Wall clock time and date at job start Mon Mar 30 2020 01:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52997 * 109.47164 * 239.99996 * 2 1 3 5 5 C 1.53002 * 109.46978 * 299.99874 * 4 2 1 6 6 C 1.53002 * 109.47454 * 300.00078 * 5 4 2 7 7 C 1.53004 * 109.46492 * 59.99995 * 6 5 4 8 8 H 1.09002 * 109.47347 * 60.00315 * 7 6 5 9 9 C 1.53002 * 109.46492 * 180.02562 * 7 6 5 10 10 C 1.52999 * 109.47251 * 295.00252 * 9 7 6 11 11 N 1.46497 * 109.47328 * 180.02562 * 10 9 7 12 12 C 1.35314 * 125.87204 * 124.99283 * 11 10 9 13 13 C 1.35352 * 106.17615 * 179.97438 * 12 11 10 14 14 C 1.50704 * 126.75146 * 180.02562 * 13 12 11 15 15 C 1.50696 * 109.47053 * 125.00689 * 14 13 12 16 16 H 1.08000 * 120.00346 * 359.97438 * 15 14 13 17 17 C 1.37875 * 119.99952 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00071 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 120.00137 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47292 * 59.99246 * 19 17 15 21 21 H 1.48496 * 109.47178 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.46596 * 299.99253 * 19 17 15 23 23 N 1.33777 * 106.49772 * 0.02562 * 13 12 11 24 24 N 1.28629 * 108.88311 * 359.73336 * 23 13 12 25 25 C 1.52997 * 109.47530 * 299.99890 * 7 6 5 26 26 H 1.09001 * 109.46801 * 300.00112 * 1 2 3 27 27 H 1.09001 * 109.46998 * 59.99708 * 1 2 3 28 28 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47375 * 59.99966 * 4 2 1 30 30 H 1.09002 * 109.46777 * 180.02562 * 4 2 1 31 31 H 1.09004 * 109.47006 * 180.02562 * 5 4 2 32 32 H 1.09002 * 109.47097 * 60.00199 * 5 4 2 33 33 H 1.09002 * 109.47067 * 300.00138 * 6 5 4 34 34 H 1.08999 * 109.46623 * 179.97438 * 6 5 4 35 35 H 1.09000 * 109.47089 * 55.00113 * 9 7 6 36 36 H 1.09000 * 109.47173 * 175.00190 * 9 7 6 37 37 H 1.09000 * 109.46961 * 299.99940 * 10 9 7 38 38 H 1.08996 * 109.47443 * 60.00198 * 10 9 7 39 39 H 1.07993 * 126.91388 * 0.02887 * 12 11 10 40 40 H 1.09000 * 109.46927 * 245.00235 * 14 13 12 41 41 H 1.08993 * 109.46893 * 5.00274 * 14 13 12 42 42 H 0.97001 * 119.99929 * 180.02562 * 18 17 15 43 43 H 1.09002 * 109.47153 * 300.00544 * 25 7 6 44 44 H 1.08993 * 109.47194 * 180.02562 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.5301 -2.1638 -1.2492 6 6 2.0400 -2.8850 0.0001 7 6 1.5299 -2.1637 1.2493 8 1 0.4399 -2.1637 1.2492 9 6 2.0404 -2.8846 2.4985 10 6 1.4309 -4.2864 2.5633 11 7 1.9192 -4.9765 3.7597 12 6 1.1498 -5.5329 4.7237 13 6 2.0046 -6.0576 5.6325 14 6 1.6379 -6.7888 6.8982 15 6 2.3066 -8.1392 6.9099 16 1 2.9341 -8.4383 6.0833 17 6 2.1167 -8.9934 7.9754 18 7 1.3522 -8.6295 8.9817 19 14 2.9462 -10.6671 7.9902 20 1 4.4194 -10.4900 7.9305 21 1 2.5848 -11.3877 9.2373 22 1 2.4941 -11.4539 6.8146 23 7 3.2390 -5.7994 5.1863 24 7 3.1541 -5.1623 4.0721 25 6 2.0399 -0.7212 1.2493 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6767 -0.2074 -2.1392 30 1 3.1301 -0.7216 -1.2489 31 1 1.8938 -2.6777 -2.1389 32 1 0.4401 -2.1638 -1.2492 33 1 3.1301 -2.8850 0.0001 34 1 1.6763 -3.9125 0.0002 35 1 3.1268 -2.9624 2.4547 36 1 1.7520 -2.3217 3.3862 37 1 0.3446 -4.2086 2.6071 38 1 1.7193 -4.8494 1.6756 39 1 0.0707 -5.5549 4.7601 40 1 1.9704 -6.2113 7.7608 41 1 0.5566 -6.9184 6.9427 42 1 1.2189 -9.2303 9.7315 43 1 3.1300 -0.7212 1.2493 44 1 1.6769 -0.2075 2.1394 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603245725.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:03 Heat of formation + Delta-G solvation = 36.061105 kcal Electronic energy + Delta-G solvation = -21124.605752 eV Core-core repulsion = 18076.676982 eV Total energy + Delta-G solvation = -3047.928769 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.01621 -40.32049 -36.73581 -35.40350 -33.80953 -32.82711 -32.33825 -29.88541 -29.03988 -27.57841 -25.58847 -25.29889 -23.23222 -22.61518 -22.15105 -21.10521 -19.51210 -18.53587 -17.98780 -17.23159 -16.61088 -16.36403 -15.88464 -15.54196 -15.25009 -15.08181 -14.74276 -14.51590 -14.29598 -13.95467 -13.66287 -13.44694 -13.30351 -13.01239 -12.79826 -12.64200 -12.55447 -12.43372 -12.24305 -12.22558 -11.89079 -11.85246 -11.69003 -11.61971 -11.36485 -11.15035 -10.96133 -10.84060 -10.60003 -10.55782 -9.83811 -8.18403 -6.27151 0.79389 1.40130 1.43940 1.51539 1.63101 1.78722 2.44763 3.14204 3.51379 3.63945 3.71732 3.80456 3.89355 4.03937 4.18784 4.26741 4.32618 4.40853 4.46058 4.50671 4.53094 4.56007 4.66457 4.70844 4.71107 4.86709 4.93138 5.01999 5.07604 5.11148 5.17191 5.20553 5.30423 5.33357 5.36734 5.42741 5.46648 5.49503 5.53288 5.55485 5.70052 5.77070 5.89103 6.23260 6.80877 7.39348 7.74344 8.92379 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.047921 B = 0.002717 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.153457 B =10303.819860 C =10508.968853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.090 4.090 3 H 0.067 0.933 4 C -0.115 4.115 5 C -0.119 4.119 6 C -0.120 4.120 7 C -0.073 4.073 8 H 0.092 0.908 9 C -0.120 4.120 10 C 0.107 3.893 11 N -0.283 5.283 12 C -0.054 4.054 13 C -0.010 4.010 14 C 0.103 3.897 15 C -0.525 4.525 16 H 0.044 0.956 17 C 0.008 3.992 18 N -0.927 5.927 19 Si 0.962 3.038 20 H -0.276 1.276 21 H -0.275 1.275 22 H -0.268 1.268 23 N -0.313 5.313 24 N -0.119 5.119 25 C -0.110 4.110 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.053 0.947 34 H 0.069 0.931 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.137 0.863 38 H 0.109 0.891 39 H 0.224 0.776 40 H 0.006 0.994 41 H 0.034 0.966 42 H 0.266 0.734 43 H 0.053 0.947 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.855 17.677 -22.744 29.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.108 4.108 3 H 0.086 0.914 4 C -0.153 4.153 5 C -0.156 4.156 6 C -0.158 4.158 7 C -0.092 4.092 8 H 0.110 0.890 9 C -0.158 4.158 10 C -0.012 4.012 11 N -0.079 5.079 12 C -0.204 4.204 13 C -0.148 4.148 14 C 0.064 3.936 15 C -0.563 4.563 16 H 0.062 0.938 17 C -0.190 4.190 18 N -0.567 5.567 19 Si 0.786 3.214 20 H -0.202 1.202 21 H -0.200 1.200 22 H -0.193 1.193 23 N -0.179 5.179 24 N -0.098 5.098 25 C -0.147 4.147 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.072 0.928 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.155 0.845 38 H 0.127 0.873 39 H 0.241 0.759 40 H 0.025 0.975 41 H 0.052 0.948 42 H 0.075 0.925 43 H 0.072 0.928 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.452 17.881 -23.037 29.500 hybrid contribution -0.404 -0.983 0.753 1.302 sum -4.857 16.898 -22.285 28.385 Atomic orbital electron populations 1.21943 0.94710 1.02437 1.01661 1.21074 0.96414 0.98886 0.94466 0.91428 1.21571 1.00234 0.95892 0.97567 1.21558 1.01403 0.95327 0.97327 1.21696 1.00603 0.99258 0.94213 1.21079 1.01388 0.94366 0.92348 0.88961 1.21859 1.01144 0.93134 0.99693 1.22628 1.02088 0.93474 0.82982 1.47659 1.04570 1.36898 1.18772 1.23781 1.00937 1.04365 0.91341 1.22681 0.89199 1.02072 1.00895 1.17371 0.96513 0.92723 0.86974 1.21253 1.29258 1.00939 1.04856 0.93809 1.25799 0.95911 1.02389 0.94914 1.70032 1.39308 1.38270 1.09108 0.85558 0.78803 0.79207 0.77806 1.20169 1.19996 1.19288 1.74980 1.24295 1.13927 1.04686 1.78029 1.02173 1.18159 1.11460 1.21585 1.00271 0.94829 0.98034 0.92904 0.92500 0.91587 0.91542 0.92699 0.91901 0.90868 0.92801 0.91218 0.92117 0.91803 0.84532 0.87333 0.75933 0.97543 0.94756 0.92467 0.92786 0.92048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 8.50 71.98 0.61 -0.81 16 2 C -0.09 -0.98 3.19 -10.79 -0.03 -1.02 16 3 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 4 C -0.12 -1.22 5.45 30.59 0.17 -1.05 16 5 C -0.12 -1.21 5.65 30.60 0.17 -1.04 16 6 C -0.12 -1.45 4.96 30.60 0.15 -1.30 16 7 C -0.07 -0.89 1.92 -10.79 -0.02 -0.91 16 8 H 0.09 0.89 6.43 -2.39 -0.02 0.88 16 9 C -0.12 -2.11 4.81 30.59 0.15 -1.97 16 10 C 0.11 1.99 6.21 86.38 0.54 2.52 16 11 N -0.28 -9.01 3.44 -347.75 -1.20 -10.21 16 12 C -0.05 -1.90 11.49 83.49 0.96 -0.94 16 13 C -0.01 -0.48 6.44 41.60 0.27 -0.21 16 14 C 0.10 5.65 5.55 29.10 0.16 5.82 16 15 C -0.52 -31.51 9.09 25.60 0.23 -31.27 16 16 H 0.04 2.69 7.74 -2.91 -0.02 2.67 16 17 C 0.01 0.47 5.46 84.65 0.46 0.94 16 18 N -0.93 -56.17 13.29 21.45 0.28 -55.88 16 19 Si 0.96 46.06 29.54 68.60 2.03 48.09 16 20 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 21 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 22 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 23 N -0.31 -15.59 12.40 -48.59 -0.60 -16.20 16 24 N -0.12 -4.93 12.92 37.02 0.48 -4.45 16 25 C -0.11 -1.43 4.73 30.59 0.14 -1.28 16 26 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.07 0.57 4.81 -2.39 -0.01 0.56 16 29 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.05 0.65 8.14 -2.39 -0.02 0.64 16 31 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 32 H 0.07 0.65 6.43 -2.39 -0.02 0.63 16 33 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.07 0.76 6.57 -2.39 -0.02 0.75 16 35 H 0.06 1.35 8.12 -2.39 -0.02 1.33 16 36 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.14 1.56 8.07 -2.39 -0.02 1.54 16 38 H 0.11 1.77 6.57 -2.39 -0.02 1.75 16 39 H 0.22 5.67 8.06 -2.91 -0.02 5.65 16 40 H 0.01 0.38 8.14 -2.39 -0.02 0.37 16 41 H 0.03 1.84 8.12 -2.39 -0.02 1.82 16 42 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 43 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -73.61 345.13 5.91 -67.70 By element: Atomic # 1 Polarization: 2.53 SS G_CDS: 0.96 Total: 3.49 kcal Atomic # 6 Polarization: -36.49 SS G_CDS: 3.96 Total: -32.53 kcal Atomic # 7 Polarization: -85.71 SS G_CDS: -1.03 Total: -86.74 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Total: -73.61 5.91 -67.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603245725.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.759 kcal (2) G-P(sol) polarization free energy of solvation -73.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds