H 1.48496 * 109.47174 * 209.99963 * 9 7 5 12 12 H 1.48508 * 109.47123 * 330.00046 * 9 7 5 13 13 C 1.53002 * 109.46777 * 240.00144 * 2 1 3 14 14 N 1.46903 * 109.46957 * 178.50029 * 13 2 1 15 15 C 1.47904 * 111.00188 * 83.29392 * 14 13 2 16 16 C 1.53991 * 107.06053 * 214.15721 * 15 14 13 17 17 C 1.54599 * 105.13767 * 1.22033 * 16 15 14 18 18 H 1.08999 * 110.72266 * 263.42438 * 17 16 15 19 19 C 1.50697 * 110.72277 * 140.31956 * 17 16 15 20 20 N 1.30500 * 125.64878 * 301.47701 * 19 17 16 21 21 C 1.34123 * 109.25661 * 180.02562 * 20 19 17 22 22 C 1.34662 * 108.02343 * 0.02562 * 21 20 19 23 23 N 1.35042 * 125.65313 * 121.17346 * 19 17 16 24 24 C 1.46499 * 126.39351 * 0.02562 * 23 19 17 25 25 C 1.48530 * 111.00146 * 325.89385 * 14 13 2 26 26 H 1.09005 * 109.47031 * 305.11424 * 1 2 3 27 27 H 1.08997 * 109.47357 * 65.11094 * 1 2 3 28 28 H 1.08993 * 109.47174 * 185.11729 * 1 2 3 29 29 H 1.09001 * 109.47306 * 177.64443 * 4 2 1 30 30 H 1.09002 * 109.47080 * 57.64752 * 4 2 1 31 31 H 0.97002 * 119.99643 * 180.02562 * 8 7 5 32 32 H 1.09001 * 109.47142 * 298.49291 * 13 2 1 33 33 H 1.08990 * 109.47413 * 58.49975 * 13 2 1 34 34 H 1.09006 * 109.91477 * 333.50823 * 15 14 13 35 35 H 1.09000 * 109.91768 * 94.60195 * 15 14 13 36 36 H 1.08998 * 110.31001 * 120.13916 * 16 15 14 37 37 H 1.09001 * 110.30642 * 242.20845 * 16 15 14 38 38 H 1.08004 * 125.98854 * 180.02562 * 21 20 19 39 39 H 1.08005 * 126.59671 * 180.02562 * 22 21 20 40 40 H 1.09002 * 109.47352 * 89.99931 * 24 23 19 41 41 H 1.09006 * 109.46686 * 210.00079 * 24 23 19 42 42 H 1.09003 * 109.47497 * 329.99560 * 24 23 19 43 43 H 1.08999 * 110.67014 * 278.15687 * 25 14 13 44 44 H 1.09003 * 110.66451 * 41.29117 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5859 0.0220 2.4790 6 1 0.9932 0.9193 2.3795 7 6 1.9272 -0.4435 3.7311 8 7 1.5305 0.2049 4.8044 9 14 2.9459 -1.9998 3.9034 10 1 4.3886 -1.6484 3.9133 11 1 2.5941 -2.6835 5.1738 12 1 2.6646 -2.9046 2.7599 13 6 2.0399 -0.7212 -1.2493 14 7 3.5085 -0.6900 -1.2676 15 6 4.0722 -1.7781 -0.4395 16 6 5.3682 -1.2388 0.1937 17 6 5.4819 0.2215 -0.3008 18 1 6.1347 0.2842 -1.1714 19 6 5.9787 1.1207 0.8017 20 7 5.4022 1.2943 1.9595 21 6 6.1214 2.1625 2.6861 22 6 7.1836 2.5418 1.9505 23 7 7.0973 1.8759 0.7576 24 6 8.0393 1.9696 -0.3605 25 6 4.0213 0.5738 -0.6794 26 1 -0.3633 0.5912 0.8407 27 1 -0.3634 0.4325 -0.9322 28 1 -0.3633 -1.0235 0.0917 29 1 3.1292 -0.7580 1.2283 30 1 1.6426 -1.7360 1.2705 31 1 1.7709 -0.1224 5.6853 32 1 1.6987 -1.7564 -1.2359 33 1 1.6548 -0.2232 -2.1390 34 1 3.3644 -2.0548 0.3419 35 1 4.2928 -2.6438 -1.0640 36 1 5.2976 -1.2657 1.2811 37 1 6.2251 -1.8219 -0.1437 38 1 5.8892 2.4985 3.6859 39 1 7.9582 3.2337 2.2470 40 1 7.7307 2.7731 -1.0293 41 1 9.0381 2.1791 0.0226 42 1 8.0501 1.0263 -0.9066 43 1 3.9979 1.3779 -1.4150 44 1 3.4489 0.8455 0.2075 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602667512.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:15 Heat of formation + Delta-G solvation = 58.562734 kcal Electronic energy + Delta-G solvation = -23247.249195 eV Core-core repulsion = 20200.296170 eV Total energy + Delta-G solvation = -3046.953025 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.01747 -40.74064 -36.55658 -34.85357 -34.50056 -32.74745 -30.85346 -29.42721 -29.01656 -27.68544 -26.24249 -25.02936 -23.26857 -22.10207 -21.73163 -20.54855 -20.01489 -18.91390 -18.22590 -16.82318 -16.64459 -16.47540 -16.34108 -15.64758 -15.16767 -14.93344 -14.73988 -14.40461 -14.29132 -13.93353 -13.82084 -13.76812 -13.53601 -13.35200 -12.87532 -12.75500 -12.57657 -12.49335 -12.29692 -12.19802 -12.02707 -11.88007 -11.63221 -11.30299 -11.18922 -10.93809 -10.66977 -10.61729 -10.44174 -9.25887 -9.11541 -8.21226 -6.17900 1.13501 1.27460 1.35008 1.38459 1.96574 2.25706 2.38894 3.10785 3.18071 3.53655 3.77875 3.86831 3.97165 4.02805 4.13613 4.21435 4.29633 4.41050 4.46265 4.47807 4.53697 4.63929 4.71732 4.74777 4.75680 4.83003 4.85888 4.98096 5.00492 5.06774 5.11012 5.21177 5.24812 5.36721 5.41906 5.43563 5.57537 5.65815 5.80251 5.90755 5.96511 6.12900 6.36500 6.39174 6.85946 7.34715 7.44018 8.96626 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.013963 B = 0.008360 C = 0.006417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.817688 B = 3348.321161 C = 4362.619179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.112 4.112 3 H 0.053 0.947 4 C -0.011 4.011 5 C -0.495 4.495 6 H 0.027 0.973 7 C 0.015 3.985 8 N -0.955 5.955 9 Si 0.933 3.067 10 H -0.278 1.278 11 H -0.290 1.290 12 H -0.247 1.247 13 C 0.053 3.947 14 N -0.499 5.499 15 C 0.015 3.985 16 C -0.117 4.117 17 C 0.004 3.996 18 H 0.125 0.875 19 C 0.197 3.803 20 N -0.521 5.521 21 C -0.074 4.074 22 C -0.038 4.038 23 N -0.458 5.458 24 C 0.063 3.937 25 C 0.027 3.973 26 H 0.028 0.972 27 H 0.068 0.932 28 H 0.048 0.952 29 H 0.042 0.958 30 H 0.003 0.997 31 H 0.258 0.742 32 H 0.074 0.926 33 H 0.092 0.908 34 H 0.044 0.956 35 H 0.099 0.901 36 H 0.038 0.962 37 H 0.100 0.900 38 H 0.155 0.845 39 H 0.214 0.786 40 H 0.090 0.910 41 H 0.109 0.891 42 H 0.100 0.900 43 H 0.087 0.913 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.341 0.514 -16.055 22.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.131 4.131 3 H 0.071 0.929 4 C -0.048 4.048 5 C -0.533 4.533 6 H 0.045 0.955 7 C -0.181 4.181 8 N -0.598 5.598 9 Si 0.759 3.241 10 H -0.204 1.204 11 H -0.216 1.216 12 H -0.170 1.170 13 C -0.075 4.075 14 N -0.222 5.222 15 C -0.113 4.113 16 C -0.156 4.156 17 C -0.017 4.017 18 H 0.143 0.857 19 C -0.066 4.066 20 N -0.239 5.239 21 C -0.222 4.222 22 C -0.172 4.172 23 N -0.141 5.141 24 C -0.078 4.078 25 C -0.102 4.102 26 H 0.047 0.953 27 H 0.087 0.913 28 H 0.068 0.932 29 H 0.060 0.940 30 H 0.021 0.979 31 H 0.067 0.933 32 H 0.092 0.908 33 H 0.111 0.889 34 H 0.062 0.938 35 H 0.117 0.883 36 H 0.057 0.943 37 H 0.119 0.881 38 H 0.173 0.827 39 H 0.231 0.769 40 H 0.109 0.891 41 H 0.127 0.873 42 H 0.118 0.882 43 H 0.105 0.895 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 14.892 0.069 -16.318 22.092 hybrid contribution 0.355 0.276 2.078 2.126 sum 15.247 0.345 -14.240 20.866 Atomic orbital electron populations 1.21579 0.95113 1.01109 1.00485 1.21632 0.96534 0.99430 0.95547 0.92895 1.19935 0.97354 0.94435 0.93066 1.21318 1.31244 1.09637 0.91085 0.95469 1.25697 0.96753 0.99898 0.95711 1.70067 1.49214 1.42220 0.98284 0.85917 0.79571 0.80925 0.77696 1.20364 1.21642 1.17037 1.22418 0.87469 1.00974 0.96650 1.65152 1.07568 1.02015 1.47423 1.23291 0.95646 0.96034 0.96323 1.22408 0.98895 0.94894 0.99439 1.20430 0.97049 0.91421 0.92787 0.85667 1.23298 0.87673 0.99369 0.96288 1.70324 1.30614 1.18696 1.04291 1.22522 0.96180 1.01858 1.01657 1.23074 1.03464 1.03810 0.86840 1.45607 1.20388 1.33255 1.14840 1.22413 0.92704 1.05309 0.87368 1.23526 0.93589 0.93599 0.99472 0.95284 0.91322 0.93240 0.93999 0.97877 0.93277 0.90778 0.88945 0.93784 0.88299 0.94326 0.88136 0.82717 0.76939 0.89135 0.87274 0.88155 0.89477 0.92190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.80 8.88 71.98 0.64 -4.16 16 2 C -0.11 -4.53 1.84 -10.80 -0.02 -4.55 16 3 H 0.05 2.33 6.04 -2.39 -0.01 2.31 16 4 C -0.01 -0.54 1.52 29.85 0.05 -0.50 16 5 C -0.49 -30.24 9.00 25.60 0.23 -30.01 16 6 H 0.03 1.84 7.13 -2.91 -0.02 1.82 16 7 C 0.01 0.94 5.47 84.65 0.46 1.40 16 8 N -0.96 -64.35 13.96 21.45 0.30 -64.05 16 9 Si 0.93 49.38 27.47 68.60 1.88 51.27 16 10 H -0.28 -14.86 7.11 99.48 0.71 -14.16 16 11 H -0.29 -15.03 7.11 99.48 0.71 -14.32 16 12 H -0.25 -11.99 6.54 99.48 0.65 -11.34 16 13 C 0.05 1.68 5.34 86.30 0.46 2.14 16 14 N -0.50 -15.25 5.54 -883.01 -4.89 -20.13 16 15 C 0.01 0.47 5.67 86.45 0.49 0.96 16 16 C -0.12 -3.61 5.97 31.47 0.19 -3.42 16 17 C 0.00 0.11 3.40 -10.33 -0.04 0.07 16 18 H 0.13 2.55 6.85 -2.39 -0.02 2.53 16 19 C 0.20 6.59 6.46 138.13 0.89 7.48 16 20 N -0.52 -22.80 10.87 -188.14 -2.05 -24.85 16 21 C -0.07 -2.79 11.87 83.52 0.99 -1.80 16 22 C -0.04 -1.00 11.58 83.08 0.96 -0.04 16 23 N -0.46 -11.37 3.15 -537.60 -1.69 -13.07 16 24 C 0.06 0.76 10.83 127.77 1.38 2.14 16 25 C 0.03 0.88 4.94 86.65 0.43 1.31 16 26 H 0.03 1.28 6.94 -2.38 -0.02 1.27 16 27 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.04 2.06 3.06 -2.39 -0.01 2.05 16 30 H 0.00 0.15 6.84 -2.39 -0.02 0.14 16 31 H 0.26 16.46 8.31 -92.71 -0.77 15.69 16 32 H 0.07 2.24 7.88 -2.39 -0.02 2.22 16 33 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 34 H 0.04 1.68 4.55 -2.38 -0.01 1.67 16 35 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 36 H 0.04 1.52 7.46 -2.39 -0.02 1.50 16 37 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 38 H 0.16 5.74 8.06 -2.91 -0.02 5.72 16 39 H 0.21 3.49 8.06 -2.91 -0.02 3.46 16 40 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.11 0.78 8.14 -2.38 -0.02 0.76 16 42 H 0.10 0.94 7.11 -2.39 -0.02 0.93 16 43 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 44 H 0.06 2.57 3.89 -2.39 -0.01 2.56 16 Total: -1.00 -82.06 331.81 1.60 -80.45 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: 0.93 Total: 19.36 kcal Atomic # 6 Polarization: -36.10 SS G_CDS: 7.12 Total: -28.98 kcal Atomic # 7 Polarization: -113.77 SS G_CDS: -8.33 Total: -122.10 kcal Atomic # 14 Polarization: 49.38 SS G_CDS: 1.88 Total: 51.27 kcal Total: -82.06 1.60 -80.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602667512.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.016 kcal (2) G-P(sol) polarization free energy of solvation -82.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds