Wall clock time and date at job start Mon Mar 30 2020 01:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.46831 * 2 1 4 4 C 1.52998 * 109.47368 * 119.99675 * 2 1 3 5 5 C 1.53004 * 109.46999 * 60.00084 * 4 2 1 6 6 C 1.52994 * 109.46990 * 60.00001 * 5 4 2 7 7 C 1.52998 * 109.47249 * 299.99846 * 6 5 4 8 8 H 1.08997 * 109.47259 * 300.00192 * 7 6 5 9 9 C 1.53004 * 109.47144 * 180.02562 * 7 6 5 10 10 C 1.52999 * 109.47081 * 65.00238 * 9 7 6 11 11 N 1.46497 * 109.46990 * 180.02562 * 10 9 7 12 12 C 1.35317 * 125.87010 * 125.00098 * 11 10 9 13 13 C 1.35348 * 106.17735 * 180.24864 * 12 11 10 14 14 C 1.50695 * 126.75026 * 179.78015 * 13 12 11 15 15 C 1.50705 * 109.47409 * 124.99927 * 14 13 12 16 16 H 1.07996 * 119.99541 * 359.97438 * 15 14 13 17 17 C 1.37875 * 119.99797 * 180.02562 * 15 14 13 18 18 N 1.31508 * 120.00511 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 119.99618 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47381 * 59.99732 * 19 17 15 21 21 H 1.48506 * 109.47245 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47428 * 299.99787 * 19 17 15 23 23 N 1.33774 * 106.49647 * 359.63857 * 13 12 11 24 24 N 1.28636 * 108.88665 * 0.37294 * 23 13 12 25 25 C 1.52994 * 109.47134 * 239.99988 * 2 1 3 26 26 H 1.09003 * 109.47127 * 300.00000 * 1 2 3 27 27 H 1.09004 * 109.47491 * 60.00111 * 1 2 3 28 28 H 1.09000 * 109.47155 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47262 * 300.00243 * 4 2 1 30 30 H 1.08997 * 109.47259 * 180.02562 * 4 2 1 31 31 H 1.08997 * 109.47088 * 300.00071 * 5 4 2 32 32 H 1.08995 * 109.46740 * 180.02562 * 5 4 2 33 33 H 1.09005 * 109.47271 * 179.97438 * 6 5 4 34 34 H 1.08997 * 109.47147 * 60.00107 * 6 5 4 35 35 H 1.09005 * 109.46933 * 304.99850 * 9 7 6 36 36 H 1.09005 * 109.47324 * 185.00232 * 9 7 6 37 37 H 1.09000 * 109.46989 * 60.00395 * 10 9 7 38 38 H 1.08996 * 109.46805 * 299.99405 * 10 9 7 39 39 H 1.08002 * 126.90702 * 359.97438 * 12 11 10 40 40 H 1.09009 * 109.46604 * 244.99136 * 14 13 12 41 41 H 1.08993 * 109.47327 * 4.99084 * 14 13 12 42 42 H 0.96998 * 120.00536 * 180.02562 * 18 17 15 43 43 H 1.08997 * 109.47147 * 179.97438 * 25 2 1 44 44 H 1.09003 * 109.47563 * 60.00134 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.5301 -2.1637 1.2493 6 6 2.0401 -2.8849 0.0001 7 6 1.5300 -2.1638 -1.2491 8 1 0.4400 -2.1638 -1.2491 9 6 2.0395 -2.8854 -2.4984 10 6 1.4289 -4.2869 -2.5624 11 7 1.9173 -4.9780 -3.7582 12 6 2.5347 -6.1819 -3.7816 13 6 2.8176 -6.4354 -5.0807 14 6 3.5106 -7.6551 -5.6312 15 6 2.6453 -8.2900 -6.6892 16 1 1.6890 -7.8541 -6.9378 17 6 3.0742 -9.4279 -7.3390 18 7 4.2384 -9.9590 -7.0359 19 14 2.0013 -10.2152 -8.6499 20 1 1.7662 -9.2425 -9.7471 21 1 2.6843 -11.4171 -9.1924 22 1 0.7007 -10.6117 -8.0528 23 7 2.3582 -5.3918 -5.7802 24 7 1.8331 -4.5443 -4.9673 25 6 2.0400 -0.7212 -1.2492 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.6767 -0.2073 2.1392 30 1 3.1300 -0.7207 1.2495 31 1 0.4401 -2.1637 1.2493 32 1 1.8931 -2.6773 2.1395 33 1 1.6771 -3.9128 0.0003 34 1 3.1300 -2.8849 0.0001 35 1 3.1258 -2.9639 -2.4549 36 1 1.7511 -2.3226 -3.3862 37 1 0.3427 -4.2082 -2.6059 38 1 1.7174 -4.8497 -1.6747 39 1 2.7607 -6.8115 -2.9337 40 1 4.4653 -7.3638 -6.0693 41 1 3.6832 -8.3693 -4.8261 42 1 4.5403 -10.7593 -7.4933 43 1 3.1299 -0.7208 -1.2494 44 1 1.6767 -0.2074 -2.1392 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603245726.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:07 Heat of formation + Delta-G solvation = 54.911591 kcal Electronic energy + Delta-G solvation = -21131.748127 eV Core-core repulsion = 18084.636776 eV Total energy + Delta-G solvation = -3047.111351 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.45638 -39.74669 -35.64001 -33.50734 -32.58986 -31.79502 -30.98968 -28.77567 -27.29764 -27.05273 -24.52131 -23.33849 -22.68251 -21.38919 -20.95454 -19.87571 -18.92227 -16.91504 -16.21420 -15.97046 -15.52657 -15.29754 -14.73419 -14.49170 -14.23537 -14.15064 -14.01742 -13.27835 -12.95525 -12.73789 -12.66844 -12.16258 -12.14661 -11.92431 -11.78755 -11.60108 -11.52022 -11.33247 -11.09158 -10.94502 -10.68983 -10.62502 -10.54882 -10.33243 -10.21929 -10.02235 -9.65518 -9.39321 -9.23469 -8.40265 -8.08569 -5.96278 -3.96716 2.28770 2.86203 3.40411 3.43038 3.45995 3.56018 4.22660 4.32002 4.35390 4.53511 4.57982 4.66094 4.79736 4.92811 5.00775 5.03155 5.06802 5.13661 5.23067 5.26488 5.28806 5.36535 5.40742 5.49324 5.53365 5.62639 5.66283 5.70694 5.79768 5.83483 5.88555 5.92160 5.98668 6.00818 6.09126 6.13511 6.21393 6.39202 7.17738 7.25445 7.56184 7.65880 8.01503 8.40668 9.06517 9.36631 9.65876 11.14868 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.048113 B = 0.002722 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.818800 B =10282.921753 C =10484.843963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.092 4.092 3 H 0.068 0.932 4 C -0.115 4.115 5 C -0.121 4.121 6 C -0.120 4.120 7 C -0.084 4.084 8 H 0.077 0.923 9 C -0.127 4.127 10 C 0.121 3.879 11 N -0.303 5.303 12 C -0.084 4.084 13 C 0.033 3.967 14 C 0.092 3.908 15 C -0.503 4.503 16 H 0.058 0.942 17 C 0.056 3.944 18 N -0.899 5.899 19 Si 0.897 3.103 20 H -0.275 1.275 21 H -0.288 1.288 22 H -0.278 1.278 23 N -0.263 5.263 24 N -0.109 5.109 25 C -0.109 4.109 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.099 0.901 39 H 0.180 0.820 40 H 0.038 0.962 41 H 0.036 0.964 42 H 0.262 0.738 43 H 0.063 0.937 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.439 18.062 20.081 27.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.110 4.110 3 H 0.086 0.914 4 C -0.152 4.152 5 C -0.159 4.159 6 C -0.157 4.157 7 C -0.103 4.103 8 H 0.096 0.904 9 C -0.166 4.166 10 C -0.001 4.001 11 N -0.099 5.099 12 C -0.233 4.233 13 C -0.104 4.104 14 C 0.054 3.946 15 C -0.542 4.542 16 H 0.076 0.924 17 C -0.144 4.144 18 N -0.539 5.539 19 Si 0.724 3.276 20 H -0.201 1.201 21 H -0.213 1.213 22 H -0.204 1.204 23 N -0.130 5.130 24 N -0.088 5.088 25 C -0.146 4.146 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.100 0.900 37 H 0.108 0.892 38 H 0.117 0.883 39 H 0.197 0.803 40 H 0.056 0.944 41 H 0.054 0.946 42 H 0.071 0.929 43 H 0.082 0.918 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.818 19.064 19.140 27.634 hybrid contribution -0.225 -1.359 0.179 1.389 sum -6.043 17.706 19.320 26.893 Atomic orbital electron populations 1.21953 0.95338 1.02177 1.01435 1.21091 0.95956 0.99022 0.94952 0.91403 1.21568 1.00557 0.95724 0.97398 1.21562 1.01021 0.95574 0.97701 1.21693 1.01119 0.98862 0.94052 1.21150 1.00830 0.94838 0.93500 0.90435 1.21928 1.01329 0.94017 0.99281 1.21994 1.00134 0.94017 0.83982 1.47209 1.40165 1.14700 1.07830 1.23366 1.07777 0.90892 1.01233 1.23015 1.00372 0.97834 0.89171 1.17713 0.94971 0.85794 0.96144 1.21015 1.04158 1.09425 1.19573 0.92357 1.24969 0.95232 0.97014 0.97207 1.69932 1.19477 1.21848 1.42625 0.86577 0.80373 0.78545 0.82063 1.20094 1.21326 1.20352 1.75071 1.11791 1.01504 1.24682 1.78150 1.21010 1.22910 0.86717 1.21586 1.00730 0.94692 0.97604 0.93012 0.92769 0.91949 0.92238 0.92054 0.91664 0.92131 0.91801 0.91719 0.91087 0.89991 0.89226 0.88273 0.80291 0.94356 0.94609 0.92882 0.91845 0.91717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 8.50 37.16 0.32 -0.61 16 2 C -0.09 -0.58 3.19 -90.62 -0.29 -0.87 16 3 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 4 C -0.11 -0.70 5.45 -26.73 -0.15 -0.85 16 5 C -0.12 -0.74 5.65 -26.73 -0.15 -0.89 16 6 C -0.12 -0.80 4.96 -26.74 -0.13 -0.93 16 7 C -0.08 -0.61 1.91 -90.62 -0.17 -0.79 16 8 H 0.08 0.55 6.43 -51.93 -0.33 0.21 16 9 C -0.13 -1.24 4.81 -26.73 -0.13 -1.37 16 10 C 0.12 1.31 6.21 -4.04 -0.03 1.29 16 11 N -0.30 -5.13 3.44 -61.26 -0.21 -5.34 16 12 C -0.08 -1.56 11.49 -17.05 -0.20 -1.76 16 13 C 0.03 0.79 6.44 -82.78 -0.53 0.25 16 14 C 0.09 2.46 5.55 -29.04 -0.16 2.30 16 15 C -0.50 -14.75 9.09 -34.44 -0.31 -15.06 16 16 H 0.06 1.75 7.74 -52.49 -0.41 1.34 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 18 N -0.90 -26.95 13.29 55.43 0.74 -26.22 16 19 Si 0.90 22.36 29.54 -169.99 -5.02 17.34 16 20 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 23 N -0.26 -6.43 12.40 33.29 0.41 -6.02 16 24 N -0.11 -2.27 12.91 60.35 0.78 -1.49 16 25 C -0.11 -0.78 4.73 -26.73 -0.13 -0.91 16 26 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.38 4.81 -51.93 -0.25 0.13 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.39 6.43 -51.93 -0.33 0.05 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.40 6.56 -51.93 -0.34 0.06 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.08 0.92 8.12 -51.93 -0.42 0.50 16 37 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.10 0.84 6.49 -51.93 -0.34 0.50 16 39 H 0.18 2.65 8.06 -52.49 -0.42 2.23 16 40 H 0.04 1.08 8.14 -51.92 -0.42 0.66 16 41 H 0.04 0.94 8.12 -51.93 -0.42 0.52 16 42 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 43 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 LS Contribution 345.12 15.07 5.20 5.20 Total: -1.00 -33.07 345.12 -7.74 -40.81 By element: Atomic # 1 Polarization: 1.84 SS G_CDS: -7.48 Total: -5.64 kcal Atomic # 6 Polarization: -16.49 SS G_CDS: -2.16 Total: -18.65 kcal Atomic # 7 Polarization: -40.78 SS G_CDS: 1.72 Total: -39.06 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.07 -7.74 -40.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603245726.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.720 kcal (2) G-P(sol) polarization free energy of solvation -33.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds