Wall clock time and date at job start Mon Mar 30 2020 01:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46506 * 119.99935 * 2 1 4 4 C 1.39195 * 120.00335 * 179.97438 * 2 1 3 5 5 C 1.39689 * 120.82751 * 174.60815 * 4 2 1 6 6 C 1.37731 * 119.23461 * 180.25834 * 5 4 2 7 7 N 1.32086 * 120.93402 * 359.73856 * 6 5 4 8 8 C 1.32519 * 121.80593 * 0.02562 * 7 6 5 9 9 N 1.39036 * 119.66692 * 180.02562 * 8 7 6 10 10 C 1.46502 * 119.99935 * 179.97438 * 9 8 7 11 11 C 1.52998 * 109.47029 * 179.97438 * 10 9 8 12 12 C 1.52998 * 109.47084 * 300.00030 * 11 10 9 13 13 C 1.52997 * 109.47236 * 60.00225 * 11 10 9 14 14 C 1.53003 * 109.47127 * 180.02562 * 11 10 9 15 15 C 1.50699 * 109.47145 * 180.02562 * 14 11 10 16 16 H 1.07991 * 120.00032 * 359.97438 * 15 14 11 17 17 C 1.37877 * 119.99939 * 180.02562 * 15 14 11 18 18 N 1.31507 * 120.00290 * 179.97438 * 17 15 14 19 19 Si 1.86801 * 119.99869 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.47098 * 90.00406 * 19 17 15 21 21 H 1.48510 * 109.47085 * 210.00152 * 19 17 15 22 22 H 1.48500 * 109.47364 * 330.00404 * 19 17 15 23 23 C 1.38823 * 120.66780 * 359.97438 * 8 7 6 24 24 H 1.08996 * 109.46965 * 185.05522 * 1 2 3 25 25 H 1.09005 * 109.47261 * 305.05644 * 1 2 3 26 26 H 1.08995 * 109.47232 * 65.05153 * 1 2 3 27 27 H 1.09000 * 109.46830 * 269.99677 * 3 2 1 28 28 H 1.08992 * 109.47215 * 30.00123 * 3 2 1 29 29 H 1.09004 * 109.47084 * 150.00191 * 3 2 1 30 30 H 1.08001 * 120.38689 * 0.02562 * 5 4 2 31 31 H 1.07996 * 119.53476 * 179.76626 * 6 5 4 32 32 H 0.97000 * 119.99960 * 359.97284 * 9 8 7 33 33 H 1.08997 * 109.47096 * 300.00239 * 10 9 8 34 34 H 1.09005 * 109.47037 * 59.99734 * 10 9 8 35 35 H 1.08996 * 109.46965 * 60.00262 * 12 11 10 36 36 H 1.09007 * 109.46888 * 179.97438 * 12 11 10 37 37 H 1.09000 * 109.47539 * 299.99757 * 12 11 10 38 38 H 1.09005 * 109.47115 * 59.99499 * 13 11 10 39 39 H 1.08998 * 109.47535 * 179.97438 * 13 11 10 40 40 H 1.08996 * 109.46933 * 300.00455 * 13 11 10 41 41 H 1.08997 * 109.46984 * 300.00539 * 14 11 10 42 42 H 1.09005 * 109.47051 * 59.99975 * 14 11 10 43 43 H 0.97000 * 120.00423 * 179.97438 * 18 17 15 44 44 H 1.08001 * 120.50178 * 179.97438 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1610 -1.2054 0.0005 5 6 3.5532 -1.2282 -0.1122 6 6 4.2082 -2.4398 -0.1134 7 7 3.5391 -3.5735 -0.0047 8 6 2.2190 -3.5973 0.1090 9 7 1.5598 -4.8163 0.2213 10 6 0.1007 -4.8510 0.3480 11 6 -0.3675 -6.3037 0.4539 12 6 0.0537 -7.0683 -0.8026 13 6 0.2668 -6.9556 1.6842 14 6 -1.8914 -6.3401 0.5856 15 6 -2.3526 -7.7710 0.6906 16 1 -1.6310 -8.5740 0.6655 17 6 -3.6958 -8.0548 0.8176 18 7 -4.0984 -9.3034 0.9088 19 14 -4.9440 -6.6656 0.8603 20 1 -5.3932 -6.3611 -0.5220 21 1 -6.1118 -7.0745 1.6815 22 1 -4.3193 -5.4569 1.4553 23 6 1.4877 -2.4173 0.1182 24 1 -0.3633 -1.0236 0.0906 25 1 -0.3634 0.5903 0.8413 26 1 -0.3633 0.4334 -0.9317 27 1 2.3792 1.5834 -1.0277 28 1 1.6084 2.0284 0.5138 29 1 3.1499 1.1384 0.5138 30 1 4.1092 -0.3066 -0.2011 31 1 5.2841 -2.4633 -0.2041 32 1 2.0660 -5.6437 0.2158 33 1 -0.1994 -4.3059 1.2429 34 1 -0.3512 -4.3870 -0.5287 35 1 1.1393 -7.0424 -0.8968 36 1 -0.2795 -8.1034 -0.7269 37 1 -0.3982 -6.6040 -1.6791 38 1 -0.0332 -6.4108 2.5794 39 1 -0.0671 -7.9904 1.7600 40 1 1.3524 -6.9296 1.5900 41 1 -2.1919 -5.7952 1.4805 42 1 -2.3430 -5.8758 -0.2912 43 1 -5.0433 -9.5031 0.9985 44 1 0.4119 -2.4398 0.2106 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000612198326.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:32 Heat of formation + Delta-G solvation = 21.503826 kcal Electronic energy + Delta-G solvation = -21627.817977 eV Core-core repulsion = 18579.257957 eV Total energy + Delta-G solvation = -3048.560020 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.19083 -39.29740 -37.81475 -35.60800 -34.18868 -31.96523 -30.98268 -29.63230 -28.80937 -28.01136 -27.20982 -26.13858 -24.50190 -22.99655 -21.96952 -19.72660 -18.89464 -18.67699 -17.73860 -16.74003 -16.29868 -16.14337 -15.92796 -15.77877 -15.69807 -15.14085 -14.82446 -14.79344 -14.69064 -14.18293 -14.08557 -13.90248 -13.38325 -13.16234 -12.96627 -12.92354 -12.81316 -12.67528 -12.30764 -12.20528 -12.01268 -11.75159 -11.63729 -11.45615 -11.18886 -10.91026 -10.78538 -10.69515 -10.23631 -8.63443 -8.47331 -8.20928 -6.22005 0.59839 0.84619 1.38059 1.39851 1.50347 2.14060 2.39747 2.40737 3.14386 3.18387 3.85115 3.91881 4.06121 4.09049 4.16702 4.28295 4.39761 4.43899 4.52083 4.57983 4.66733 4.71509 4.72309 4.75478 4.78012 4.89055 4.94623 4.94990 5.02455 5.07733 5.12199 5.25727 5.30288 5.37797 5.39909 5.53187 5.66897 5.67730 5.76945 6.10149 6.32735 6.40161 6.48539 6.77875 6.85506 7.40618 7.49269 8.95158 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.021879 B = 0.004049 C = 0.003506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.430347 B = 6912.784652 C = 7983.696414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.633 5.633 3 C 0.089 3.911 4 C 0.275 3.725 5 C -0.309 4.309 6 C 0.173 3.827 7 N -0.610 5.610 8 C 0.422 3.578 9 N -0.717 5.717 10 C 0.151 3.849 11 C -0.057 4.057 12 C -0.122 4.122 13 C -0.122 4.122 14 C 0.001 3.999 15 C -0.506 4.506 16 H 0.045 0.955 17 C 0.002 3.998 18 N -0.955 5.955 19 Si 0.940 3.060 20 H -0.270 1.270 21 H -0.291 1.291 22 H -0.245 1.245 23 C -0.337 4.337 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.064 0.936 27 H 0.056 0.944 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.150 0.850 31 H 0.177 0.823 32 H 0.402 0.598 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.057 0.943 36 H 0.042 0.958 37 H 0.047 0.953 38 H 0.047 0.953 39 H 0.042 0.958 40 H 0.057 0.943 41 H 0.020 0.980 42 H 0.019 0.981 43 H 0.262 0.738 44 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.384 23.009 -2.038 26.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.343 5.343 3 C -0.053 4.053 4 C 0.163 3.837 5 C -0.337 4.337 6 C 0.016 3.984 7 N -0.333 5.333 8 C 0.187 3.813 9 N -0.349 5.349 10 C 0.026 3.974 11 C -0.058 4.058 12 C -0.180 4.180 13 C -0.179 4.179 14 C -0.037 4.037 15 C -0.544 4.544 16 H 0.064 0.936 17 C -0.194 4.194 18 N -0.597 5.597 19 Si 0.764 3.236 20 H -0.196 1.196 21 H -0.217 1.217 22 H -0.168 1.168 23 C -0.368 4.368 24 H 0.088 0.912 25 H 0.091 0.909 26 H 0.083 0.917 27 H 0.075 0.925 28 H 0.102 0.898 29 H 0.094 0.906 30 H 0.168 0.832 31 H 0.194 0.806 32 H 0.239 0.761 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.061 0.939 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.061 0.939 40 H 0.076 0.924 41 H 0.038 0.962 42 H 0.037 0.963 43 H 0.071 0.929 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 13.337 22.338 -2.000 26.093 hybrid contribution -1.356 0.207 0.057 1.373 sum 11.981 22.545 -1.944 25.605 Atomic orbital electron populations 1.21853 0.78669 1.03298 1.02279 1.46516 1.05950 1.03381 1.78465 1.21822 0.97611 0.83768 1.02113 1.17957 0.91738 0.85853 0.88159 1.21529 0.92443 1.00561 1.19134 1.22559 1.00350 0.86085 0.89388 1.67215 1.07179 1.32390 1.26487 1.18244 0.88351 0.86156 0.88512 1.44624 1.06223 1.05073 1.78963 1.21337 0.78792 0.96551 1.00697 1.20531 0.96012 0.93106 0.96119 1.21674 0.99721 1.00099 0.96456 1.21670 0.99015 1.00510 0.96740 1.19537 0.92308 0.95429 0.96441 1.21394 0.92365 0.92698 1.47917 0.93642 1.25913 1.00923 0.97611 0.94950 1.70059 1.16082 1.20320 1.53192 0.85814 0.78446 0.80667 0.78655 1.19569 1.21705 1.16800 1.20899 1.00839 0.90999 1.24045 0.91222 0.90947 0.91703 0.92510 0.89804 0.90563 0.83234 0.80567 0.76072 0.92144 0.92075 0.92455 0.93925 0.93350 0.93390 0.93911 0.92441 0.96160 0.96307 0.92892 0.85182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.26 10.63 127.77 1.36 2.62 16 2 N -0.63 -11.47 3.40 -746.76 -2.54 -14.01 16 3 C 0.09 1.00 10.14 127.77 1.30 2.29 16 4 C 0.27 6.45 6.56 38.54 0.25 6.70 16 5 C -0.31 -6.43 9.22 22.50 0.21 -6.22 16 6 C 0.17 3.97 11.16 84.53 0.94 4.91 16 7 N -0.61 -17.91 10.39 -193.56 -2.01 -19.92 16 8 C 0.42 12.66 7.65 132.94 1.02 13.68 16 9 N -0.72 -21.28 5.13 -345.22 -1.77 -23.06 16 10 C 0.15 4.62 3.78 86.38 0.33 4.94 16 11 C -0.06 -2.08 0.54 -52.18 -0.03 -2.10 16 12 C -0.12 -4.40 8.05 71.98 0.58 -3.82 16 13 C -0.12 -4.40 8.05 71.98 0.58 -3.82 16 14 C 0.00 0.03 3.11 29.85 0.09 0.12 16 15 C -0.51 -27.63 8.20 25.60 0.21 -27.42 16 16 H 0.05 2.73 5.92 -2.92 -0.02 2.71 16 17 C 0.00 0.11 5.47 84.66 0.46 0.57 16 18 N -0.95 -59.32 13.96 21.45 0.30 -59.02 16 19 Si 0.94 43.43 27.47 68.60 1.88 45.32 16 20 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 21 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 22 H -0.24 -10.35 6.54 99.48 0.65 -9.70 16 23 C -0.34 -9.20 8.58 22.62 0.19 -9.01 16 24 H 0.07 1.25 5.39 -2.39 -0.01 1.24 16 25 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 26 H 0.06 0.85 8.14 -2.39 -0.02 0.84 16 27 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.08 0.65 8.07 -2.39 -0.02 0.63 16 29 H 0.08 0.77 6.49 -2.38 -0.02 0.75 16 30 H 0.15 2.22 6.42 -2.91 -0.02 2.20 16 31 H 0.18 2.81 8.06 -2.91 -0.02 2.78 16 32 H 0.40 11.92 6.29 -92.71 -0.58 11.34 16 33 H 0.06 1.82 7.92 -2.39 -0.02 1.80 16 34 H 0.06 1.83 7.93 -2.38 -0.02 1.81 16 35 H 0.06 1.78 6.86 -2.39 -0.02 1.77 16 36 H 0.04 1.77 6.62 -2.38 -0.02 1.75 16 37 H 0.05 1.69 8.14 -2.39 -0.02 1.68 16 38 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 39 H 0.04 1.77 6.62 -2.39 -0.02 1.76 16 40 H 0.06 1.79 6.86 -2.39 -0.02 1.77 16 41 H 0.02 0.88 7.20 -2.39 -0.02 0.87 16 42 H 0.02 0.81 7.57 -2.38 -0.02 0.79 16 43 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 44 H 0.13 3.42 4.50 -2.91 -0.01 3.40 16 Total: -1.00 -67.24 339.98 3.71 -63.53 By element: Atomic # 1 Polarization: 23.37 SS G_CDS: 0.36 Total: 23.72 kcal Atomic # 6 Polarization: -24.05 SS G_CDS: 7.49 Total: -16.56 kcal Atomic # 7 Polarization: -109.99 SS G_CDS: -6.02 Total: -116.01 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 1.88 Total: 45.32 kcal Total: -67.24 3.71 -63.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612198326.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.035 kcal (2) G-P(sol) polarization free energy of solvation -67.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds