Wall clock time and date at job start Mon Mar 30 2020 02:07:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47502 * 2 1 4 4 C 1.53002 * 109.47182 * 240.00334 * 2 1 3 5 5 N 1.46503 * 109.47069 * 64.99873 * 4 2 1 6 6 C 1.35312 * 125.86851 * 125.00004 * 5 4 2 7 7 C 1.35341 * 106.17598 * 180.02562 * 6 5 4 8 8 C 1.50700 * 126.75090 * 179.97438 * 7 6 5 9 9 C 1.50702 * 109.46869 * 125.00400 * 8 7 6 10 10 H 1.08002 * 120.00299 * 0.02562 * 9 8 7 11 11 C 1.37884 * 119.99942 * 179.72213 * 9 8 7 12 12 N 1.31514 * 119.99985 * 180.27663 * 11 9 8 13 13 Si 1.86800 * 119.99777 * 0.28166 * 11 9 8 14 14 H 1.48498 * 109.47109 * 89.99834 * 13 11 9 15 15 H 1.48507 * 109.46754 * 209.99574 * 13 11 9 16 16 H 1.48498 * 109.47278 * 329.99405 * 13 11 9 17 17 N 1.33772 * 106.49948 * 0.26771 * 7 6 5 18 18 N 1.28637 * 108.88114 * 359.55958 * 17 7 6 19 19 C 1.52998 * 109.47023 * 120.00465 * 2 1 3 20 20 C 1.52996 * 109.47309 * 299.99891 * 19 2 1 21 21 C 1.52996 * 109.47333 * 180.02562 * 20 19 2 22 22 C 1.52995 * 109.47509 * 59.99694 * 21 20 19 23 23 C 1.53002 * 109.47266 * 300.00247 * 22 21 20 24 24 C 1.52998 * 109.47034 * 59.99862 * 23 22 21 25 25 H 1.08993 * 109.46876 * 299.99623 * 1 2 3 26 26 H 1.08995 * 109.46926 * 59.99724 * 1 2 3 27 27 H 1.09002 * 109.47030 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46852 * 305.00236 * 4 2 1 29 29 H 1.08991 * 109.47483 * 185.00117 * 4 2 1 30 30 H 1.08001 * 126.90658 * 359.97438 * 6 5 4 31 31 H 1.09004 * 109.47210 * 5.00693 * 8 7 6 32 32 H 1.08994 * 109.47551 * 245.00345 * 8 7 6 33 33 H 0.96996 * 119.99730 * 180.02562 * 12 11 9 34 34 H 1.09003 * 109.47054 * 60.00107 * 19 2 1 35 35 H 1.09003 * 109.47239 * 300.00103 * 20 19 2 36 36 H 1.09001 * 109.47407 * 59.99961 * 20 19 2 37 37 H 1.09002 * 109.47219 * 299.99839 * 21 20 19 38 38 H 1.09007 * 109.47324 * 180.02562 * 21 20 19 39 39 H 1.09000 * 109.47416 * 180.02562 * 22 21 20 40 40 H 1.08998 * 109.47323 * 60.00349 * 22 21 20 41 41 H 1.08998 * 109.47032 * 300.00279 * 23 22 21 42 42 H 1.08994 * 109.47364 * 179.97438 * 23 22 21 43 43 H 1.09001 * 109.47556 * 180.02562 * 24 23 22 44 44 H 1.09002 * 109.47545 * 60.00045 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.6524 0.0355 -2.4424 6 6 2.4914 0.4801 -3.4065 7 6 1.7182 1.1242 -4.3115 8 6 2.1827 1.8002 -5.5757 9 6 1.4246 1.2409 -6.7520 10 1 0.6805 0.4731 -6.5994 11 6 1.6765 1.7140 -8.0225 12 7 1.0111 1.2298 -9.0483 13 14 2.9629 3.0424 -8.2864 14 1 4.2847 2.4103 -8.5283 15 1 2.5870 3.8689 -9.4616 16 1 3.0396 3.9041 -7.0795 17 7 0.4613 1.0483 -3.8598 18 7 0.4555 0.3921 -2.7534 19 6 2.0400 -0.7213 1.2492 20 6 1.5300 -0.0002 2.4985 21 6 2.0405 -0.7212 3.7476 22 6 3.5705 -0.7208 3.7474 23 6 4.0805 -1.4420 2.4981 24 6 3.5701 -0.7209 1.2489 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6054 -1.7197 -1.2953 29 1 3.1263 -0.7994 -1.2057 30 1 3.5626 0.3484 -3.4453 31 1 3.2492 1.6214 -5.7126 32 1 2.0005 2.8723 -5.5026 33 1 1.1885 1.5623 -9.9421 34 1 1.6766 -1.7490 1.2491 35 1 1.8934 1.0275 2.4986 36 1 0.4400 -0.0002 2.4985 37 1 1.6775 -1.7490 3.7478 38 1 1.6768 -0.2077 4.6377 39 1 3.9341 -1.2348 4.6371 40 1 3.9336 0.3069 3.7473 41 1 3.7174 -2.4697 2.4982 42 1 5.1704 -1.4413 2.4976 43 1 3.9330 -1.2349 0.3588 44 1 3.9331 0.3069 1.2487 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603240510.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:13 Heat of formation + Delta-G solvation = 64.201582 kcal Electronic energy + Delta-G solvation = -21480.378626 eV Core-core repulsion = 18433.670119 eV Total energy + Delta-G solvation = -3046.708506 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.58693 -39.50251 -35.96762 -33.57516 -32.60495 -31.32252 -31.13946 -29.41903 -27.87106 -27.12136 -23.62773 -23.07699 -22.74714 -21.33058 -20.61928 -20.11330 -19.71697 -17.04773 -16.66585 -15.84248 -15.62964 -15.16810 -14.51193 -14.35495 -14.20687 -13.99830 -13.82603 -13.45621 -13.20791 -12.95751 -12.70567 -12.28347 -12.24032 -12.03673 -11.71506 -11.55531 -11.51791 -11.44225 -11.04243 -10.89906 -10.74308 -10.58822 -10.47326 -10.25697 -10.21136 -10.05429 -9.79265 -9.32291 -9.28859 -8.51381 -8.21706 -5.97630 -3.95376 2.20894 2.79267 3.32985 3.41170 3.42651 3.45371 4.21020 4.27908 4.39514 4.48338 4.53291 4.62545 4.81589 4.92863 4.99386 5.03612 5.11931 5.18066 5.20545 5.22035 5.31067 5.35082 5.45026 5.50302 5.55372 5.64993 5.74418 5.76567 5.80251 5.83824 5.86678 5.91933 5.97879 6.02583 6.03687 6.18894 6.27857 6.46601 6.90216 7.13173 7.20432 7.25821 7.75873 8.60403 9.10724 9.29126 9.61585 11.15979 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.038370 B = 0.003138 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.570752 B = 8921.227990 C = 9303.449630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.095 4.095 3 H 0.076 0.924 4 C 0.120 3.880 5 N -0.300 5.300 6 C -0.082 4.082 7 C 0.038 3.962 8 C 0.060 3.940 9 C -0.505 4.505 10 H 0.076 0.924 11 C 0.067 3.933 12 N -0.901 5.901 13 Si 0.877 3.123 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.264 1.264 17 N -0.259 5.259 18 N -0.101 5.101 19 C -0.078 4.078 20 C -0.115 4.115 21 C -0.119 4.119 22 C -0.121 4.121 23 C -0.119 4.119 24 C -0.122 4.122 25 H 0.055 0.945 26 H 0.089 0.911 27 H 0.053 0.947 28 H 0.091 0.909 29 H 0.101 0.899 30 H 0.180 0.820 31 H 0.030 0.970 32 H 0.037 0.963 33 H 0.263 0.737 34 H 0.074 0.926 35 H 0.062 0.938 36 H 0.068 0.932 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.059 0.941 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.064 0.936 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.371 -5.080 26.852 28.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.115 4.115 3 H 0.095 0.905 4 C -0.001 4.001 5 N -0.095 5.095 6 C -0.231 4.231 7 C -0.100 4.100 8 C 0.021 3.979 9 C -0.544 4.544 10 H 0.094 0.906 11 C -0.134 4.134 12 N -0.540 5.540 13 Si 0.704 3.296 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.189 1.189 17 N -0.126 5.126 18 N -0.080 5.080 19 C -0.097 4.097 20 C -0.152 4.152 21 C -0.157 4.157 22 C -0.158 4.158 23 C -0.156 4.156 24 C -0.159 4.159 25 H 0.074 0.926 26 H 0.108 0.892 27 H 0.072 0.928 28 H 0.110 0.890 29 H 0.119 0.881 30 H 0.197 0.803 31 H 0.048 0.952 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.093 0.907 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.083 0.917 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.868 -5.106 27.078 28.173 hybrid contribution 1.925 0.478 -0.515 2.049 sum 7.793 -4.628 26.564 28.067 Atomic orbital electron populations 1.22145 0.93501 1.02552 1.03777 1.21439 0.97859 0.99898 0.92284 0.90526 1.22154 1.01400 0.95116 0.81454 1.47176 1.06213 1.38188 1.17904 1.23315 0.98843 1.07958 0.92956 1.22459 0.88850 1.00416 0.98237 1.18137 0.96208 0.95520 0.88076 1.20931 1.21804 1.22498 0.89159 0.90600 1.24983 0.96096 0.96394 0.95926 1.69905 1.41648 1.43318 0.99166 0.86826 0.82062 0.82596 0.78123 1.20253 1.21259 1.18895 1.75107 1.20821 1.13937 1.02689 1.78061 1.03035 1.14887 1.12015 1.21151 0.95124 0.99812 0.93595 1.21617 1.00791 0.99285 0.93512 1.21535 0.95593 1.00779 0.97791 1.21545 0.95812 1.00740 0.97710 1.21521 1.00154 0.99412 0.94556 1.21729 0.95148 1.01143 0.97924 0.92605 0.89203 0.92787 0.89041 0.88108 0.80254 0.95211 0.94517 0.92713 0.90725 0.91962 0.91347 0.92034 0.92131 0.92270 0.92068 0.91983 0.92067 0.91734 0.91709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.80 8.55 37.16 0.32 -1.48 16 2 C -0.10 -0.92 2.17 -90.62 -0.20 -1.11 16 3 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 4 C 0.12 1.29 5.72 -4.04 -0.02 1.26 16 5 N -0.30 -4.86 3.44 -61.26 -0.21 -5.07 16 6 C -0.08 -1.44 11.49 -17.05 -0.20 -1.64 16 7 C 0.04 0.86 6.44 -82.78 -0.53 0.32 16 8 C 0.06 1.47 4.62 -29.03 -0.13 1.33 16 9 C -0.51 -14.93 9.64 -34.44 -0.33 -15.26 16 10 H 0.08 2.51 7.98 -52.49 -0.42 2.09 16 11 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 12 N -0.90 -28.34 13.96 55.43 0.77 -27.57 16 13 Si 0.88 21.49 27.47 -169.99 -4.67 16.82 16 14 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 15 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 16 H -0.26 -6.17 6.54 56.52 0.37 -5.80 16 17 N -0.26 -6.16 12.40 33.29 0.41 -5.75 16 18 N -0.10 -2.02 10.24 60.35 0.62 -1.40 16 19 C -0.08 -0.57 1.78 -90.62 -0.16 -0.73 16 20 C -0.11 -0.81 4.85 -26.74 -0.13 -0.94 16 21 C -0.12 -0.74 5.92 -26.74 -0.16 -0.90 16 22 C -0.12 -0.73 5.92 -26.73 -0.16 -0.88 16 23 C -0.12 -0.72 5.92 -26.73 -0.16 -0.88 16 24 C -0.12 -0.81 4.86 -26.73 -0.13 -0.94 16 25 H 0.05 0.54 6.43 -51.93 -0.33 0.21 16 26 H 0.09 1.30 5.49 -51.93 -0.29 1.02 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.10 0.82 6.10 -51.93 -0.32 0.51 16 30 H 0.18 2.43 8.06 -52.49 -0.42 2.01 16 31 H 0.03 0.67 7.56 -51.93 -0.39 0.28 16 32 H 0.04 0.91 7.19 -51.93 -0.37 0.54 16 33 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.50 6.43 -51.93 -0.33 0.17 16 37 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.06 0.36 8.14 -51.92 -0.42 -0.07 16 39 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.06 0.40 6.32 -51.93 -0.33 0.07 16 44 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 339.18 15.07 5.11 5.11 Total: -1.00 -33.80 339.18 -7.50 -41.30 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: -7.45 Total: -3.48 kcal Atomic # 6 Polarization: -17.87 SS G_CDS: -2.09 Total: -19.96 kcal Atomic # 7 Polarization: -41.38 SS G_CDS: 1.59 Total: -39.79 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.67 Total: 16.82 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.80 -7.50 -41.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603240510.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.501 kcal (2) G-P(sol) polarization free energy of solvation -33.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds