Wall clock time and date at job start Mon Mar 30 2020 02:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 5 5 C 1.50697 * 109.47463 * 295.00146 * 4 2 1 6 6 H 1.08007 * 119.99713 * 0.02562 * 5 4 2 7 7 C 1.37879 * 120.00558 * 179.97438 * 5 4 2 8 8 N 1.31509 * 119.99821 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00224 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47047 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47062 * 119.99736 * 9 7 5 12 12 H 1.48495 * 109.47299 * 240.00155 * 9 7 5 13 13 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 14 14 N 1.46900 * 109.47303 * 64.99966 * 13 2 1 15 15 C 1.46891 * 110.99776 * 180.02562 * 14 13 2 16 16 C 1.50705 * 109.47163 * 180.02562 * 15 14 13 17 17 C 1.35322 * 126.12303 * 269.71283 * 16 15 14 18 18 C 1.50695 * 126.04125 * 0.03414 * 17 16 15 19 19 C 1.53003 * 117.50001 * 188.62310 * 18 17 16 20 20 C 1.52995 * 117.50159 * 120.00012 * 18 17 16 21 21 C 1.39870 * 107.91426 * 179.89891 * 17 16 15 22 22 N 1.30836 * 108.20798 * 0.36287 * 21 17 16 23 23 N 1.34944 * 126.12861 * 90.01786 * 16 15 14 24 24 C 1.46502 * 126.03928 * 359.94527 * 23 16 15 25 25 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 28 28 H 1.09002 * 109.46906 * 55.00224 * 4 2 1 29 29 H 1.09006 * 109.47717 * 174.99599 * 4 2 1 30 30 H 0.97002 * 120.00259 * 179.97438 * 8 7 5 31 31 H 1.09007 * 109.47135 * 184.99942 * 13 2 1 32 32 H 1.08996 * 109.46945 * 304.99450 * 13 2 1 33 33 H 1.00905 * 110.99744 * 303.95216 * 14 13 2 34 34 H 1.09008 * 109.47286 * 299.99177 * 15 14 13 35 35 H 1.09001 * 109.47709 * 59.99584 * 15 14 13 36 36 H 1.09002 * 115.54775 * 334.32533 * 18 17 16 37 37 H 1.09005 * 117.49360 * 359.97438 * 19 18 17 38 38 H 1.08994 * 117.50167 * 145.01245 * 19 18 17 39 39 H 1.09009 * 117.49819 * 214.97827 * 20 18 17 40 40 H 1.09001 * 117.49759 * 359.97438 * 20 18 17 41 41 H 1.08005 * 125.89506 * 180.14098 * 21 17 16 42 42 H 1.08999 * 109.47072 * 89.99907 * 24 23 16 43 43 H 1.09001 * 109.47040 * 209.99816 * 24 23 16 44 44 H 1.08999 * 109.47128 * 330.00271 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2491 5 6 1.6414 0.0569 2.4765 6 1 1.0800 0.9741 2.3757 7 6 1.9925 -0.4024 3.7283 8 7 2.6757 -1.5193 3.8511 9 14 1.4989 0.5627 5.2497 10 1 0.7424 1.7743 4.8435 11 1 0.6442 -0.2859 6.1184 12 1 2.7172 0.9665 5.9965 13 6 2.0400 -0.7212 -1.2494 14 7 1.6514 0.0376 -2.4457 15 6 2.1248 -0.6269 -3.6672 16 6 1.7088 0.1789 -4.8709 17 6 0.5567 0.0374 -5.5664 18 6 -0.5394 -0.9546 -5.2738 19 6 -1.6657 -1.0862 -6.3010 20 6 -1.9298 -0.3989 -4.9598 21 6 0.5616 0.9766 -6.6028 22 7 1.6800 1.6523 -6.5369 23 7 2.4211 1.1670 -5.4517 24 6 3.7369 1.6478 -5.0227 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 1.6055 -1.7198 1.2950 29 1 3.1264 -0.7995 1.2055 30 1 2.9230 -1.8423 4.7317 31 1 3.1264 -0.7994 -1.2057 32 1 1.6055 -1.7197 -1.2953 33 1 0.6528 0.1794 -2.4754 34 1 3.2117 -0.7048 -3.6406 35 1 1.6905 -1.6247 -3.7298 36 1 -0.2282 -1.8579 -4.7492 37 1 -1.6141 -0.4549 -7.1881 38 1 -2.0956 -2.0763 -6.4524 39 1 -2.5336 -0.9368 -4.2288 40 1 -2.0517 0.6843 -4.9644 41 1 -0.2210 1.1171 -7.3338 42 1 4.5151 1.0794 -5.5319 43 1 3.8366 2.7042 -5.2719 44 1 3.8378 1.5174 -3.9453 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602712435.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:53 Heat of formation + Delta-G solvation = 83.384195 kcal Electronic energy + Delta-G solvation = -21328.487845 eV Core-core repulsion = 18282.611159 eV Total energy + Delta-G solvation = -3045.876686 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.45139 -37.16584 -37.05655 -34.30686 -32.99408 -32.11271 -30.26020 -27.08693 -26.81550 -26.14406 -24.33469 -23.00084 -22.41750 -22.15204 -20.39443 -19.44607 -18.89079 -16.91526 -16.29190 -15.97621 -15.56400 -15.17514 -14.66112 -14.36464 -14.24959 -14.08849 -13.82876 -13.46702 -12.85178 -12.73977 -12.47123 -12.30687 -12.05344 -11.76107 -11.71728 -11.61535 -11.38245 -10.92725 -10.89170 -10.77930 -10.63558 -10.41666 -10.34250 -10.24795 -9.76085 -9.40897 -9.16876 -8.97930 -8.35342 -8.33302 -8.16488 -5.99522 -4.00557 1.75689 2.46509 2.60226 3.31056 3.38885 3.42933 3.89450 4.32107 4.40104 4.48297 4.65536 4.81175 4.83161 4.96716 5.05314 5.09702 5.20546 5.22147 5.36583 5.37382 5.49247 5.53714 5.66808 5.70358 5.74794 5.79909 6.01231 6.02425 6.07680 6.15776 6.20947 6.42313 6.52100 6.56336 6.85241 6.94882 7.08620 7.13482 7.24817 7.53083 7.65864 7.67528 7.82927 8.00629 8.44478 9.05988 9.63126 11.12013 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.023379 B = 0.003375 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.367080 B = 8295.021467 C = 8943.898760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.083 4.083 3 H 0.065 0.935 4 C 0.028 3.972 5 C -0.512 4.512 6 H 0.057 0.943 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.064 3.936 14 N -0.685 5.685 15 C 0.117 3.883 16 C 0.105 3.895 17 C -0.207 4.207 18 C -0.073 4.073 19 C -0.177 4.177 20 C -0.174 4.174 21 C 0.050 3.950 22 N -0.299 5.299 23 N -0.360 5.360 24 C 0.099 3.901 25 H 0.063 0.937 26 H 0.041 0.959 27 H 0.032 0.968 28 H 0.015 0.985 29 H 0.015 0.985 30 H 0.259 0.741 31 H 0.068 0.932 32 H 0.027 0.973 33 H 0.345 0.655 34 H 0.081 0.919 35 H 0.055 0.945 36 H 0.106 0.894 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.178 0.822 42 H 0.071 0.929 43 H 0.087 0.913 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.675 1.264 -20.404 20.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.102 4.102 3 H 0.083 0.917 4 C -0.010 4.010 5 C -0.551 4.551 6 H 0.075 0.925 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.717 3.283 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.064 4.064 14 N -0.318 5.318 15 C -0.013 4.013 16 C -0.023 4.023 17 C -0.219 4.219 18 C -0.092 4.092 19 C -0.214 4.214 20 C -0.211 4.211 21 C -0.135 4.135 22 N -0.120 5.120 23 N -0.142 5.142 24 C -0.042 4.042 25 H 0.082 0.918 26 H 0.060 0.940 27 H 0.051 0.949 28 H 0.033 0.967 29 H 0.033 0.967 30 H 0.069 0.931 31 H 0.086 0.914 32 H 0.045 0.955 33 H 0.165 0.835 34 H 0.099 0.901 35 H 0.073 0.927 36 H 0.124 0.876 37 H 0.111 0.889 38 H 0.112 0.888 39 H 0.113 0.887 40 H 0.112 0.888 41 H 0.194 0.806 42 H 0.089 0.911 43 H 0.106 0.894 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.178 2.578 -20.719 20.992 hybrid contribution -1.247 -0.917 1.205 1.962 sum -3.424 1.661 -19.514 19.881 Atomic orbital electron populations 1.21741 0.96579 1.00494 1.00346 1.21215 0.94974 1.00042 0.93978 0.91682 1.19113 0.96109 0.95395 0.90339 1.21271 1.34560 1.08277 0.90957 0.92514 1.25017 0.95330 0.95083 0.99113 1.69970 1.39141 1.21260 1.23290 0.86580 0.78269 0.80148 0.83286 1.19739 1.21106 1.21083 1.22184 1.00399 0.94610 0.89213 1.60636 1.20567 1.50053 1.00502 1.20468 1.00913 0.93959 0.85985 1.20690 0.92795 0.92519 0.96323 1.19004 0.97273 1.04559 1.01100 1.20155 0.87282 0.98260 1.03497 1.22941 1.02752 1.02168 0.93543 1.23021 0.98494 1.00792 0.98806 1.23582 0.96212 0.94822 0.98933 1.77334 1.06027 1.22617 1.06044 1.48319 1.16266 1.27032 1.22572 1.21906 0.79352 1.01258 1.01680 0.91846 0.93954 0.94926 0.96703 0.96674 0.93147 0.91353 0.95468 0.83504 0.90076 0.92696 0.87637 0.88890 0.88800 0.88670 0.88751 0.80550 0.91052 0.89433 0.88450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.44 8.77 37.16 0.33 -2.12 16 2 C -0.08 -1.64 2.54 -90.62 -0.23 -1.87 16 3 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 4 C 0.03 0.70 4.45 -27.89 -0.12 0.57 16 5 C -0.51 -14.13 8.41 -34.44 -0.29 -14.42 16 6 H 0.06 1.54 7.06 -52.48 -0.37 1.16 16 7 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -26.66 13.29 55.43 0.74 -25.93 16 9 Si 0.89 21.52 29.54 -169.99 -5.02 16.49 16 10 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 13 C 0.06 1.04 5.14 -3.82 -0.02 1.02 16 14 N -0.68 -9.52 6.49 -115.05 -0.75 -10.27 16 15 C 0.12 1.39 5.49 -4.98 -0.03 1.36 16 16 C 0.11 1.31 6.44 -82.26 -0.53 0.78 16 17 C -0.21 -2.47 5.76 -105.05 -0.61 -3.07 16 18 C -0.07 -0.74 5.95 -91.78 -0.55 -1.28 16 19 C -0.18 -1.48 10.02 -26.73 -0.27 -1.75 16 20 C -0.17 -1.61 10.23 -26.73 -0.27 -1.89 16 21 C 0.05 0.59 11.35 -17.37 -0.20 0.40 16 22 N -0.30 -4.07 12.58 30.63 0.39 -3.69 16 23 N -0.36 -4.56 4.01 -63.88 -0.26 -4.81 16 24 C 0.10 0.94 11.09 59.85 0.66 1.61 16 25 H 0.06 1.26 6.95 -51.93 -0.36 0.90 16 26 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.03 0.51 6.68 -51.93 -0.35 0.16 16 28 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 31 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.35 4.85 6.98 -39.29 -0.27 4.58 16 34 H 0.08 0.90 7.72 -51.92 -0.40 0.50 16 35 H 0.06 0.62 7.32 -51.93 -0.38 0.24 16 36 H 0.11 1.06 7.41 -51.93 -0.38 0.67 16 37 H 0.09 0.71 6.98 -51.93 -0.36 0.34 16 38 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.09 0.83 8.14 -51.92 -0.42 0.41 16 40 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.18 1.60 7.20 -52.48 -0.38 1.22 16 42 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.10 0.92 7.66 -51.93 -0.40 0.52 16 LS Contribution 358.16 15.07 5.40 5.40 Total: -1.00 -30.99 358.16 -9.16 -40.16 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -7.44 Total: 1.82 kcal Atomic # 6 Polarization: -16.96 SS G_CDS: -2.22 Total: -19.18 kcal Atomic # 7 Polarization: -44.81 SS G_CDS: 0.12 Total: -44.69 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.99 -9.16 -40.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602712435.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.543 kcal (2) G-P(sol) polarization free energy of solvation -30.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds