Wall clock time and date at job start Mon Mar 30 2020 01:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.46831 * 2 1 4 4 C 1.52998 * 109.47368 * 119.99675 * 2 1 3 5 5 C 1.53004 * 109.46999 * 60.00084 * 4 2 1 6 6 C 1.52994 * 109.46990 * 60.00001 * 5 4 2 7 7 C 1.52998 * 109.47249 * 299.99846 * 6 5 4 8 8 H 1.08997 * 109.47259 * 300.00192 * 7 6 5 9 9 C 1.53004 * 109.47144 * 180.02562 * 7 6 5 10 10 C 1.52999 * 109.47081 * 65.00238 * 9 7 6 11 11 N 1.46497 * 109.46990 * 180.02562 * 10 9 7 12 12 C 1.35317 * 125.87010 * 125.00098 * 11 10 9 13 13 C 1.35348 * 106.17735 * 180.24864 * 12 11 10 14 14 C 1.50695 * 126.75026 * 179.78015 * 13 12 11 15 15 C 1.50705 * 109.47409 * 124.99927 * 14 13 12 16 16 H 1.07996 * 119.99541 * 359.97438 * 15 14 13 17 17 C 1.37875 * 119.99797 * 180.02562 * 15 14 13 18 18 N 1.31508 * 120.00511 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 119.99618 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47381 * 59.99732 * 19 17 15 21 21 H 1.48506 * 109.47245 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47428 * 299.99787 * 19 17 15 23 23 N 1.33774 * 106.49647 * 359.63857 * 13 12 11 24 24 N 1.28636 * 108.88665 * 0.37294 * 23 13 12 25 25 C 1.52994 * 109.47134 * 239.99988 * 2 1 3 26 26 H 1.09003 * 109.47127 * 300.00000 * 1 2 3 27 27 H 1.09004 * 109.47491 * 60.00111 * 1 2 3 28 28 H 1.09000 * 109.47155 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47262 * 300.00243 * 4 2 1 30 30 H 1.08997 * 109.47259 * 180.02562 * 4 2 1 31 31 H 1.08997 * 109.47088 * 300.00071 * 5 4 2 32 32 H 1.08995 * 109.46740 * 180.02562 * 5 4 2 33 33 H 1.09005 * 109.47271 * 179.97438 * 6 5 4 34 34 H 1.08997 * 109.47147 * 60.00107 * 6 5 4 35 35 H 1.09005 * 109.46933 * 304.99850 * 9 7 6 36 36 H 1.09005 * 109.47324 * 185.00232 * 9 7 6 37 37 H 1.09000 * 109.46989 * 60.00395 * 10 9 7 38 38 H 1.08996 * 109.46805 * 299.99405 * 10 9 7 39 39 H 1.08002 * 126.90702 * 359.97438 * 12 11 10 40 40 H 1.09009 * 109.46604 * 244.99136 * 14 13 12 41 41 H 1.08993 * 109.47327 * 4.99084 * 14 13 12 42 42 H 0.96998 * 120.00536 * 180.02562 * 18 17 15 43 43 H 1.08997 * 109.47147 * 179.97438 * 25 2 1 44 44 H 1.09003 * 109.47563 * 60.00134 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.5301 -2.1637 1.2493 6 6 2.0401 -2.8849 0.0001 7 6 1.5300 -2.1638 -1.2491 8 1 0.4400 -2.1638 -1.2491 9 6 2.0395 -2.8854 -2.4984 10 6 1.4289 -4.2869 -2.5624 11 7 1.9173 -4.9780 -3.7582 12 6 2.5347 -6.1819 -3.7816 13 6 2.8176 -6.4354 -5.0807 14 6 3.5106 -7.6551 -5.6312 15 6 2.6453 -8.2900 -6.6892 16 1 1.6890 -7.8541 -6.9378 17 6 3.0742 -9.4279 -7.3390 18 7 4.2384 -9.9590 -7.0359 19 14 2.0013 -10.2152 -8.6499 20 1 1.7662 -9.2425 -9.7471 21 1 2.6843 -11.4171 -9.1924 22 1 0.7007 -10.6117 -8.0528 23 7 2.3582 -5.3918 -5.7802 24 7 1.8331 -4.5443 -4.9673 25 6 2.0400 -0.7212 -1.2492 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.6767 -0.2073 2.1392 30 1 3.1300 -0.7207 1.2495 31 1 0.4401 -2.1637 1.2493 32 1 1.8931 -2.6773 2.1395 33 1 1.6771 -3.9128 0.0003 34 1 3.1300 -2.8849 0.0001 35 1 3.1258 -2.9639 -2.4549 36 1 1.7511 -2.3226 -3.3862 37 1 0.3427 -4.2082 -2.6059 38 1 1.7174 -4.8497 -1.6747 39 1 2.7607 -6.8115 -2.9337 40 1 4.4653 -7.3638 -6.0693 41 1 3.6832 -8.3693 -4.8261 42 1 4.5403 -10.7593 -7.4933 43 1 3.1299 -0.7208 -1.2494 44 1 1.6767 -0.2074 -2.1392 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603245726.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:06 Heat of formation + Delta-G solvation = 36.069034 kcal Electronic energy + Delta-G solvation = -21132.565201 eV Core-core repulsion = 18084.636776 eV Total energy + Delta-G solvation = -3047.928425 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -44.01886 -40.31816 -36.73882 -35.40551 -33.81067 -32.82194 -32.33455 -29.89675 -29.03196 -27.58241 -25.61352 -25.27814 -23.23023 -22.60621 -22.08706 -21.21358 -19.48657 -18.52958 -17.99247 -17.19377 -16.58750 -16.38922 -15.94207 -15.55610 -15.24250 -15.05171 -14.74460 -14.54789 -14.24569 -13.87248 -13.69874 -13.51597 -13.32734 -12.98869 -12.75676 -12.63547 -12.57411 -12.43177 -12.35163 -12.18809 -11.87203 -11.83670 -11.69594 -11.62813 -11.37823 -11.10360 -10.91957 -10.79291 -10.67109 -10.57316 -9.84217 -8.18335 -6.27112 0.79093 1.40225 1.44008 1.51623 1.62871 1.78410 2.44846 3.14264 3.48644 3.64080 3.75166 3.80342 3.91578 3.98901 4.18761 4.28376 4.32904 4.39833 4.46021 4.50553 4.52871 4.56363 4.63694 4.72023 4.76310 4.86660 4.89999 5.01960 5.05750 5.13850 5.16919 5.21457 5.30675 5.33708 5.35730 5.42645 5.46947 5.49465 5.53711 5.55351 5.69956 5.77080 5.88849 6.23220 6.80917 7.39394 7.74031 8.92462 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.048113 B = 0.002722 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.818800 B =10282.921753 C =10484.843963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.090 4.090 3 H 0.067 0.933 4 C -0.115 4.115 5 C -0.120 4.120 6 C -0.120 4.120 7 C -0.074 4.074 8 H 0.086 0.914 9 C -0.119 4.119 10 C 0.108 3.892 11 N -0.283 5.283 12 C -0.054 4.054 13 C -0.010 4.010 14 C 0.103 3.897 15 C -0.525 4.525 16 H 0.044 0.956 17 C 0.008 3.992 18 N -0.927 5.927 19 Si 0.962 3.038 20 H -0.276 1.276 21 H -0.275 1.275 22 H -0.268 1.268 23 N -0.312 5.312 24 N -0.119 5.119 25 C -0.110 4.110 26 H 0.056 0.944 27 H 0.050 0.950 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.109 0.891 38 H 0.135 0.865 39 H 0.224 0.776 40 H 0.007 0.993 41 H 0.034 0.966 42 H 0.266 0.734 43 H 0.056 0.944 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.824 18.066 22.071 29.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.109 4.109 3 H 0.086 0.914 4 C -0.152 4.152 5 C -0.157 4.157 6 C -0.157 4.157 7 C -0.093 4.093 8 H 0.104 0.896 9 C -0.158 4.158 10 C -0.011 4.011 11 N -0.079 5.079 12 C -0.204 4.204 13 C -0.148 4.148 14 C 0.064 3.936 15 C -0.563 4.563 16 H 0.062 0.938 17 C -0.190 4.190 18 N -0.567 5.567 19 Si 0.786 3.214 20 H -0.202 1.202 21 H -0.200 1.200 22 H -0.193 1.193 23 N -0.179 5.179 24 N -0.098 5.098 25 C -0.147 4.147 26 H 0.075 0.925 27 H 0.069 0.931 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.127 0.873 38 H 0.153 0.847 39 H 0.240 0.760 40 H 0.025 0.975 41 H 0.052 0.948 42 H 0.075 0.925 43 H 0.075 0.925 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.218 19.106 21.149 29.401 hybrid contribution 0.209 -1.255 -0.323 1.312 sum -7.009 17.851 20.827 28.311 Atomic orbital electron populations 1.21945 0.94939 1.02355 1.01566 1.21074 0.96241 0.98939 0.94604 0.91450 1.21568 1.00333 0.95955 0.97371 1.21556 1.01289 0.95316 0.97535 1.21703 1.00835 0.99388 0.93778 1.21077 1.01187 0.94474 0.92567 0.89572 1.21855 1.00686 0.93424 0.99818 1.22619 1.01344 0.94504 0.82629 1.47657 1.37927 1.14070 1.08250 1.23773 1.05085 0.91073 1.00485 1.22675 1.03106 0.97610 0.91419 1.17374 0.93597 0.87190 0.95434 1.21255 1.04109 1.10071 1.20874 0.93789 1.25796 0.96556 0.97413 0.99247 1.70027 1.20782 1.22280 1.43635 0.85558 0.78956 0.77752 0.79102 1.20161 1.20007 1.19287 1.74980 1.13565 1.02552 1.26764 1.78028 1.21300 1.22490 0.88005 1.21582 1.00359 0.94864 0.97914 0.92454 0.93129 0.91701 0.91636 0.92464 0.91176 0.91608 0.90722 0.92273 0.92063 0.91873 0.87290 0.84689 0.75981 0.97537 0.94764 0.92465 0.92497 0.92393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 8.50 71.98 0.61 -0.93 16 2 C -0.09 -1.00 3.19 -10.80 -0.03 -1.04 16 3 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 4 C -0.11 -1.16 5.45 30.60 0.17 -1.00 16 5 C -0.12 -1.13 5.65 30.59 0.17 -0.95 16 6 C -0.12 -1.25 4.96 30.59 0.15 -1.10 16 7 C -0.07 -0.91 1.91 -10.79 -0.02 -0.94 16 8 H 0.09 0.96 6.43 -2.39 -0.02 0.94 16 9 C -0.12 -2.11 4.81 30.60 0.15 -1.96 16 10 C 0.11 2.00 6.21 86.38 0.54 2.54 16 11 N -0.28 -9.02 3.44 -347.74 -1.20 -10.22 16 12 C -0.05 -1.90 11.49 83.49 0.96 -0.94 16 13 C -0.01 -0.46 6.44 41.59 0.27 -0.20 16 14 C 0.10 5.65 5.55 29.10 0.16 5.81 16 15 C -0.52 -31.50 9.09 25.60 0.23 -31.27 16 16 H 0.04 2.70 7.74 -2.91 -0.02 2.68 16 17 C 0.01 0.47 5.46 84.66 0.46 0.94 16 18 N -0.93 -56.17 13.29 21.45 0.28 -55.89 16 19 Si 0.96 46.05 29.54 68.60 2.03 48.07 16 20 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 21 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 22 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 23 N -0.31 -15.57 12.40 -48.60 -0.60 -16.18 16 24 N -0.12 -4.93 12.91 37.02 0.48 -4.45 16 25 C -0.11 -1.45 4.73 30.59 0.14 -1.30 16 26 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.05 0.55 8.14 -2.38 -0.02 0.53 16 28 H 0.06 0.63 4.81 -2.39 -0.01 0.62 16 29 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.07 0.61 6.43 -2.39 -0.02 0.60 16 32 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.07 0.63 6.56 -2.38 -0.02 0.62 16 34 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 36 H 0.06 1.37 8.12 -2.38 -0.02 1.36 16 37 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.14 1.62 6.49 -2.39 -0.02 1.60 16 39 H 0.22 5.69 8.06 -2.91 -0.02 5.67 16 40 H 0.01 0.39 8.14 -2.38 -0.02 0.37 16 41 H 0.03 1.84 8.12 -2.39 -0.02 1.82 16 42 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 43 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -73.46 345.12 5.91 -67.55 By element: Atomic # 1 Polarization: 2.49 SS G_CDS: 0.96 Total: 3.45 kcal Atomic # 6 Polarization: -36.30 SS G_CDS: 3.96 Total: -32.34 kcal Atomic # 7 Polarization: -85.69 SS G_CDS: -1.04 Total: -86.73 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.07 kcal Total: -73.46 5.91 -67.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603245726.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.615 kcal (2) G-P(sol) polarization free energy of solvation -73.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds