Wall clock time and date at job start Mon Mar 30 2020 02:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47502 * 2 1 4 4 C 1.53002 * 109.47182 * 240.00334 * 2 1 3 5 5 N 1.46503 * 109.47069 * 64.99873 * 4 2 1 6 6 C 1.35312 * 125.86851 * 125.00004 * 5 4 2 7 7 C 1.35341 * 106.17598 * 180.02562 * 6 5 4 8 8 C 1.50700 * 126.75090 * 179.97438 * 7 6 5 9 9 C 1.50702 * 109.46869 * 125.00400 * 8 7 6 10 10 H 1.08002 * 120.00299 * 0.02562 * 9 8 7 11 11 C 1.37884 * 119.99942 * 179.72213 * 9 8 7 12 12 N 1.31514 * 119.99985 * 180.27663 * 11 9 8 13 13 Si 1.86800 * 119.99777 * 0.28166 * 11 9 8 14 14 H 1.48498 * 109.47109 * 89.99834 * 13 11 9 15 15 H 1.48507 * 109.46754 * 209.99574 * 13 11 9 16 16 H 1.48498 * 109.47278 * 329.99405 * 13 11 9 17 17 N 1.33772 * 106.49948 * 0.26771 * 7 6 5 18 18 N 1.28637 * 108.88114 * 359.55958 * 17 7 6 19 19 C 1.52998 * 109.47023 * 120.00465 * 2 1 3 20 20 C 1.52996 * 109.47309 * 299.99891 * 19 2 1 21 21 C 1.52996 * 109.47333 * 180.02562 * 20 19 2 22 22 C 1.52995 * 109.47509 * 59.99694 * 21 20 19 23 23 C 1.53002 * 109.47266 * 300.00247 * 22 21 20 24 24 C 1.52998 * 109.47034 * 59.99862 * 23 22 21 25 25 H 1.08993 * 109.46876 * 299.99623 * 1 2 3 26 26 H 1.08995 * 109.46926 * 59.99724 * 1 2 3 27 27 H 1.09002 * 109.47030 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46852 * 305.00236 * 4 2 1 29 29 H 1.08991 * 109.47483 * 185.00117 * 4 2 1 30 30 H 1.08001 * 126.90658 * 359.97438 * 6 5 4 31 31 H 1.09004 * 109.47210 * 5.00693 * 8 7 6 32 32 H 1.08994 * 109.47551 * 245.00345 * 8 7 6 33 33 H 0.96996 * 119.99730 * 180.02562 * 12 11 9 34 34 H 1.09003 * 109.47054 * 60.00107 * 19 2 1 35 35 H 1.09003 * 109.47239 * 300.00103 * 20 19 2 36 36 H 1.09001 * 109.47407 * 59.99961 * 20 19 2 37 37 H 1.09002 * 109.47219 * 299.99839 * 21 20 19 38 38 H 1.09007 * 109.47324 * 180.02562 * 21 20 19 39 39 H 1.09000 * 109.47416 * 180.02562 * 22 21 20 40 40 H 1.08998 * 109.47323 * 60.00349 * 22 21 20 41 41 H 1.08998 * 109.47032 * 300.00279 * 23 22 21 42 42 H 1.08994 * 109.47364 * 179.97438 * 23 22 21 43 43 H 1.09001 * 109.47556 * 180.02562 * 24 23 22 44 44 H 1.09002 * 109.47545 * 60.00045 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.6524 0.0355 -2.4424 6 6 2.4914 0.4801 -3.4065 7 6 1.7182 1.1242 -4.3115 8 6 2.1827 1.8002 -5.5757 9 6 1.4246 1.2409 -6.7520 10 1 0.6805 0.4731 -6.5994 11 6 1.6765 1.7140 -8.0225 12 7 1.0111 1.2298 -9.0483 13 14 2.9629 3.0424 -8.2864 14 1 4.2847 2.4103 -8.5283 15 1 2.5870 3.8689 -9.4616 16 1 3.0396 3.9041 -7.0795 17 7 0.4613 1.0483 -3.8598 18 7 0.4555 0.3921 -2.7534 19 6 2.0400 -0.7213 1.2492 20 6 1.5300 -0.0002 2.4985 21 6 2.0405 -0.7212 3.7476 22 6 3.5705 -0.7208 3.7474 23 6 4.0805 -1.4420 2.4981 24 6 3.5701 -0.7209 1.2489 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6054 -1.7197 -1.2953 29 1 3.1263 -0.7994 -1.2057 30 1 3.5626 0.3484 -3.4453 31 1 3.2492 1.6214 -5.7126 32 1 2.0005 2.8723 -5.5026 33 1 1.1885 1.5623 -9.9421 34 1 1.6766 -1.7490 1.2491 35 1 1.8934 1.0275 2.4986 36 1 0.4400 -0.0002 2.4985 37 1 1.6775 -1.7490 3.7478 38 1 1.6768 -0.2077 4.6377 39 1 3.9341 -1.2348 4.6371 40 1 3.9336 0.3069 3.7473 41 1 3.7174 -2.4697 2.4982 42 1 5.1704 -1.4413 2.4976 43 1 3.9330 -1.2349 0.3588 44 1 3.9331 0.3069 1.2487 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603240510.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:12 Heat of formation + Delta-G solvation = 43.371167 kcal Electronic energy + Delta-G solvation = -21481.281900 eV Core-core repulsion = 18433.670119 eV Total energy + Delta-G solvation = -3047.611781 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.05079 -40.12779 -36.91039 -35.39890 -33.98175 -33.08438 -31.72201 -30.33854 -29.48608 -28.16660 -25.05830 -24.41608 -23.32576 -22.58286 -21.82922 -20.86669 -20.65108 -18.90555 -18.17269 -17.13983 -16.45231 -16.18827 -15.90772 -15.51789 -15.10715 -14.97598 -14.78059 -14.55696 -14.26110 -14.09698 -14.02072 -13.70000 -13.31989 -13.03047 -12.86961 -12.50920 -12.41355 -12.27883 -12.20640 -11.99198 -11.93417 -11.77461 -11.66210 -11.58954 -11.40300 -11.27354 -10.97256 -10.76963 -10.73595 -10.61427 -9.82630 -8.23639 -6.28834 0.80781 1.41191 1.45908 1.57429 1.62729 1.79059 2.41781 3.10493 3.44671 3.59521 3.74577 3.75721 3.91932 4.01868 4.18056 4.25715 4.32300 4.40559 4.45120 4.45639 4.57017 4.58137 4.68730 4.71870 4.75783 4.79967 4.84988 4.97938 5.03236 5.09452 5.16535 5.21491 5.30776 5.31069 5.33775 5.36701 5.38581 5.42403 5.48358 5.57588 5.64678 5.65301 5.95074 6.33502 6.76469 7.32844 7.75844 8.94326 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.038370 B = 0.003138 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.570752 B = 8921.227990 C = 9303.449630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.086 4.086 3 H 0.066 0.934 4 C 0.108 3.892 5 N -0.283 5.283 6 C -0.052 4.052 7 C -0.010 4.010 8 C 0.067 3.933 9 C -0.518 4.518 10 H 0.017 0.983 11 C 0.000 4.000 12 N -0.956 5.956 13 Si 0.960 3.040 14 H -0.255 1.255 15 H -0.287 1.287 16 H -0.242 1.242 17 N -0.318 5.318 18 N -0.111 5.111 19 C -0.068 4.068 20 C -0.115 4.115 21 C -0.118 4.118 22 C -0.121 4.121 23 C -0.118 4.118 24 C -0.122 4.122 25 H 0.065 0.935 26 H 0.054 0.946 27 H 0.058 0.942 28 H 0.105 0.895 29 H 0.138 0.862 30 H 0.230 0.770 31 H 0.060 0.940 32 H 0.033 0.967 33 H 0.267 0.733 34 H 0.082 0.918 35 H 0.056 0.944 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.065 0.935 40 H 0.057 0.943 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.075 0.925 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.657 -5.143 28.999 31.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.106 4.106 3 H 0.085 0.915 4 C -0.011 4.011 5 N -0.078 5.078 6 C -0.202 4.202 7 C -0.148 4.148 8 C 0.028 3.972 9 C -0.556 4.556 10 H 0.035 0.965 11 C -0.195 4.195 12 N -0.597 5.597 13 Si 0.782 3.218 14 H -0.179 1.179 15 H -0.213 1.213 16 H -0.166 1.166 17 N -0.184 5.184 18 N -0.090 5.090 19 C -0.087 4.087 20 C -0.153 4.153 21 C -0.155 4.155 22 C -0.159 4.159 23 C -0.155 4.155 24 C -0.159 4.159 25 H 0.084 0.916 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.123 0.877 29 H 0.156 0.844 30 H 0.246 0.754 31 H 0.078 0.922 32 H 0.051 0.949 33 H 0.075 0.925 34 H 0.100 0.900 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.076 0.924 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.093 0.907 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 9.138 -5.191 29.282 31.110 hybrid contribution 0.812 0.371 -1.051 1.379 sum 9.951 -4.820 28.231 30.319 Atomic orbital electron populations 1.22103 0.94896 1.02463 1.02463 1.21365 0.96566 0.99628 0.92993 0.91541 1.22751 1.03881 0.94999 0.79516 1.47637 1.05013 1.36552 1.18572 1.23830 1.00483 1.04798 0.91116 1.22392 0.89648 1.03442 0.99338 1.17960 0.96941 0.95125 0.87176 1.21143 1.21215 1.21511 0.91741 0.96503 1.26104 0.98929 0.99360 0.95152 1.70094 1.44118 1.45520 0.99959 0.85521 0.78867 0.78810 0.78583 1.17911 1.21347 1.16561 1.75028 1.22559 1.16242 1.04566 1.78017 1.04754 1.15146 1.11043 1.21075 0.95824 0.99685 0.92107 1.21610 1.00538 0.99121 0.93992 1.21520 0.95869 1.00787 0.97338 1.21553 0.95489 1.00670 0.98155 1.21517 1.00503 0.99426 0.94089 1.21737 0.94197 1.01217 0.98752 0.91609 0.92760 0.92267 0.87692 0.84391 0.75368 0.92213 0.94937 0.92454 0.90003 0.92558 0.91809 0.91752 0.91921 0.91674 0.92435 0.91642 0.91518 0.90659 0.92074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.46 8.55 71.98 0.62 -2.85 16 2 C -0.09 -1.47 2.17 -10.79 -0.02 -1.50 16 3 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 4 C 0.11 1.96 5.72 86.38 0.49 2.45 16 5 N -0.28 -8.65 3.44 -347.73 -1.20 -9.84 16 6 C -0.05 -1.70 11.49 83.49 0.96 -0.74 16 7 C -0.01 -0.43 6.44 41.59 0.27 -0.17 16 8 C 0.07 3.27 4.62 29.10 0.13 3.40 16 9 C -0.52 -31.65 9.64 25.60 0.25 -31.41 16 10 H 0.02 1.18 7.98 -2.91 -0.02 1.15 16 11 C 0.00 0.03 5.47 84.66 0.46 0.49 16 12 N -0.96 -62.27 13.96 21.45 0.30 -61.97 16 13 Si 0.96 44.04 27.47 68.60 1.88 45.92 16 14 H -0.25 -10.76 7.11 99.48 0.71 -10.05 16 15 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 16 H -0.24 -10.18 6.54 99.48 0.65 -9.53 16 17 N -0.32 -15.66 12.40 -48.60 -0.60 -16.26 16 18 N -0.11 -4.47 10.24 37.02 0.38 -4.10 16 19 C -0.07 -0.80 1.78 -10.79 -0.02 -0.82 16 20 C -0.12 -1.41 4.85 30.59 0.15 -1.26 16 21 C -0.12 -1.21 5.92 30.59 0.18 -1.03 16 22 C -0.12 -1.16 5.92 30.59 0.18 -0.98 16 23 C -0.12 -1.06 5.92 30.59 0.18 -0.88 16 24 C -0.12 -1.19 4.86 30.60 0.15 -1.04 16 25 H 0.07 1.24 6.43 -2.39 -0.02 1.22 16 26 H 0.05 1.59 5.49 -2.39 -0.01 1.58 16 27 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.10 1.73 8.14 -2.38 -0.02 1.71 16 29 H 0.14 1.55 6.10 -2.39 -0.01 1.53 16 30 H 0.23 4.96 8.06 -2.91 -0.02 4.93 16 31 H 0.06 2.53 7.56 -2.38 -0.02 2.51 16 32 H 0.03 1.59 7.19 -2.39 -0.02 1.57 16 33 H 0.27 16.04 8.31 -92.71 -0.77 15.27 16 34 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.06 0.84 6.43 -2.39 -0.02 0.82 16 37 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 39 H 0.06 0.55 8.14 -2.39 -0.02 0.54 16 40 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 41 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 42 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 43 H 0.07 0.58 6.32 -2.39 -0.02 0.57 16 44 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 Total: -1.00 -79.21 339.18 5.65 -73.56 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: 0.91 Total: 9.00 kcal Atomic # 6 Polarization: -40.30 SS G_CDS: 3.98 Total: -36.32 kcal Atomic # 7 Polarization: -91.05 SS G_CDS: -1.12 Total: -92.17 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 1.88 Total: 45.92 kcal Total: -79.21 5.65 -73.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603240510.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.934 kcal (2) G-P(sol) polarization free energy of solvation -79.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds