Wall clock time and date at job start Mon Mar 30 2020 02:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34953 * 126.03580 * 2 1 4 4 C 1.35318 * 107.74468 * 180.14577 * 3 2 1 5 5 C 1.50701 * 126.03970 * 179.87557 * 4 3 2 6 6 C 1.53000 * 109.46866 * 269.71545 * 5 4 3 7 7 C 1.52998 * 109.46876 * 179.97438 * 6 5 4 8 8 N 1.46902 * 109.47078 * 179.97438 * 7 6 5 9 9 C 1.46900 * 110.99937 * 189.99964 * 8 7 6 10 10 C 1.50696 * 109.47342 * 75.57068 * 9 8 7 11 11 H 1.08007 * 119.99940 * 355.71177 * 10 9 8 12 12 C 1.37869 * 120.00451 * 175.71361 * 10 9 8 13 13 N 1.31515 * 120.00219 * 359.97438 * 12 10 9 14 14 Si 1.86805 * 120.00372 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47071 * 59.99744 * 14 12 10 16 16 H 1.48502 * 109.47184 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.46872 * 300.00239 * 14 12 10 18 18 C 1.46901 * 110.99878 * 66.04902 * 8 7 6 19 19 C 1.52998 * 109.47137 * 195.54235 * 18 8 7 20 20 C 1.52997 * 117.49725 * 244.14043 * 19 18 8 21 21 C 1.52999 * 60.00110 * 252.51196 * 20 19 18 22 22 C 1.39870 * 107.91972 * 359.60818 * 4 3 2 23 23 N 1.30837 * 108.20261 * 0.24096 * 22 4 3 24 24 H 1.09002 * 109.47534 * 270.25868 * 1 2 3 25 25 H 1.09000 * 109.47246 * 30.26562 * 1 2 3 26 26 H 1.09002 * 109.47135 * 150.26265 * 1 2 3 27 27 H 1.07999 * 126.12801 * 0.02562 * 3 2 1 28 28 H 1.08995 * 109.47270 * 149.71053 * 5 4 3 29 29 H 1.09004 * 109.46733 * 29.71332 * 5 4 3 30 30 H 1.08999 * 109.47391 * 60.00173 * 6 5 4 31 31 H 1.09003 * 109.46789 * 299.99671 * 6 5 4 32 32 H 1.09003 * 109.47571 * 299.99961 * 7 6 5 33 33 H 1.09008 * 109.47019 * 59.99841 * 7 6 5 34 34 H 1.08998 * 109.46899 * 195.56762 * 9 8 7 35 35 H 1.08997 * 109.47289 * 315.56641 * 9 8 7 36 36 H 0.96996 * 120.00839 * 179.97438 * 13 12 10 37 37 H 1.09004 * 109.46844 * 315.54218 * 18 8 7 38 38 H 1.08997 * 109.47325 * 75.53759 * 18 8 7 39 39 H 1.08994 * 115.54832 * 29.85077 * 19 18 8 40 40 H 1.09002 * 117.50119 * 359.97438 * 20 19 18 41 41 H 1.09001 * 117.50072 * 145.02539 * 20 19 18 42 42 H 1.09001 * 117.49951 * 252.51530 * 21 20 19 43 43 H 1.09001 * 117.50276 * 107.48933 * 21 20 19 44 44 H 1.08004 * 125.89707 * 180.26036 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6666 -0.0033 5 6 4.7680 1.5454 -0.0071 6 6 5.1825 1.8361 -1.4509 7 6 6.4250 2.7287 -1.4548 8 7 6.8234 3.0074 -2.8411 9 6 8.1390 3.6591 -2.8899 10 6 9.2155 2.6380 -2.6263 11 1 8.9468 1.6231 -2.3728 12 6 10.5435 2.9992 -2.7087 13 7 10.8709 4.2349 -3.0179 14 14 11.8779 1.7336 -2.3812 15 1 11.7492 0.6164 -3.3510 16 1 13.2113 2.3698 -2.5322 17 1 11.7339 1.2088 -0.9996 18 6 5.8087 3.8179 -3.5276 19 6 6.0497 3.7650 -5.0376 20 6 6.4206 5.0727 -5.7400 21 6 5.0312 4.4640 -5.9404 22 6 3.5346 -0.7320 0.0037 23 7 2.2891 -1.1327 0.0058 24 1 -0.3634 0.0046 1.0276 25 1 -0.3634 0.8876 -0.5179 26 1 -0.3633 -0.8923 -0.5098 27 1 1.9281 2.1194 0.0004 28 1 5.5820 1.0367 0.5092 29 1 4.5440 2.4826 0.5024 30 1 4.3684 2.3449 -1.9673 31 1 5.4064 0.8988 -1.9604 32 1 6.2008 3.6660 -0.9455 33 1 7.2393 2.2203 -0.9383 34 1 8.2898 4.0998 -3.8753 35 1 8.1858 4.4404 -2.1314 36 1 11.8051 4.4892 -3.0755 37 1 4.8171 3.4244 -3.3039 38 1 5.8756 4.8505 -3.1849 39 1 6.5050 2.8471 -5.4090 40 1 6.4925 5.9707 -5.1264 41 1 7.1202 5.0152 -6.5738 42 1 4.8169 4.0061 -6.9060 43 1 4.1895 4.9615 -5.4586 44 1 4.4054 -1.3709 0.0073 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610485264.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:34 Heat of formation + Delta-G solvation = 96.427234 kcal Electronic energy + Delta-G solvation = -21097.429481 eV Core-core repulsion = 18052.118384 eV Total energy + Delta-G solvation = -3045.311097 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.18634 -37.87836 -35.86729 -34.16629 -32.82093 -32.14867 -29.70494 -27.61484 -27.33778 -25.45584 -23.84964 -21.98282 -21.53767 -21.11404 -20.51232 -19.97476 -19.40516 -16.83691 -16.30045 -15.55883 -15.42332 -14.78704 -14.59804 -14.35840 -14.29999 -13.75953 -13.47163 -13.34495 -12.91955 -12.78110 -12.69170 -12.20646 -11.93999 -11.81758 -11.42702 -11.14477 -11.09199 -10.95959 -10.74932 -10.63085 -10.56016 -10.24134 -10.10892 -9.82721 -9.78993 -9.44969 -9.26279 -9.06553 -8.35866 -8.28332 -7.15575 -5.94472 -3.95021 1.84979 2.46644 2.82734 3.38416 3.42153 3.45515 4.26217 4.40332 4.49082 4.78293 4.87604 4.89581 5.06022 5.14492 5.24861 5.31572 5.39311 5.40955 5.43776 5.56848 5.75094 5.79830 5.90672 5.94159 5.99278 6.05535 6.15133 6.21964 6.26689 6.32011 6.37198 6.48360 6.51782 6.66248 6.77606 6.84723 6.90204 6.97402 7.38431 7.45651 7.66848 7.90499 8.22435 8.33657 8.64981 9.12767 9.68543 11.16074 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.014021 B = 0.004083 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.584711 B = 6856.007955 C = 8450.676289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.383 5.383 3 C 0.048 3.952 4 C -0.221 4.221 5 C -0.042 4.042 6 C -0.108 4.108 7 C 0.063 3.937 8 N -0.534 5.534 9 C 0.193 3.807 10 C -0.502 4.502 11 H 0.062 0.938 12 C 0.054 3.946 13 N -0.901 5.901 14 Si 0.895 3.105 15 H -0.277 1.277 16 H -0.289 1.289 17 H -0.277 1.277 18 C 0.084 3.916 19 C -0.127 4.127 20 C -0.178 4.178 21 C -0.191 4.191 22 C 0.054 3.946 23 N -0.304 5.304 24 H 0.071 0.929 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.170 0.830 28 H 0.071 0.929 29 H 0.063 0.937 30 H 0.053 0.947 31 H 0.068 0.932 32 H 0.016 0.984 33 H 0.081 0.919 34 H 0.038 0.962 35 H -0.015 1.015 36 H 0.260 0.740 37 H 0.065 0.935 38 H 0.021 0.979 39 H 0.111 0.889 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.087 0.913 43 H 0.085 0.915 44 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.998 -3.062 3.783 19.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.166 5.166 3 C -0.097 4.097 4 C -0.233 4.233 5 C -0.081 4.081 6 C -0.146 4.146 7 C -0.065 4.065 8 N -0.258 5.258 9 C 0.068 3.932 10 C -0.540 4.540 11 H 0.080 0.920 12 C -0.146 4.146 13 N -0.541 5.541 14 Si 0.723 3.277 15 H -0.202 1.202 16 H -0.215 1.215 17 H -0.203 1.203 18 C -0.044 4.044 19 C -0.146 4.146 20 C -0.215 4.215 21 C -0.229 4.229 22 C -0.132 4.132 23 N -0.125 5.125 24 H 0.089 0.911 25 H 0.103 0.897 26 H 0.105 0.895 27 H 0.188 0.812 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.034 0.966 33 H 0.099 0.901 34 H 0.056 0.944 35 H 0.003 0.997 36 H 0.070 0.930 37 H 0.083 0.917 38 H 0.039 0.961 39 H 0.129 0.871 40 H 0.107 0.893 41 H 0.108 0.892 42 H 0.106 0.894 43 H 0.104 0.896 44 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -19.753 -4.392 3.514 20.538 hybrid contribution 1.267 0.993 0.493 1.683 sum -18.486 -3.399 4.007 19.218 Atomic orbital electron populations 1.21786 0.74633 1.04299 1.03028 1.48406 1.06406 1.03978 1.57801 1.22312 0.90999 0.93171 1.03238 1.20221 0.94678 0.94062 1.14300 1.19907 0.93231 0.97305 0.97637 1.21637 0.97288 1.00623 0.95040 1.21995 0.96932 0.97020 0.90550 1.62088 1.03426 1.46589 1.13708 1.19744 0.83426 0.93146 0.96890 1.21156 0.90067 0.96736 1.46082 0.92012 1.24972 0.98685 0.95304 0.95683 1.69948 1.17633 1.17186 1.49301 0.86608 0.80757 0.81528 0.78781 1.20237 1.21504 1.20315 1.21623 0.95900 0.95162 0.91737 1.22264 1.01686 0.96842 0.93781 1.22952 0.97355 0.97745 1.03493 1.22928 0.93171 1.05546 1.01223 1.23861 0.95036 0.94865 0.99466 1.77312 1.01871 1.08322 1.25001 0.91076 0.89660 0.89510 0.81237 0.90987 0.91868 0.92854 0.91362 0.96604 0.90071 0.94400 0.99704 0.93033 0.91720 0.96094 0.87114 0.89299 0.89213 0.89443 0.89606 0.80011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.68 11.47 59.84 0.69 1.37 16 2 N -0.38 -4.30 4.01 -68.16 -0.27 -4.58 16 3 C 0.05 0.53 11.40 -17.22 -0.20 0.33 16 4 C -0.22 -2.76 5.35 -105.05 -0.56 -3.32 16 5 C -0.04 -0.53 5.70 -27.88 -0.16 -0.68 16 6 C -0.11 -1.61 5.16 -26.73 -0.14 -1.75 16 7 C 0.06 1.18 4.78 -3.82 -0.02 1.16 16 8 N -0.53 -11.38 4.38 -236.07 -1.04 -12.42 16 9 C 0.19 5.01 4.59 -4.98 -0.02 4.99 16 10 C -0.50 -14.11 8.60 -34.44 -0.30 -14.41 16 11 H 0.06 1.72 7.66 -52.48 -0.40 1.32 16 12 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 13 N -0.90 -26.91 13.29 55.43 0.74 -26.18 16 14 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 15 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 16 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 C 0.08 1.54 5.11 -3.82 -0.02 1.52 16 19 C -0.13 -2.23 4.96 -90.62 -0.45 -2.68 16 20 C -0.18 -2.93 9.97 -26.73 -0.27 -3.20 16 21 C -0.19 -2.71 10.25 -26.73 -0.27 -2.99 16 22 C 0.05 0.70 11.96 -17.36 -0.21 0.49 16 23 N -0.30 -4.16 12.58 30.63 0.39 -3.77 16 24 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.17 1.35 8.06 -52.49 -0.42 0.92 16 28 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.05 0.77 6.29 -51.93 -0.33 0.45 16 31 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.02 0.29 8.12 -51.93 -0.42 -0.13 16 33 H 0.08 1.65 7.32 -51.92 -0.38 1.27 16 34 H 0.04 1.05 6.93 -51.93 -0.36 0.69 16 35 H -0.01 -0.41 8.00 -51.93 -0.42 -0.83 16 36 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 37 H 0.06 1.05 5.95 -51.93 -0.31 0.74 16 38 H 0.02 0.39 7.79 -51.93 -0.40 -0.01 16 39 H 0.11 2.13 8.14 -51.93 -0.42 1.70 16 40 H 0.09 1.47 8.03 -51.93 -0.42 1.05 16 41 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 42 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 44 H 0.18 1.98 8.06 -52.48 -0.42 1.56 16 LS Contribution 361.83 15.07 5.45 5.45 Total: -1.00 -32.40 361.83 -9.42 -41.82 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -7.64 Total: 0.61 kcal Atomic # 6 Polarization: -15.70 SS G_CDS: -2.02 Total: -17.72 kcal Atomic # 7 Polarization: -46.76 SS G_CDS: -0.19 Total: -46.94 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.40 -9.42 -41.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610485264.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.247 kcal (2) G-P(sol) polarization free energy of solvation -32.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds