Wall clock time and date at job start Mon Mar 30 2020 02:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47357 * 2 1 4 4 C 1.53003 * 109.47224 * 120.00583 * 2 1 3 5 5 C 1.50703 * 109.46564 * 294.04137 * 4 2 1 6 6 H 1.07996 * 120.00197 * 0.02562 * 5 4 2 7 7 C 1.37882 * 119.99736 * 180.02562 * 5 4 2 8 8 N 1.31517 * 119.99705 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 119.99944 * 180.02562 * 7 5 4 10 10 H 1.48489 * 109.47316 * 59.99977 * 9 7 5 11 11 H 1.48506 * 109.46903 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47133 * 299.99459 * 9 7 5 13 13 C 1.52998 * 109.46806 * 240.00040 * 2 1 3 14 14 N 1.46903 * 109.47266 * 150.51465 * 13 2 1 15 15 C 1.46854 * 110.99644 * 63.74679 * 14 13 2 16 16 C 1.53026 * 109.52292 * 174.16170 * 15 14 13 17 17 C 1.53115 * 109.28336 * 59.17625 * 16 15 14 18 18 C 1.53118 * 109.16021 * 302.34747 * 17 16 15 19 19 C 1.46838 * 111.00228 * 299.53927 * 14 13 2 20 20 H 1.08998 * 109.46822 * 65.81651 * 19 14 13 21 21 C 1.50703 * 109.46185 * 305.84906 * 19 14 13 22 22 N 1.30501 * 125.64644 * 335.02789 * 21 19 14 23 23 C 1.34131 * 109.25341 * 179.97438 * 22 21 19 24 24 C 1.34670 * 108.02011 * 0.02562 * 23 22 21 25 25 N 1.35043 * 125.65333 * 154.71671 * 21 19 14 26 26 H 0.97004 * 126.39111 * 0.02562 * 25 21 19 27 27 H 1.09006 * 109.46833 * 305.01130 * 1 2 3 28 28 H 1.08997 * 109.47147 * 65.00986 * 1 2 3 29 29 H 1.08996 * 109.47207 * 185.01242 * 1 2 3 30 30 H 1.08996 * 109.47267 * 54.03674 * 4 2 1 31 31 H 1.08995 * 109.46701 * 174.04517 * 4 2 1 32 32 H 0.97001 * 119.99631 * 180.02562 * 8 7 5 33 33 H 1.08998 * 109.47519 * 270.51900 * 13 2 1 34 34 H 1.09008 * 109.47261 * 30.52192 * 13 2 1 35 35 H 1.09004 * 109.45775 * 294.17545 * 15 14 13 36 36 H 1.09002 * 109.46430 * 54.13953 * 15 14 13 37 37 H 1.09000 * 109.50541 * 179.11811 * 16 15 14 38 38 H 1.09004 * 109.50840 * 299.23364 * 16 15 14 39 39 H 1.09003 * 109.52345 * 62.24654 * 17 16 15 40 40 H 1.08999 * 109.52912 * 182.43989 * 17 16 15 41 41 H 1.09000 * 109.50341 * 177.58985 * 18 17 16 42 42 H 1.09000 * 109.50322 * 297.66884 * 18 17 16 43 43 H 1.07999 * 125.99010 * 179.97438 * 23 22 21 44 44 H 1.08001 * 126.58678 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.6617 0.0690 2.4752 6 1 1.1121 0.9931 2.3737 7 6 2.0172 -0.3876 3.7267 8 7 2.6870 -1.5127 3.8503 9 14 1.5477 0.5917 5.2465 10 1 0.0698 0.7177 5.3171 11 1 2.0428 -0.1084 6.4590 12 1 2.1568 1.9439 5.1717 13 6 2.0399 -0.7212 -1.2493 14 7 3.3398 -0.1608 -1.6420 15 6 4.3514 -0.4012 -0.6049 16 6 5.7197 0.0644 -1.1075 17 6 5.6533 1.5562 -1.4461 18 6 4.5594 1.7858 -2.4926 19 6 3.2246 1.2703 -1.9497 20 1 2.9657 1.8172 -1.0431 21 6 2.1486 1.4763 -2.9846 22 7 1.7472 0.5875 -3.8517 23 6 0.7774 1.1176 -4.6118 24 6 0.5705 2.3831 -4.2004 25 7 1.4359 2.6092 -3.1643 26 1 1.5229 3.4307 -2.6558 27 1 -0.3633 0.5896 0.8418 28 1 -0.3633 0.4341 -0.9314 29 1 -0.3633 -1.0237 0.0898 30 1 1.5922 -1.7136 1.3041 31 1 3.1248 -0.8146 1.1974 32 1 2.9368 -1.8342 4.7308 33 1 2.1523 -1.7840 -1.0349 34 1 1.3263 -0.5881 -2.0625 35 1 4.0872 0.1535 0.2955 36 1 4.3915 -1.4662 -0.3764 37 1 6.4676 -0.0997 -0.3317 38 1 5.9908 -0.4995 -2.0001 39 1 5.4204 2.1241 -0.5453 40 1 6.6136 1.8824 -1.8454 41 1 4.4781 2.8515 -2.7063 42 1 4.8125 1.2495 -3.4072 43 1 0.2548 0.6175 -5.4138 44 1 -0.1447 3.0832 -4.6064 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000618886985.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:32 Heat of formation + Delta-G solvation = 52.303293 kcal Electronic energy + Delta-G solvation = -22979.901409 eV Core-core repulsion = 19932.676954 eV Total energy + Delta-G solvation = -3047.224455 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.98695 -39.04175 -35.40109 -32.88909 -32.31916 -31.75732 -31.22291 -28.30734 -27.17961 -25.72923 -23.69347 -23.29801 -21.90029 -21.39435 -20.47179 -19.69770 -18.81418 -17.49902 -16.33992 -15.52188 -15.20926 -14.80347 -14.54320 -14.29724 -13.93600 -13.61263 -13.43638 -13.28245 -13.18257 -12.70335 -12.32697 -12.25951 -11.85956 -11.56664 -11.27836 -11.04517 -10.92558 -10.83350 -10.64202 -10.45534 -10.33597 -10.28430 -10.13647 -9.81041 -9.70656 -9.55470 -9.10837 -9.01392 -8.32066 -8.23041 -7.53748 -5.98299 -3.99588 2.16617 3.15290 3.30657 3.32877 3.36082 3.37734 4.37455 4.45625 4.54272 4.96977 5.10294 5.17056 5.25830 5.36668 5.46187 5.49113 5.53339 5.73081 5.80635 5.88824 5.90331 5.97898 6.05467 6.10989 6.19281 6.20652 6.22811 6.37765 6.40042 6.54838 6.57914 6.68067 6.73375 6.89309 6.98068 7.08288 7.19204 7.39901 7.57983 7.67197 7.71411 7.89015 8.02413 8.33238 8.45943 9.06038 9.63277 11.12370 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.017933 B = 0.005759 C = 0.004973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.976991 B = 4861.049392 C = 5629.221767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.122 4.122 3 H 0.051 0.949 4 C 0.019 3.981 5 C -0.515 4.515 6 H 0.050 0.950 7 C 0.058 3.942 8 N -0.894 5.894 9 Si 0.886 3.114 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.279 1.279 13 C 0.053 3.947 14 N -0.509 5.509 15 C 0.046 3.954 16 C -0.118 4.118 17 C -0.119 4.119 18 C -0.105 4.105 19 C 0.166 3.834 20 H 0.061 0.939 21 C 0.229 3.771 22 N -0.462 5.462 23 C -0.033 4.033 24 C -0.066 4.066 25 N -0.568 5.568 26 H 0.416 0.584 27 H 0.054 0.946 28 H 0.026 0.974 29 H 0.046 0.954 30 H 0.014 0.986 31 H 0.030 0.970 32 H 0.260 0.740 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.062 0.938 36 H 0.079 0.921 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.057 0.943 42 H 0.075 0.925 43 H 0.165 0.835 44 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.338 8.524 -14.289 16.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.142 4.142 3 H 0.069 0.931 4 C -0.018 4.018 5 C -0.553 4.553 6 H 0.068 0.932 7 C -0.143 4.143 8 N -0.533 5.533 9 Si 0.714 3.286 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.204 1.204 13 C -0.074 4.074 14 N -0.233 5.233 15 C -0.081 4.081 16 C -0.156 4.156 17 C -0.157 4.157 18 C -0.143 4.143 19 C 0.055 3.945 20 H 0.078 0.922 21 C -0.036 4.036 22 N -0.181 5.181 23 C -0.182 4.182 24 C -0.200 4.200 25 N -0.171 5.171 26 H 0.253 0.747 27 H 0.073 0.927 28 H 0.045 0.955 29 H 0.065 0.935 30 H 0.032 0.968 31 H 0.048 0.952 32 H 0.070 0.930 33 H 0.088 0.912 34 H 0.099 0.901 35 H 0.080 0.920 36 H 0.098 0.902 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.076 0.924 42 H 0.094 0.906 43 H 0.183 0.817 44 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 1.862 7.306 -14.699 16.519 hybrid contribution -1.089 2.197 1.993 3.160 sum 0.773 9.503 -12.705 15.885 Atomic orbital electron populations 1.21625 0.96401 1.01098 0.99111 1.21888 0.95550 0.99445 0.97325 0.93087 1.19458 0.96977 0.95207 0.90112 1.21206 1.35317 1.07490 0.91321 0.93171 1.24987 0.95380 0.95047 0.98882 1.69946 1.39240 1.20727 1.23434 0.86759 0.78809 0.80190 0.82822 1.20411 1.21292 1.20439 1.22522 0.89534 0.98905 0.96443 1.62078 1.08112 1.10897 1.42206 1.22406 0.90334 1.02096 0.93260 1.21629 0.97343 0.95339 1.01261 1.21571 0.98027 0.97441 0.98656 1.21599 0.93404 0.99620 0.99716 1.19890 0.90174 0.92113 0.92309 0.92154 1.23108 0.97814 0.82775 0.99900 1.70369 1.12356 1.29356 1.06000 1.22416 1.00189 0.92758 1.02824 1.22643 1.00912 1.00672 0.95764 1.43260 1.30375 1.14947 1.28511 0.74726 0.92706 0.95537 0.93459 0.96789 0.95151 0.93041 0.91196 0.90111 0.91983 0.90227 0.91634 0.91518 0.91974 0.91951 0.92404 0.90617 0.81726 0.81104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.48 8.82 37.16 0.33 -2.15 16 2 C -0.12 -2.52 1.80 -90.62 -0.16 -2.69 16 3 H 0.05 1.06 5.61 -51.93 -0.29 0.77 16 4 C 0.02 0.48 3.94 -27.88 -0.11 0.37 16 5 C -0.51 -14.23 8.48 -34.44 -0.29 -14.53 16 6 H 0.05 1.37 7.12 -52.49 -0.37 0.99 16 7 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 8 N -0.89 -26.50 13.29 55.43 0.74 -25.76 16 9 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 C 0.05 1.01 4.74 -3.82 -0.02 0.99 16 14 N -0.51 -8.74 4.57 -228.08 -1.04 -9.78 16 15 C 0.05 0.80 3.95 -3.84 -0.02 0.79 16 16 C -0.12 -1.65 6.09 -26.66 -0.16 -1.81 16 17 C -0.12 -1.49 6.00 -26.61 -0.16 -1.65 16 18 C -0.10 -1.34 5.36 -26.65 -0.14 -1.48 16 19 C 0.17 2.51 1.94 -68.88 -0.13 2.38 16 20 H 0.06 0.98 6.14 -51.93 -0.32 0.66 16 21 C 0.23 3.40 6.10 -155.41 -0.95 2.45 16 22 N -0.46 -7.52 9.34 -10.81 -0.10 -7.63 16 23 C -0.03 -0.44 11.87 -17.81 -0.21 -0.65 16 24 C -0.07 -0.73 12.04 -16.56 -0.20 -0.93 16 25 N -0.57 -6.69 6.15 -10.23 -0.06 -6.76 16 26 H 0.42 3.73 8.96 -40.82 -0.37 3.37 16 27 H 0.05 1.14 7.17 -51.93 -0.37 0.77 16 28 H 0.03 0.47 8.00 -51.93 -0.42 0.06 16 29 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.03 0.78 4.74 -51.93 -0.25 0.54 16 32 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 33 H 0.07 1.39 7.80 -51.93 -0.41 0.99 16 34 H 0.08 1.55 5.38 -51.92 -0.28 1.27 16 35 H 0.06 1.24 5.75 -51.93 -0.30 0.94 16 36 H 0.08 1.46 7.91 -51.93 -0.41 1.05 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.17 1.78 8.06 -52.49 -0.42 1.36 16 44 H 0.17 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 334.92 15.07 5.05 5.05 Total: -1.00 -31.43 334.92 -9.91 -41.34 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -7.14 Total: 4.36 kcal Atomic # 6 Polarization: -15.04 SS G_CDS: -2.32 Total: -17.37 kcal Atomic # 7 Polarization: -49.45 SS G_CDS: -0.47 Total: -49.92 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.43 -9.91 -41.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618886985.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.645 kcal (2) G-P(sol) polarization free energy of solvation -31.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds