Wall clock time and date at job start Mon Mar 30 2020 02:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34953 * 126.03580 * 2 1 4 4 C 1.35318 * 107.74468 * 180.14577 * 3 2 1 5 5 C 1.50701 * 126.03970 * 179.87557 * 4 3 2 6 6 C 1.53000 * 109.46866 * 269.71545 * 5 4 3 7 7 C 1.52998 * 109.46876 * 179.97438 * 6 5 4 8 8 N 1.46902 * 109.47078 * 179.97438 * 7 6 5 9 9 C 1.46900 * 110.99937 * 189.99964 * 8 7 6 10 10 C 1.50696 * 109.47342 * 75.57068 * 9 8 7 11 11 H 1.08007 * 119.99940 * 355.71177 * 10 9 8 12 12 C 1.37869 * 120.00451 * 175.71361 * 10 9 8 13 13 N 1.31515 * 120.00219 * 359.97438 * 12 10 9 14 14 Si 1.86805 * 120.00372 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47071 * 59.99744 * 14 12 10 16 16 H 1.48502 * 109.47184 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.46872 * 300.00239 * 14 12 10 18 18 C 1.46901 * 110.99878 * 66.04902 * 8 7 6 19 19 C 1.52998 * 109.47137 * 195.54235 * 18 8 7 20 20 C 1.52997 * 117.49725 * 244.14043 * 19 18 8 21 21 C 1.52999 * 60.00110 * 252.51196 * 20 19 18 22 22 C 1.39870 * 107.91972 * 359.60818 * 4 3 2 23 23 N 1.30837 * 108.20261 * 0.24096 * 22 4 3 24 24 H 1.09002 * 109.47534 * 270.25868 * 1 2 3 25 25 H 1.09000 * 109.47246 * 30.26562 * 1 2 3 26 26 H 1.09002 * 109.47135 * 150.26265 * 1 2 3 27 27 H 1.07999 * 126.12801 * 0.02562 * 3 2 1 28 28 H 1.08995 * 109.47270 * 149.71053 * 5 4 3 29 29 H 1.09004 * 109.46733 * 29.71332 * 5 4 3 30 30 H 1.08999 * 109.47391 * 60.00173 * 6 5 4 31 31 H 1.09003 * 109.46789 * 299.99671 * 6 5 4 32 32 H 1.09003 * 109.47571 * 299.99961 * 7 6 5 33 33 H 1.09008 * 109.47019 * 59.99841 * 7 6 5 34 34 H 1.08998 * 109.46899 * 195.56762 * 9 8 7 35 35 H 1.08997 * 109.47289 * 315.56641 * 9 8 7 36 36 H 0.96996 * 120.00839 * 179.97438 * 13 12 10 37 37 H 1.09004 * 109.46844 * 315.54218 * 18 8 7 38 38 H 1.08997 * 109.47325 * 75.53759 * 18 8 7 39 39 H 1.08994 * 115.54832 * 29.85077 * 19 18 8 40 40 H 1.09002 * 117.50119 * 359.97438 * 20 19 18 41 41 H 1.09001 * 117.50072 * 145.02539 * 20 19 18 42 42 H 1.09001 * 117.49951 * 252.51530 * 21 20 19 43 43 H 1.09001 * 117.50276 * 107.48933 * 21 20 19 44 44 H 1.08004 * 125.89707 * 180.26036 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6666 -0.0033 5 6 4.7680 1.5454 -0.0071 6 6 5.1825 1.8361 -1.4509 7 6 6.4250 2.7287 -1.4548 8 7 6.8234 3.0074 -2.8411 9 6 8.1390 3.6591 -2.8899 10 6 9.2155 2.6380 -2.6263 11 1 8.9468 1.6231 -2.3728 12 6 10.5435 2.9992 -2.7087 13 7 10.8709 4.2349 -3.0179 14 14 11.8779 1.7336 -2.3812 15 1 11.7492 0.6164 -3.3510 16 1 13.2113 2.3698 -2.5322 17 1 11.7339 1.2088 -0.9996 18 6 5.8087 3.8179 -3.5276 19 6 6.0497 3.7650 -5.0376 20 6 6.4206 5.0727 -5.7400 21 6 5.0312 4.4640 -5.9404 22 6 3.5346 -0.7320 0.0037 23 7 2.2891 -1.1327 0.0058 24 1 -0.3634 0.0046 1.0276 25 1 -0.3634 0.8876 -0.5179 26 1 -0.3633 -0.8923 -0.5098 27 1 1.9281 2.1194 0.0004 28 1 5.5820 1.0367 0.5092 29 1 4.5440 2.4826 0.5024 30 1 4.3684 2.3449 -1.9673 31 1 5.4064 0.8988 -1.9604 32 1 6.2008 3.6660 -0.9455 33 1 7.2393 2.2203 -0.9383 34 1 8.2898 4.0998 -3.8753 35 1 8.1858 4.4404 -2.1314 36 1 11.8051 4.4892 -3.0755 37 1 4.8171 3.4244 -3.3039 38 1 5.8756 4.8505 -3.1849 39 1 6.5050 2.8471 -5.4090 40 1 6.4925 5.9707 -5.1264 41 1 7.1202 5.0152 -6.5738 42 1 4.8169 4.0061 -6.9060 43 1 4.1895 4.9615 -5.4586 44 1 4.4054 -1.3709 0.0073 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610485264.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:33 Heat of formation + Delta-G solvation = 77.304143 kcal Electronic energy + Delta-G solvation = -21098.258721 eV Core-core repulsion = 18052.118384 eV Total energy + Delta-G solvation = -3046.140337 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.04877 -39.38791 -37.23963 -35.43202 -34.46502 -33.42756 -30.82058 -29.48127 -28.28288 -26.76187 -25.43469 -23.26993 -23.09474 -21.94809 -21.92427 -20.94851 -20.89408 -18.48135 -17.63162 -16.98149 -16.48970 -16.26659 -16.08135 -15.69256 -15.30814 -15.21152 -14.82442 -14.48625 -14.09702 -13.83200 -13.78770 -13.60395 -13.25728 -13.22343 -12.77560 -12.74360 -12.54235 -12.41553 -12.33537 -12.20532 -12.12601 -11.76057 -11.44472 -11.36979 -11.26402 -11.03122 -10.59855 -10.50891 -10.30519 -9.20368 -8.91879 -8.14291 -6.23649 1.00571 1.42455 1.45584 1.53247 1.76809 1.88945 2.43723 2.96344 3.16880 3.35799 3.72114 3.97398 4.04289 4.08640 4.15287 4.24094 4.36221 4.42415 4.46980 4.55404 4.58392 4.62986 4.71628 4.74108 4.79923 4.84183 4.86813 5.00272 5.03342 5.06025 5.09326 5.15355 5.27479 5.29144 5.37475 5.45907 5.55528 5.58628 5.72782 5.77142 6.15994 6.22419 6.50893 6.74931 6.78558 6.92741 7.45408 8.95792 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.014021 B = 0.004083 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.584711 B = 6856.007955 C = 8450.676289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.384 5.384 3 C 0.058 3.942 4 C -0.244 4.244 5 C -0.030 4.030 6 C -0.089 4.089 7 C 0.065 3.935 8 N -0.543 5.543 9 C 0.212 3.788 10 C -0.518 4.518 11 H 0.059 0.941 12 C 0.002 3.998 13 N -0.935 5.935 14 Si 0.964 3.036 15 H -0.270 1.270 16 H -0.284 1.284 17 H -0.267 1.267 18 C 0.088 3.912 19 C -0.155 4.155 20 C -0.194 4.194 21 C -0.149 4.149 22 C 0.039 3.961 23 N -0.338 5.338 24 H 0.085 0.915 25 H 0.114 0.886 26 H 0.087 0.913 27 H 0.204 0.796 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.065 0.935 31 H 0.053 0.947 32 H 0.019 0.981 33 H 0.056 0.944 34 H 0.012 0.988 35 H -0.046 1.046 36 H 0.263 0.737 37 H 0.091 0.909 38 H 0.014 0.986 39 H 0.088 0.912 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.107 0.893 43 H 0.108 0.892 44 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.099 -3.308 3.912 21.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.166 5.166 3 C -0.088 4.088 4 C -0.255 4.255 5 C -0.070 4.070 6 C -0.127 4.127 7 C -0.063 4.063 8 N -0.267 5.267 9 C 0.086 3.914 10 C -0.556 4.556 11 H 0.077 0.923 12 C -0.196 4.196 13 N -0.576 5.576 14 Si 0.789 3.211 15 H -0.195 1.195 16 H -0.209 1.209 17 H -0.192 1.192 18 C -0.039 4.039 19 C -0.174 4.174 20 C -0.231 4.231 21 C -0.186 4.186 22 C -0.146 4.146 23 N -0.161 5.161 24 H 0.104 0.896 25 H 0.132 0.868 26 H 0.106 0.894 27 H 0.221 0.779 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.037 0.963 33 H 0.075 0.925 34 H 0.031 0.969 35 H -0.029 1.029 36 H 0.071 0.929 37 H 0.110 0.890 38 H 0.032 0.968 39 H 0.107 0.893 40 H 0.101 0.899 41 H 0.104 0.896 42 H 0.126 0.874 43 H 0.126 0.874 44 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -21.892 -4.659 3.647 22.678 hybrid contribution 1.827 1.108 0.448 2.183 sum -20.065 -3.552 4.095 20.785 Atomic orbital electron populations 1.22162 0.72162 1.05796 1.04492 1.48800 1.07879 1.03416 1.56537 1.22824 0.90455 0.94463 1.01066 1.20223 0.95230 0.93745 1.16319 1.19748 0.93440 0.98028 0.95747 1.21459 0.95466 0.98888 0.96927 1.22020 0.97826 0.97647 0.88849 1.62034 1.02480 1.46564 1.15621 1.19338 0.85931 0.91975 0.94199 1.21469 0.91131 0.96969 1.46077 0.92266 1.25860 1.01142 0.97333 0.95256 1.70079 1.18231 1.19152 1.50156 0.85516 0.77592 0.78892 0.79099 1.19543 1.20945 1.19196 1.21677 0.96000 0.94366 0.91903 1.22193 1.04867 0.96461 0.93854 1.22978 0.99759 0.96981 1.03391 1.23020 0.92124 1.02513 1.00947 1.24099 0.95316 0.95581 0.99579 1.77250 1.02428 1.10018 1.26364 0.89621 0.86804 0.89432 0.77916 0.91520 0.90518 0.91692 0.92853 0.96269 0.92512 0.96936 1.02856 0.92874 0.89046 0.96784 0.89333 0.89898 0.89574 0.87424 0.87379 0.79427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.96 11.47 127.77 1.47 2.43 16 2 N -0.38 -7.75 4.01 -369.56 -1.48 -9.23 16 3 C 0.06 1.11 11.40 83.54 0.95 2.06 16 4 C -0.24 -5.68 5.35 -20.14 -0.11 -5.79 16 5 C -0.03 -0.73 5.70 29.85 0.17 -0.56 16 6 C -0.09 -2.59 5.16 30.59 0.16 -2.43 16 7 C 0.06 2.43 4.78 86.30 0.41 2.84 16 8 N -0.54 -23.65 4.38 -900.79 -3.95 -27.60 16 9 C 0.21 11.49 4.59 85.56 0.39 11.88 16 10 C -0.52 -30.00 8.60 25.60 0.22 -29.78 16 11 H 0.06 3.38 7.66 -2.91 -0.02 3.36 16 12 C 0.00 0.10 5.46 84.65 0.46 0.56 16 13 N -0.94 -57.27 13.29 21.44 0.28 -56.99 16 14 Si 0.96 45.20 29.54 68.60 2.03 47.23 16 15 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 16 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 17 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 18 C 0.09 3.19 5.11 86.30 0.44 3.63 16 19 C -0.15 -5.41 4.96 -10.79 -0.05 -5.46 16 20 C -0.19 -6.35 9.97 30.59 0.30 -6.05 16 21 C -0.15 -3.84 10.25 30.59 0.31 -3.53 16 22 C 0.04 0.99 11.96 85.24 1.02 2.01 16 23 N -0.34 -8.95 12.58 -57.02 -0.72 -9.67 16 24 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 25 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 26 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.20 2.32 8.06 -2.91 -0.02 2.30 16 28 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 30 H 0.06 1.73 6.29 -2.39 -0.02 1.72 16 31 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.02 0.70 8.12 -2.39 -0.02 0.68 16 33 H 0.06 2.39 7.32 -2.38 -0.02 2.37 16 34 H 0.01 0.73 6.93 -2.39 -0.02 0.72 16 35 H -0.05 -2.73 8.00 -2.39 -0.02 -2.75 16 36 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 37 H 0.09 2.78 5.95 -2.38 -0.01 2.76 16 38 H 0.01 0.53 7.79 -2.39 -0.02 0.51 16 39 H 0.09 3.47 8.14 -2.39 -0.02 3.46 16 40 H 0.08 2.78 8.03 -2.39 -0.02 2.76 16 41 H 0.09 2.83 8.14 -2.39 -0.02 2.81 16 42 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 43 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 44 H 0.19 4.16 8.06 -2.91 -0.02 4.13 16 Total: -1.00 -72.03 361.83 3.26 -68.77 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: 0.95 Total: 15.67 kcal Atomic # 6 Polarization: -34.33 SS G_CDS: 6.15 Total: -28.18 kcal Atomic # 7 Polarization: -97.62 SS G_CDS: -5.87 Total: -103.49 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -72.03 3.26 -68.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610485264.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.071 kcal (2) G-P(sol) polarization free energy of solvation -72.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds