Wall clock time and date at job start Mon Mar 30 2020 02:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47357 * 2 1 4 4 C 1.53003 * 109.47224 * 120.00583 * 2 1 3 5 5 C 1.50703 * 109.46564 * 294.04137 * 4 2 1 6 6 H 1.07996 * 120.00197 * 0.02562 * 5 4 2 7 7 C 1.37882 * 119.99736 * 180.02562 * 5 4 2 8 8 N 1.31517 * 119.99705 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 119.99944 * 180.02562 * 7 5 4 10 10 H 1.48489 * 109.47316 * 59.99977 * 9 7 5 11 11 H 1.48506 * 109.46903 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47133 * 299.99459 * 9 7 5 13 13 C 1.52998 * 109.46806 * 240.00040 * 2 1 3 14 14 N 1.46903 * 109.47266 * 150.51465 * 13 2 1 15 15 C 1.46854 * 110.99644 * 63.74679 * 14 13 2 16 16 C 1.53026 * 109.52292 * 174.16170 * 15 14 13 17 17 C 1.53115 * 109.28336 * 59.17625 * 16 15 14 18 18 C 1.53118 * 109.16021 * 302.34747 * 17 16 15 19 19 C 1.46838 * 111.00228 * 299.53927 * 14 13 2 20 20 H 1.08998 * 109.46822 * 65.81651 * 19 14 13 21 21 C 1.50703 * 109.46185 * 305.84906 * 19 14 13 22 22 N 1.30501 * 125.64644 * 335.02789 * 21 19 14 23 23 C 1.34131 * 109.25341 * 179.97438 * 22 21 19 24 24 C 1.34670 * 108.02011 * 0.02562 * 23 22 21 25 25 N 1.35043 * 125.65333 * 154.71671 * 21 19 14 26 26 H 0.97004 * 126.39111 * 0.02562 * 25 21 19 27 27 H 1.09006 * 109.46833 * 305.01130 * 1 2 3 28 28 H 1.08997 * 109.47147 * 65.00986 * 1 2 3 29 29 H 1.08996 * 109.47207 * 185.01242 * 1 2 3 30 30 H 1.08996 * 109.47267 * 54.03674 * 4 2 1 31 31 H 1.08995 * 109.46701 * 174.04517 * 4 2 1 32 32 H 0.97001 * 119.99631 * 180.02562 * 8 7 5 33 33 H 1.08998 * 109.47519 * 270.51900 * 13 2 1 34 34 H 1.09008 * 109.47261 * 30.52192 * 13 2 1 35 35 H 1.09004 * 109.45775 * 294.17545 * 15 14 13 36 36 H 1.09002 * 109.46430 * 54.13953 * 15 14 13 37 37 H 1.09000 * 109.50541 * 179.11811 * 16 15 14 38 38 H 1.09004 * 109.50840 * 299.23364 * 16 15 14 39 39 H 1.09003 * 109.52345 * 62.24654 * 17 16 15 40 40 H 1.08999 * 109.52912 * 182.43989 * 17 16 15 41 41 H 1.09000 * 109.50341 * 177.58985 * 18 17 16 42 42 H 1.09000 * 109.50322 * 297.66884 * 18 17 16 43 43 H 1.07999 * 125.99010 * 179.97438 * 23 22 21 44 44 H 1.08001 * 126.58678 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.6617 0.0690 2.4752 6 1 1.1121 0.9931 2.3737 7 6 2.0172 -0.3876 3.7267 8 7 2.6870 -1.5127 3.8503 9 14 1.5477 0.5917 5.2465 10 1 0.0698 0.7177 5.3171 11 1 2.0428 -0.1084 6.4590 12 1 2.1568 1.9439 5.1717 13 6 2.0399 -0.7212 -1.2493 14 7 3.3398 -0.1608 -1.6420 15 6 4.3514 -0.4012 -0.6049 16 6 5.7197 0.0644 -1.1075 17 6 5.6533 1.5562 -1.4461 18 6 4.5594 1.7858 -2.4926 19 6 3.2246 1.2703 -1.9497 20 1 2.9657 1.8172 -1.0431 21 6 2.1486 1.4763 -2.9846 22 7 1.7472 0.5875 -3.8517 23 6 0.7774 1.1176 -4.6118 24 6 0.5705 2.3831 -4.2004 25 7 1.4359 2.6092 -3.1643 26 1 1.5229 3.4307 -2.6558 27 1 -0.3633 0.5896 0.8418 28 1 -0.3633 0.4341 -0.9314 29 1 -0.3633 -1.0237 0.0898 30 1 1.5922 -1.7136 1.3041 31 1 3.1248 -0.8146 1.1974 32 1 2.9368 -1.8342 4.7308 33 1 2.1523 -1.7840 -1.0349 34 1 1.3263 -0.5881 -2.0625 35 1 4.0872 0.1535 0.2955 36 1 4.3915 -1.4662 -0.3764 37 1 6.4676 -0.0997 -0.3317 38 1 5.9908 -0.4995 -2.0001 39 1 5.4204 2.1241 -0.5453 40 1 6.6136 1.8824 -1.8454 41 1 4.4781 2.8515 -2.7063 42 1 4.8125 1.2495 -3.4072 43 1 0.2548 0.6175 -5.4138 44 1 -0.1447 3.0832 -4.6064 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000618886985.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:31 Heat of formation + Delta-G solvation = 32.616791 kcal Electronic energy + Delta-G solvation = -22980.755080 eV Core-core repulsion = 19932.676954 eV Total energy + Delta-G solvation = -3048.078126 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.99413 -40.38330 -36.98373 -34.73503 -33.38127 -33.14048 -32.61891 -29.43792 -29.06793 -27.18075 -25.55940 -24.47118 -23.39295 -22.37579 -21.53381 -21.25830 -20.09239 -18.66204 -18.40458 -16.93439 -16.66378 -16.31388 -15.89923 -15.50564 -15.20878 -14.89469 -14.66758 -14.56491 -14.36392 -14.12439 -14.04434 -13.57786 -13.44091 -13.25386 -12.94214 -12.82684 -12.55731 -12.33482 -12.31542 -12.22539 -11.62625 -11.53621 -11.45224 -11.26045 -11.11983 -11.04951 -10.82862 -10.62646 -10.47931 -9.20806 -9.01909 -8.16014 -6.25505 1.21710 1.37062 1.39029 1.46807 2.21299 2.30899 2.40228 3.08338 3.16102 3.51710 3.83402 4.04513 4.05495 4.14497 4.26200 4.33769 4.36112 4.38763 4.45536 4.60075 4.63910 4.74855 4.80096 4.85017 4.88307 4.98384 5.03041 5.07559 5.09882 5.22146 5.24740 5.26157 5.30061 5.36132 5.37833 5.51083 5.55916 5.76343 5.89575 5.94417 6.20953 6.23348 6.30618 6.59531 6.89311 7.33343 7.41702 8.94382 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.017933 B = 0.005759 C = 0.004973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.976991 B = 4861.049392 C = 5629.221767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.107 4.107 3 H 0.053 0.947 4 C 0.027 3.973 5 C -0.529 4.529 6 H 0.053 0.947 7 C 0.003 3.997 8 N -0.930 5.930 9 Si 0.954 3.046 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.267 1.267 13 C 0.067 3.933 14 N -0.510 5.510 15 C 0.052 3.948 16 C -0.113 4.113 17 C -0.115 4.115 18 C -0.097 4.097 19 C 0.166 3.834 20 H 0.049 0.951 21 C 0.205 3.795 22 N -0.499 5.499 23 C -0.065 4.065 24 C -0.040 4.040 25 N -0.559 5.559 26 H 0.429 0.571 27 H 0.043 0.957 28 H 0.048 0.952 29 H 0.038 0.962 30 H -0.022 1.022 31 H 0.018 0.982 32 H 0.261 0.739 33 H 0.049 0.951 34 H 0.084 0.916 35 H 0.031 0.969 36 H 0.056 0.944 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.057 0.943 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.068 0.932 43 H 0.181 0.819 44 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.964 11.206 -15.250 18.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.127 4.127 3 H 0.071 0.929 4 C -0.010 4.010 5 C -0.567 4.567 6 H 0.071 0.929 7 C -0.194 4.194 8 N -0.571 5.571 9 Si 0.780 3.220 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.192 1.192 13 C -0.061 4.061 14 N -0.233 5.233 15 C -0.076 4.076 16 C -0.150 4.150 17 C -0.153 4.153 18 C -0.136 4.136 19 C 0.056 3.944 20 H 0.067 0.933 21 C -0.059 4.059 22 N -0.219 5.219 23 C -0.213 4.213 24 C -0.174 4.174 25 N -0.163 5.163 26 H 0.269 0.731 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.058 0.942 30 H -0.004 1.004 31 H 0.036 0.964 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.103 0.897 35 H 0.049 0.951 36 H 0.075 0.925 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.076 0.924 40 H 0.108 0.892 41 H 0.101 0.899 42 H 0.087 0.913 43 H 0.198 0.802 44 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 1.490 10.015 -15.665 18.653 hybrid contribution -1.009 1.346 2.226 2.791 sum 0.481 11.362 -13.439 17.604 Atomic orbital electron populations 1.21536 0.95549 1.00604 0.99782 1.21691 0.96100 0.98954 0.95962 0.92915 1.19332 0.96067 0.93649 0.91918 1.21562 1.35085 1.07693 0.92365 0.92883 1.25856 0.95278 0.96053 1.02257 1.70088 1.40401 1.22404 1.24209 0.85665 0.78725 0.78979 0.78672 1.19669 1.20975 1.19194 1.22295 0.90755 0.97605 0.95490 1.62083 1.06900 1.12903 1.41389 1.22270 0.92544 1.00340 0.92440 1.21598 0.95027 0.96882 1.01540 1.21570 0.99377 0.95772 0.98566 1.21578 0.91947 1.00918 0.99132 1.19925 0.92075 0.90134 0.92280 0.93298 1.22863 0.98783 0.83958 1.00324 1.70261 1.13733 1.30844 1.07060 1.22842 1.00523 0.94140 1.03766 1.23268 0.99772 1.00373 0.93998 1.43255 1.29699 1.14749 1.28587 0.73088 0.93750 0.93261 0.94241 1.00352 0.96379 0.92994 0.93259 0.89739 0.95070 0.92510 0.90979 0.90922 0.92410 0.89202 0.89863 0.91286 0.80210 0.76980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.66 8.82 71.98 0.63 -4.03 16 2 C -0.11 -4.54 1.80 -10.79 -0.02 -4.56 16 3 H 0.05 2.23 5.61 -2.39 -0.01 2.21 16 4 C 0.03 1.43 3.94 29.85 0.12 1.54 16 5 C -0.53 -29.84 8.48 25.60 0.22 -29.62 16 6 H 0.05 2.90 7.12 -2.91 -0.02 2.88 16 7 C 0.00 0.18 5.46 84.66 0.46 0.65 16 8 N -0.93 -56.64 13.29 21.45 0.28 -56.35 16 9 Si 0.95 44.35 29.54 68.60 2.03 46.38 16 10 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 11 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 12 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 13 C 0.07 2.61 4.74 86.30 0.41 3.02 16 14 N -0.51 -17.85 4.57 -875.50 -4.00 -21.85 16 15 C 0.05 1.87 3.95 86.32 0.34 2.21 16 16 C -0.11 -3.12 6.09 30.64 0.19 -2.94 16 17 C -0.12 -2.67 6.00 30.67 0.18 -2.48 16 18 C -0.10 -2.31 5.36 30.65 0.16 -2.15 16 19 C 0.17 4.92 1.94 44.20 0.09 5.01 16 20 H 0.05 1.56 6.14 -2.39 -0.01 1.55 16 21 C 0.21 5.80 6.10 138.13 0.84 6.65 16 22 N -0.50 -15.74 9.34 -188.12 -1.76 -17.49 16 23 C -0.07 -1.60 11.87 83.52 0.99 -0.61 16 24 C -0.04 -0.74 12.04 83.09 1.00 0.26 16 25 N -0.56 -11.61 6.15 -186.27 -1.15 -12.75 16 26 H 0.43 6.36 8.96 -92.71 -0.83 5.53 16 27 H 0.04 1.83 7.17 -2.38 -0.02 1.82 16 28 H 0.05 1.72 8.00 -2.39 -0.02 1.70 16 29 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 30 H -0.02 -1.30 8.14 -2.39 -0.02 -1.31 16 31 H 0.02 0.99 4.74 -2.39 -0.01 0.98 16 32 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 33 H 0.05 2.09 7.80 -2.39 -0.02 2.07 16 34 H 0.08 3.28 5.38 -2.38 -0.01 3.26 16 35 H 0.03 1.31 5.75 -2.38 -0.01 1.30 16 36 H 0.06 2.24 7.91 -2.39 -0.02 2.23 16 37 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.07 1.93 8.14 -2.38 -0.02 1.92 16 39 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.18 3.57 8.06 -2.91 -0.02 3.55 16 44 H 0.21 2.04 8.06 -2.91 -0.02 2.02 16 Total: -1.00 -69.52 334.92 1.18 -68.34 By element: Atomic # 1 Polarization: 20.62 SS G_CDS: 0.16 Total: 20.78 kcal Atomic # 6 Polarization: -32.66 SS G_CDS: 5.62 Total: -27.04 kcal Atomic # 7 Polarization: -101.84 SS G_CDS: -6.62 Total: -108.46 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -69.52 1.18 -68.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618886985.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.955 kcal (2) G-P(sol) polarization free energy of solvation -69.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds