Wall clock time and date at job start Mon Mar 30 2020 01:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46967 * 2 1 4 4 C 1.53001 * 109.47011 * 239.99708 * 2 1 3 5 5 C 1.52999 * 109.47011 * 179.97438 * 4 2 1 6 6 C 1.52998 * 109.47006 * 60.00107 * 5 4 2 7 7 C 1.52998 * 109.47509 * 299.99771 * 6 5 4 8 8 H 1.09002 * 109.46821 * 300.00416 * 7 6 5 9 9 C 1.52999 * 109.47602 * 180.02562 * 7 6 5 10 10 C 1.52995 * 109.47365 * 64.99577 * 9 7 6 11 11 N 1.46495 * 109.47191 * 180.02562 * 10 9 7 12 12 C 1.35313 * 125.86467 * 125.33273 * 11 10 9 13 13 C 1.35351 * 106.17351 * 180.12136 * 12 11 10 14 14 C 1.50706 * 126.75451 * 179.85157 * 13 12 11 15 15 C 1.50698 * 109.47294 * 124.70424 * 14 13 12 16 16 H 1.08005 * 119.99819 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00046 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00192 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99979 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47297 * 180.02562 * 19 17 15 21 21 H 1.48503 * 109.47261 * 60.00310 * 19 17 15 22 22 H 1.48500 * 109.47454 * 300.00304 * 19 17 15 23 23 N 1.33767 * 106.49789 * 359.58591 * 13 12 11 24 24 N 1.28638 * 108.88608 * 0.26431 * 23 13 12 25 25 C 1.52998 * 109.47006 * 119.99816 * 2 1 3 26 26 H 1.09002 * 109.47177 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46816 * 300.00183 * 1 2 3 28 28 H 1.08996 * 109.47225 * 59.99908 * 1 2 3 29 29 H 1.08996 * 109.46813 * 60.00132 * 4 2 1 30 30 H 1.09002 * 109.46971 * 299.99907 * 4 2 1 31 31 H 1.09002 * 109.47177 * 299.99781 * 5 4 2 32 32 H 1.09000 * 109.47249 * 180.02562 * 5 4 2 33 33 H 1.09007 * 109.46995 * 179.97438 * 6 5 4 34 34 H 1.08993 * 109.47304 * 60.00419 * 6 5 4 35 35 H 1.09002 * 109.46636 * 305.00294 * 9 7 6 36 36 H 1.09001 * 109.47216 * 185.00133 * 9 7 6 37 37 H 1.09001 * 109.46855 * 60.00214 * 10 9 7 38 38 H 1.08999 * 109.47133 * 300.00892 * 10 9 7 39 39 H 1.08000 * 126.91684 * 359.96423 * 12 11 10 40 40 H 1.09001 * 109.46953 * 4.70982 * 14 13 12 41 41 H 1.08993 * 109.46894 * 244.70612 * 14 13 12 42 42 H 0.97001 * 119.99934 * 359.97438 * 18 17 15 43 43 H 1.09002 * 109.47419 * 59.99821 * 25 2 1 44 44 H 1.09003 * 109.47333 * 299.99684 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5700 -0.7208 -1.2495 6 6 4.0805 -1.4416 -0.0003 7 6 3.5705 -0.7203 1.2490 8 1 3.9335 0.3075 1.2486 9 6 4.0815 -1.4408 2.4982 10 6 5.6063 -1.3319 2.5620 11 7 6.0956 -2.0222 3.7579 12 6 7.0296 -3.0010 3.7818 13 6 7.1749 -3.3517 5.0810 14 6 8.0997 -4.4062 5.6324 15 6 8.9866 -3.7952 6.6865 16 1 8.8899 -2.7481 6.9329 17 6 9.9206 -4.5732 7.3372 18 7 10.0380 -5.8483 7.0375 19 14 11.0194 -3.8160 8.6444 20 1 11.9307 -4.8550 9.1876 21 1 10.1800 -3.2705 9.7413 22 1 11.8213 -2.7202 8.0431 23 7 6.3405 -2.5743 5.7800 24 7 5.7156 -1.7976 4.9670 25 6 2.0400 -0.7212 1.2493 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.6766 -0.2075 -2.1392 30 1 1.6766 -1.7490 -1.2491 31 1 3.9329 0.3070 -1.2499 32 1 3.9333 -1.2342 -2.1397 33 1 5.1705 -1.4416 -0.0007 34 1 3.7176 -2.4693 0.0000 35 1 3.7939 -2.4913 2.4550 36 1 3.6470 -0.9813 3.3860 37 1 5.8940 -0.2814 2.6052 38 1 6.0408 -1.7913 1.6742 39 1 7.5520 -3.4200 2.9345 40 1 8.7156 -4.8065 4.8270 41 1 7.5114 -5.2105 6.0740 42 1 9.4672 -6.2416 6.3590 43 1 1.6766 -1.7489 1.2493 44 1 1.6767 -0.2073 2.1393 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603245724.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:00 Heat of formation + Delta-G solvation = 27.374009 kcal Electronic energy + Delta-G solvation = -20999.798715 eV Core-core repulsion = 17951.493245 eV Total energy + Delta-G solvation = -3048.305470 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -44.11936 -40.07824 -36.84231 -35.75734 -34.05926 -32.81024 -32.64689 -29.90532 -28.84294 -27.21377 -25.62675 -25.24828 -22.96479 -22.71719 -22.01402 -21.02716 -20.64715 -19.02357 -18.00181 -17.27943 -16.17697 -16.08517 -15.74030 -15.68373 -15.45151 -15.22579 -14.84580 -14.74238 -14.25693 -14.10436 -13.72157 -13.47824 -13.23087 -13.11939 -12.84497 -12.66101 -12.53184 -12.48877 -12.26270 -12.07647 -11.89666 -11.85849 -11.69549 -11.62436 -11.31098 -11.14049 -10.91746 -10.82986 -10.76565 -10.55117 -9.90987 -8.66129 -6.35577 0.69894 1.52270 1.54660 1.61213 1.67856 1.82323 2.58196 3.16420 3.41843 3.55619 3.68660 3.78256 3.85387 3.96864 4.11059 4.20052 4.24445 4.33848 4.35243 4.41250 4.50248 4.55776 4.61732 4.70534 4.76431 4.77815 4.83106 4.94945 4.99845 5.00837 5.08138 5.14989 5.20249 5.29315 5.30380 5.31087 5.34779 5.40651 5.44329 5.47177 5.64218 5.79860 5.97482 6.17978 6.59265 7.40380 7.64285 8.74641 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.048023 B = 0.002657 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.915580 B =10535.505616 C =10746.008050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.090 4.090 3 H 0.072 0.928 4 C -0.114 4.114 5 C -0.118 4.118 6 C -0.120 4.120 7 C -0.073 4.073 8 H 0.084 0.916 9 C -0.119 4.119 10 C 0.107 3.893 11 N -0.282 5.282 12 C -0.053 4.053 13 C -0.008 4.008 14 C 0.087 3.913 15 C -0.599 4.599 16 H 0.035 0.965 17 C -0.032 4.032 18 N -0.933 5.933 19 Si 1.116 2.884 20 H -0.276 1.276 21 H -0.278 1.278 22 H -0.269 1.269 23 N -0.312 5.312 24 N -0.117 5.117 25 C -0.109 4.109 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.059 0.941 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.110 0.890 38 H 0.136 0.864 39 H 0.224 0.776 40 H 0.031 0.969 41 H 0.002 0.998 42 H 0.259 0.741 43 H 0.056 0.944 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.866 12.612 -22.309 30.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.108 4.108 3 H 0.090 0.910 4 C -0.152 4.152 5 C -0.156 4.156 6 C -0.157 4.157 7 C -0.092 4.092 8 H 0.102 0.898 9 C -0.157 4.157 10 C -0.012 4.012 11 N -0.077 5.077 12 C -0.203 4.203 13 C -0.146 4.146 14 C 0.048 3.952 15 C -0.638 4.638 16 H 0.054 0.946 17 C -0.230 4.230 18 N -0.571 5.571 19 Si 0.938 3.062 20 H -0.201 1.201 21 H -0.204 1.204 22 H -0.195 1.195 23 N -0.178 5.178 24 N -0.095 5.095 25 C -0.146 4.146 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.128 0.872 38 H 0.154 0.846 39 H 0.241 0.759 40 H 0.049 0.951 41 H 0.020 0.980 42 H 0.068 0.932 43 H 0.075 0.925 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -15.616 13.147 -20.377 28.843 hybrid contribution -0.763 -0.569 -1.501 1.777 sum -16.379 12.578 -21.878 30.085 Atomic orbital electron populations 1.21836 0.95168 1.01718 1.01868 1.21113 0.95518 0.99601 0.94571 0.91007 1.21602 0.95770 1.00416 0.97390 1.21521 0.95413 1.01034 0.97587 1.21709 1.00974 0.99271 0.93786 1.21055 0.95676 0.99916 0.92556 0.89757 1.21845 0.92233 1.01808 0.99849 1.22650 0.96874 0.99108 0.82522 1.47670 1.26434 1.25327 1.08293 1.23758 0.99195 0.97025 1.00353 1.22411 0.99705 1.01092 0.91434 1.17530 0.91292 0.90762 0.95593 1.22139 1.21005 0.97373 1.23235 0.94629 1.27300 0.99031 0.94981 1.01682 1.70915 1.40624 1.12807 1.32729 0.82941 0.74684 0.74995 0.73624 1.20122 1.20380 1.19470 1.74981 1.09554 1.06493 1.26785 1.78034 1.22050 1.21485 0.87971 1.21629 0.94457 1.00625 0.97936 0.93016 0.92862 0.92108 0.91577 0.92502 0.91493 0.91456 0.90713 0.92270 0.92051 0.91821 0.87171 0.84614 0.75909 0.95126 0.97960 0.93180 0.92547 0.92358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.19 71.98 0.66 -0.92 16 2 C -0.09 -0.98 2.72 -10.79 -0.03 -1.01 16 3 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 4 C -0.11 -1.14 5.20 30.59 0.16 -0.98 16 5 C -0.12 -1.09 5.92 30.59 0.18 -0.91 16 6 C -0.12 -1.24 4.96 30.59 0.15 -1.09 16 7 C -0.07 -0.89 2.19 -10.78 -0.02 -0.91 16 8 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 9 C -0.12 -2.08 4.81 30.59 0.15 -1.93 16 10 C 0.11 1.97 6.21 86.38 0.54 2.51 16 11 N -0.28 -8.96 3.44 -347.75 -1.20 -10.16 16 12 C -0.05 -1.86 11.49 83.49 0.96 -0.91 16 13 C -0.01 -0.38 6.44 41.60 0.27 -0.11 16 14 C 0.09 4.75 4.86 29.10 0.14 4.89 16 15 C -0.60 -36.33 9.09 25.60 0.23 -36.10 16 16 H 0.04 2.23 7.74 -2.91 -0.02 2.20 16 17 C -0.03 -1.93 5.46 84.65 0.46 -1.47 16 18 N -0.93 -58.17 13.65 21.45 0.29 -57.87 16 19 Si 1.12 52.67 29.90 68.60 2.05 54.73 16 20 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 21 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 22 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 23 N -0.31 -15.66 12.40 -48.60 -0.60 -16.26 16 24 N -0.12 -4.82 12.91 37.02 0.48 -4.34 16 25 C -0.11 -1.42 4.49 30.61 0.14 -1.28 16 26 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.07 0.62 6.57 -2.38 -0.02 0.60 16 34 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.06 1.37 8.12 -2.39 -0.02 1.35 16 37 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.14 1.60 6.49 -2.39 -0.02 1.58 16 39 H 0.22 5.67 8.06 -2.91 -0.02 5.65 16 40 H 0.03 1.61 7.99 -2.39 -0.02 1.59 16 41 H 0.00 0.14 8.01 -2.39 -0.02 0.12 16 42 H 0.26 16.06 7.22 -92.71 -0.67 15.39 16 43 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -75.89 350.84 6.05 -69.83 By element: Atomic # 1 Polarization: 3.26 SS G_CDS: 1.04 Total: 4.30 kcal Atomic # 6 Polarization: -44.21 SS G_CDS: 3.99 Total: -40.23 kcal Atomic # 7 Polarization: -87.60 SS G_CDS: -1.03 Total: -88.63 kcal Atomic # 14 Polarization: 52.67 SS G_CDS: 2.05 Total: 54.73 kcal Total: -75.89 6.05 -69.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603245724.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.208 kcal (2) G-P(sol) polarization free energy of solvation -75.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds