Wall clock time and date at job start Mon Mar 30 2020 02:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47271 * 2 1 4 4 C 1.52998 * 109.47447 * 120.00190 * 2 1 3 5 5 N 1.46505 * 109.46658 * 295.00226 * 4 2 1 6 6 C 1.35310 * 125.86763 * 125.29510 * 5 4 2 7 7 C 1.35348 * 106.17503 * 180.17814 * 6 5 4 8 8 C 1.50700 * 126.75241 * 179.84708 * 7 6 5 9 9 C 1.50702 * 109.46869 * 124.71667 * 8 7 6 10 10 H 1.08002 * 120.00299 * 0.02562 * 9 8 7 11 11 C 1.37884 * 119.99942 * 179.72213 * 9 8 7 12 12 N 1.31514 * 119.99698 * 0.28408 * 11 9 8 13 13 Si 1.86794 * 119.99837 * 180.27476 * 11 9 8 14 14 H 1.48501 * 109.47188 * 90.00793 * 13 11 9 15 15 H 1.48501 * 109.47085 * 210.00372 * 13 11 9 16 16 H 1.48498 * 109.47634 * 330.00608 * 13 11 9 17 17 N 1.33770 * 106.49624 * 359.59617 * 7 6 5 18 18 N 1.28632 * 108.88455 * 0.25241 * 17 7 6 19 19 C 1.53001 * 109.47335 * 240.00192 * 2 1 3 20 20 C 1.52998 * 109.47335 * 179.97438 * 19 2 1 21 21 C 1.53005 * 109.46830 * 179.97438 * 20 19 2 22 22 C 1.52999 * 109.47244 * 60.00162 * 21 20 19 23 23 C 1.52998 * 109.47074 * 299.99688 * 22 21 20 24 24 C 1.52997 * 109.47017 * 60.00178 * 23 22 21 25 25 H 1.09000 * 109.46744 * 299.99814 * 1 2 3 26 26 H 1.09004 * 109.47269 * 59.99877 * 1 2 3 27 27 H 1.08997 * 109.46855 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47517 * 175.00160 * 4 2 1 29 29 H 1.08999 * 109.47139 * 54.99813 * 4 2 1 30 30 H 1.08000 * 126.91429 * 0.03609 * 6 5 4 31 31 H 1.09004 * 109.47210 * 4.71960 * 8 7 6 32 32 H 1.08994 * 109.47551 * 244.71612 * 8 7 6 33 33 H 0.97005 * 119.99651 * 179.97438 * 12 11 9 34 34 H 1.09002 * 109.46784 * 300.00106 * 19 2 1 35 35 H 1.09002 * 109.47271 * 299.99808 * 20 19 2 36 36 H 1.08990 * 109.47252 * 59.99880 * 20 19 2 37 37 H 1.08997 * 109.47374 * 299.99649 * 21 20 19 38 38 H 1.09003 * 109.46450 * 180.02562 * 21 20 19 39 39 H 1.09004 * 109.47235 * 179.97438 * 22 21 20 40 40 H 1.09002 * 109.47259 * 59.99926 * 22 21 20 41 41 H 1.09002 * 109.47271 * 300.00230 * 23 22 21 42 42 H 1.09004 * 109.47269 * 180.02562 * 23 22 21 43 43 H 1.09001 * 109.47127 * 180.02562 * 24 23 22 44 44 H 1.08997 * 109.47379 * 60.00234 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 1.6524 0.0354 2.4423 6 6 0.9612 -0.4504 3.4993 7 6 0.8208 0.5811 4.3642 8 6 0.1186 0.5509 5.6973 9 6 1.0628 1.0224 6.7731 10 1 2.0704 1.3151 6.5171 11 6 0.6383 1.0861 8.0835 12 7 -0.5887 0.7300 8.3952 13 14 1.8063 1.6778 9.4158 14 1 1.6822 3.1501 9.5647 15 1 1.4638 1.0196 10.7022 16 1 3.2011 1.3341 9.0398 17 7 1.4328 1.6313 3.8056 18 7 1.9152 1.2751 2.6676 19 6 2.0400 -0.7212 -1.2493 20 6 3.5700 -0.7206 -1.2496 21 6 4.0800 -1.4424 -2.4986 22 6 3.5695 -0.7221 -3.7481 23 6 2.0395 -0.7226 -3.7478 24 6 1.5295 -0.0009 -2.4989 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1264 -0.7995 1.2055 29 1 1.6055 -1.7198 1.2951 30 1 0.5934 -1.4579 3.6261 31 1 -0.2019 -0.4677 5.9161 32 1 -0.7514 1.2065 5.6647 33 1 -0.8872 0.7745 9.3171 34 1 1.6767 -1.7489 -1.2493 35 1 3.9330 0.3072 -1.2498 36 1 3.9337 -1.2342 -0.3597 37 1 3.7171 -2.4702 -2.4979 38 1 5.1700 -1.4424 -2.4985 39 1 3.9331 -1.2360 -4.6379 40 1 3.9325 0.3057 -3.7488 41 1 1.6765 -1.7504 -3.7471 42 1 1.6757 -0.2098 -4.6382 43 1 0.4395 -0.0016 -2.4984 44 1 1.8924 1.0269 -2.4995 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603240511.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:15 Heat of formation + Delta-G solvation = 36.501632 kcal Electronic energy + Delta-G solvation = -21427.762629 eV Core-core repulsion = 18379.852963 eV Total energy + Delta-G solvation = -3047.909666 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -44.02568 -40.13226 -36.89511 -35.48104 -33.96485 -32.81152 -31.73808 -30.09208 -29.39191 -28.06654 -25.46326 -24.47678 -23.31359 -22.58944 -22.02909 -20.70909 -20.51419 -18.54674 -18.03966 -17.37014 -16.58774 -16.28194 -15.75756 -15.54796 -15.04998 -14.86899 -14.69674 -14.41071 -14.25866 -14.23271 -13.83954 -13.67322 -13.32237 -12.93621 -12.74021 -12.64715 -12.52917 -12.39680 -12.36905 -12.06644 -11.94966 -11.88496 -11.67849 -11.61964 -11.33881 -11.28081 -11.06174 -10.83034 -10.59538 -10.53236 -9.81987 -8.18718 -6.27303 0.81694 1.39880 1.42255 1.52641 1.64332 1.80388 2.44584 3.13932 3.45310 3.62660 3.64502 3.82909 3.88135 4.08024 4.17073 4.23943 4.33475 4.40098 4.43803 4.50758 4.52554 4.61012 4.68431 4.69837 4.72639 4.76210 4.88360 4.91425 5.03241 5.13850 5.16788 5.27269 5.31106 5.31380 5.33898 5.37487 5.44448 5.48079 5.51952 5.55951 5.65477 5.77131 5.90777 6.23279 6.81015 7.39242 7.76587 8.92278 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.044899 B = 0.002985 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.478905 B = 9376.885070 C = 9673.407479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.090 4.090 3 H 0.064 0.936 4 C 0.107 3.893 5 N -0.277 5.277 6 C -0.054 4.054 7 C -0.009 4.009 8 C 0.103 3.897 9 C -0.523 4.523 10 H 0.043 0.957 11 C 0.008 3.992 12 N -0.927 5.927 13 Si 0.962 3.038 14 H -0.276 1.276 15 H -0.273 1.273 16 H -0.271 1.271 17 N -0.313 5.313 18 N -0.118 5.118 19 C -0.066 4.066 20 C -0.123 4.123 21 C -0.117 4.117 22 C -0.122 4.122 23 C -0.116 4.116 24 C -0.116 4.116 25 H 0.020 0.980 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.109 0.891 29 H 0.135 0.865 30 H 0.221 0.779 31 H 0.033 0.967 32 H 0.006 0.994 33 H 0.266 0.734 34 H 0.091 0.909 35 H 0.052 0.948 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.062 0.938 39 H 0.066 0.934 40 H 0.053 0.947 41 H 0.069 0.931 42 H 0.063 0.937 43 H 0.068 0.932 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.894 -9.807 -26.171 28.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.110 4.110 3 H 0.082 0.918 4 C -0.012 4.012 5 N -0.073 5.073 6 C -0.205 4.205 7 C -0.148 4.148 8 C 0.064 3.936 9 C -0.562 4.562 10 H 0.062 0.938 11 C -0.190 4.190 12 N -0.568 5.568 13 Si 0.787 3.213 14 H -0.202 1.202 15 H -0.198 1.198 16 H -0.196 1.196 17 N -0.179 5.179 18 N -0.097 5.097 19 C -0.085 4.085 20 C -0.160 4.160 21 C -0.154 4.154 22 C -0.159 4.159 23 C -0.154 4.154 24 C -0.153 4.153 25 H 0.039 0.961 26 H 0.090 0.910 27 H 0.095 0.905 28 H 0.127 0.873 29 H 0.153 0.847 30 H 0.238 0.762 31 H 0.052 0.948 32 H 0.024 0.976 33 H 0.075 0.925 34 H 0.109 0.891 35 H 0.071 0.929 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.072 0.928 41 H 0.087 0.913 42 H 0.081 0.919 43 H 0.087 0.913 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.472 -8.557 -26.615 28.696 hybrid contribution -0.152 -0.230 1.394 1.422 sum 6.319 -8.787 -25.221 27.445 Atomic orbital electron populations 1.21864 0.94613 1.02839 1.01085 1.21408 0.96396 1.00021 0.93158 0.91792 1.22737 1.03174 0.95583 0.79680 1.47545 1.35364 1.08317 1.16044 1.23722 1.04650 1.02812 0.89286 1.22638 1.02264 0.90340 0.99511 1.17365 0.93608 0.97091 0.85500 1.21287 0.98374 1.43873 0.92626 0.93818 1.25802 0.96945 0.95454 1.00847 1.70043 1.17972 1.49162 1.19574 0.85492 0.79026 0.78492 0.78280 1.20201 1.19799 1.19579 1.74978 1.13153 1.27661 1.02129 1.78021 1.21772 0.96760 1.13123 1.21068 0.95338 1.00049 0.92048 1.21720 0.94853 1.00789 0.98656 1.21511 1.00314 0.99601 0.93975 1.21558 0.95824 1.00478 0.98079 1.21513 0.95552 1.01010 0.97290 1.21623 1.00722 0.98971 0.94004 0.96104 0.91039 0.90485 0.87273 0.84676 0.76204 0.94842 0.97620 0.92487 0.89054 0.92921 0.91225 0.91135 0.91940 0.91503 0.92838 0.91263 0.91860 0.91305 0.93029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.78 8.73 71.98 0.63 -2.15 16 2 C -0.09 -1.61 2.02 -10.79 -0.02 -1.63 16 3 H 0.06 1.49 8.00 -2.39 -0.02 1.47 16 4 C 0.11 2.04 5.63 86.38 0.49 2.53 16 5 N -0.28 -8.82 2.89 -347.73 -1.01 -9.82 16 6 C -0.05 -1.92 11.49 83.49 0.96 -0.96 16 7 C -0.01 -0.43 6.44 41.60 0.27 -0.17 16 8 C 0.10 5.68 5.55 29.10 0.16 5.84 16 9 C -0.52 -31.48 9.09 25.60 0.23 -31.25 16 10 H 0.04 2.70 7.74 -2.91 -0.02 2.68 16 11 C 0.01 0.45 5.46 84.66 0.46 0.91 16 12 N -0.93 -56.29 13.29 21.45 0.28 -56.01 16 13 Si 0.96 46.22 29.54 68.60 2.03 48.24 16 14 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 15 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 16 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 17 N -0.31 -15.60 12.40 -48.60 -0.60 -16.20 16 18 N -0.12 -4.87 12.82 37.02 0.47 -4.39 16 19 C -0.07 -0.81 1.77 -10.79 -0.02 -0.82 16 20 C -0.12 -1.53 4.86 30.60 0.15 -1.38 16 21 C -0.12 -1.22 5.92 30.60 0.18 -1.03 16 22 C -0.12 -1.29 5.92 30.59 0.18 -1.11 16 23 C -0.12 -1.20 5.92 30.59 0.18 -1.02 16 24 C -0.12 -1.44 4.85 30.60 0.15 -1.29 16 25 H 0.02 0.54 7.75 -2.39 -0.02 0.52 16 26 H 0.07 1.21 6.43 -2.38 -0.02 1.20 16 27 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.11 1.84 6.18 -2.39 -0.01 1.82 16 29 H 0.14 1.64 8.07 -2.39 -0.02 1.62 16 30 H 0.22 5.72 8.06 -2.91 -0.02 5.69 16 31 H 0.03 1.80 8.12 -2.38 -0.02 1.78 16 32 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 33 H 0.27 15.10 8.31 -92.70 -0.77 14.33 16 34 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.07 0.80 6.32 -2.39 -0.02 0.78 16 37 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 41 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 42 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 43 H 0.07 0.83 6.43 -2.39 -0.02 0.82 16 44 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -73.75 346.89 6.13 -67.62 By element: Atomic # 1 Polarization: 3.15 SS G_CDS: 0.95 Total: 4.10 kcal Atomic # 6 Polarization: -37.54 SS G_CDS: 4.00 Total: -33.54 kcal Atomic # 7 Polarization: -85.58 SS G_CDS: -0.85 Total: -86.42 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.24 kcal Total: -73.75 6.13 -67.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603240511.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.126 kcal (2) G-P(sol) polarization free energy of solvation -73.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds