Wall clock time and date at job start Mon Mar 30 2020 02:03:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.46534 * 2 1 4 4 C 1.52998 * 109.47357 * 240.00056 * 2 1 3 5 5 C 1.50707 * 109.46847 * 64.99820 * 4 2 1 6 6 H 1.07992 * 120.00131 * 359.97438 * 5 4 2 7 7 C 1.37884 * 119.99509 * 180.02562 * 5 4 2 8 8 N 1.31508 * 120.00029 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99690 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.46985 * 60.00092 * 9 7 5 11 11 H 1.48496 * 109.47040 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47190 * 300.00014 * 9 7 5 13 13 C 1.52998 * 109.47221 * 119.99492 * 2 1 3 14 14 N 1.46907 * 109.47130 * 185.21889 * 13 2 1 15 15 C 1.46842 * 110.99888 * 75.77755 * 14 13 2 16 16 C 1.53034 * 109.52179 * 185.83888 * 15 14 13 17 17 C 1.53123 * 109.28204 * 300.82282 * 16 15 14 18 18 C 1.53120 * 109.15762 * 57.65406 * 17 16 15 19 19 H 1.08999 * 109.50242 * 62.28755 * 18 17 16 20 20 C 1.50698 * 109.50417 * 182.40392 * 18 17 16 21 21 N 1.30494 * 125.65326 * 214.68948 * 20 18 17 22 22 C 1.34127 * 109.25981 * 179.89581 * 21 20 18 23 23 C 1.34670 * 108.01752 * 0.36876 * 22 21 20 24 24 N 1.35048 * 125.64875 * 35.00286 * 20 18 17 25 25 H 0.97005 * 126.39743 * 359.93843 * 24 20 18 26 26 C 1.46846 * 110.99762 * 199.99433 * 14 13 2 27 27 H 1.09001 * 109.46789 * 174.58567 * 1 2 3 28 28 H 1.08997 * 109.47316 * 294.58145 * 1 2 3 29 29 H 1.08994 * 109.47584 * 54.59051 * 1 2 3 30 30 H 1.09001 * 109.47311 * 184.99518 * 4 2 1 31 31 H 1.08999 * 109.47013 * 304.99592 * 4 2 1 32 32 H 0.97004 * 119.99642 * 179.97438 * 8 7 5 33 33 H 1.09001 * 109.47743 * 305.22144 * 13 2 1 34 34 H 1.09002 * 109.46772 * 65.22291 * 13 2 1 35 35 H 1.09000 * 109.46663 * 305.85949 * 15 14 13 36 36 H 1.09007 * 109.45979 * 65.82420 * 15 14 13 37 37 H 1.09005 * 109.50428 * 60.76787 * 16 15 14 38 38 H 1.09008 * 109.50468 * 180.88444 * 16 15 14 39 39 H 1.09000 * 109.52373 * 177.55742 * 17 16 15 40 40 H 1.09000 * 109.52222 * 297.75354 * 17 16 15 41 41 H 1.08000 * 125.99194 * 180.12063 * 22 21 20 42 42 H 1.07996 * 126.58985 * 179.81207 * 23 22 21 43 43 H 1.09000 * 109.46317 * 294.16976 * 26 14 13 44 44 H 1.08994 * 109.46966 * 54.14220 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6413 0.0571 -2.4766 6 1 1.0799 0.9742 -2.3757 7 6 1.9924 -0.4022 -3.7283 8 7 2.6756 -1.5192 -3.8511 9 14 1.4976 0.5622 -5.2497 10 1 2.0896 1.9227 -5.1877 11 1 1.9927 -0.1378 -6.4622 12 1 0.0176 0.6686 -5.3087 13 6 2.0400 -0.7211 1.2493 14 7 3.5037 -0.6130 1.3139 15 6 3.9135 0.7289 1.7471 16 6 5.4367 0.8504 1.6632 17 6 6.0788 -0.2135 2.5579 18 6 5.5978 -1.5985 2.1163 19 1 5.9210 -1.7866 1.0926 20 6 6.1786 -2.6475 3.0291 21 7 6.5415 -3.8493 2.6727 22 6 7.0147 -4.5042 3.7433 23 6 6.9348 -3.6796 4.8050 24 7 6.4045 -2.5017 4.3525 25 1 6.2248 -1.7098 4.8833 26 6 4.0698 -1.6490 2.1871 27 1 -0.3633 -1.0231 -0.0970 28 1 -0.3634 0.4275 0.9345 29 1 -0.3634 0.5954 -0.8375 30 1 3.1264 -0.7994 -1.2056 31 1 1.6055 -1.7198 -1.2951 32 1 2.9222 -1.8425 -4.7318 33 1 1.6024 -0.2641 2.1368 34 1 1.7550 -1.7722 1.2038 35 1 3.4534 1.4758 1.1001 36 1 3.5922 0.8924 2.7758 37 1 5.7575 0.7007 0.6322 38 1 5.7419 1.8413 1.9997 39 1 7.1637 -0.1589 2.4677 40 1 5.7893 -0.0407 3.5945 41 1 7.3900 -5.5169 3.7530 42 1 7.2325 -3.9043 5.8185 43 1 3.7479 -1.4744 3.2137 44 1 3.7233 -2.6292 1.8597 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000618887166.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:45 Heat of formation + Delta-G solvation = 39.072721 kcal Electronic energy + Delta-G solvation = -21940.132146 eV Core-core repulsion = 18892.333971 eV Total energy + Delta-G solvation = -3047.798176 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.15495 -38.92625 -35.63250 -33.08337 -32.48906 -31.76904 -31.43982 -28.33484 -26.96118 -25.94741 -23.72018 -23.13906 -22.35269 -21.55322 -20.58597 -19.60878 -18.80998 -17.89246 -16.22812 -15.66755 -15.31391 -14.75536 -14.51779 -14.29658 -14.23609 -13.93149 -13.78422 -13.43510 -13.20545 -13.04834 -12.47921 -12.26263 -11.91364 -11.52626 -11.32627 -11.21594 -10.87445 -10.80838 -10.76163 -10.64540 -10.38858 -10.27185 -10.10353 -10.04018 -9.99892 -9.57302 -9.00439 -8.81084 -8.45941 -8.18327 -7.81843 -5.82327 -3.83024 1.96528 3.01920 3.11050 3.41485 3.46380 3.48104 4.05226 4.48144 4.58537 4.72801 4.84900 4.97637 5.06769 5.29667 5.33991 5.40158 5.49846 5.52632 5.54069 5.63429 5.67119 5.73098 5.88247 5.92387 6.01049 6.09329 6.15805 6.18870 6.22346 6.31476 6.40746 6.45270 6.56129 6.67435 7.01951 7.07662 7.25878 7.34780 7.49851 7.56262 7.90999 8.08329 8.13526 8.27695 8.63066 9.24823 9.78797 11.28613 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.021786 B = 0.003970 C = 0.003764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.932559 B = 7051.303737 C = 7437.819120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.082 4.082 3 H 0.055 0.945 4 C 0.036 3.964 5 C -0.514 4.514 6 H 0.050 0.950 7 C 0.057 3.943 8 N -0.893 5.893 9 Si 0.884 3.116 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.279 1.279 13 C 0.066 3.934 14 N -0.522 5.522 15 C 0.056 3.944 16 C -0.116 4.116 17 C -0.114 4.114 18 C -0.003 4.003 19 H 0.116 0.884 20 C 0.227 3.773 21 N -0.485 5.485 22 C -0.027 4.027 23 C -0.066 4.066 24 N -0.567 5.567 25 H 0.416 0.584 26 C 0.072 3.928 27 H 0.046 0.954 28 H 0.026 0.974 29 H 0.061 0.939 30 H 0.034 0.966 31 H 0.008 0.992 32 H 0.258 0.742 33 H 0.019 0.981 34 H 0.067 0.933 35 H 0.083 0.917 36 H 0.022 0.978 37 H 0.082 0.918 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.051 0.949 41 H 0.168 0.832 42 H 0.174 0.826 43 H 0.021 0.979 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.040 1.080 19.623 20.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.101 4.101 3 H 0.073 0.927 4 C -0.001 4.001 5 C -0.553 4.553 6 H 0.069 0.931 7 C -0.144 4.144 8 N -0.533 5.533 9 Si 0.712 3.288 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.205 1.205 13 C -0.061 4.061 14 N -0.246 5.246 15 C -0.072 4.072 16 C -0.153 4.153 17 C -0.152 4.152 18 C -0.024 4.024 19 H 0.134 0.866 20 C -0.038 4.038 21 N -0.204 5.204 22 C -0.176 4.176 23 C -0.200 4.200 24 N -0.170 5.170 25 H 0.253 0.747 26 C -0.058 4.058 27 H 0.065 0.935 28 H 0.045 0.955 29 H 0.080 0.920 30 H 0.052 0.948 31 H 0.027 0.973 32 H 0.068 0.932 33 H 0.037 0.963 34 H 0.086 0.914 35 H 0.101 0.899 36 H 0.041 0.959 37 H 0.100 0.900 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.070 0.930 41 H 0.186 0.814 42 H 0.191 0.809 43 H 0.039 0.961 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 7.265 0.495 18.214 19.615 hybrid contribution -0.541 1.129 1.126 1.683 sum 6.724 1.624 19.340 20.539 Atomic orbital electron populations 1.21699 0.96545 1.01238 0.99502 1.21210 0.94022 0.99227 0.95624 0.92651 1.19043 0.97502 0.94400 0.89151 1.21274 1.34406 1.08156 0.91431 0.93150 1.24980 0.95522 0.95064 0.98784 1.69967 1.39042 1.21115 1.23158 0.86799 0.78722 0.80204 0.83042 1.20470 1.21461 1.20515 1.22261 0.85326 1.01029 0.97494 1.61722 1.10617 1.02169 1.50068 1.22122 0.95494 0.91805 0.97800 1.21571 0.94998 0.97524 1.01249 1.21642 1.00532 0.94166 0.98879 1.19726 0.94816 0.89347 0.98481 0.86597 1.23303 1.02778 0.95301 0.82411 1.70327 1.16254 1.03657 1.30156 1.22385 1.05745 1.00753 0.88697 1.22705 1.08724 0.87476 1.01101 1.43307 1.49365 1.14406 1.09953 0.74660 1.22009 0.92569 0.97008 0.94176 0.93518 0.95453 0.92039 0.94773 0.97346 0.93217 0.96302 0.91407 0.89861 0.95949 0.89979 0.91485 0.91451 0.93037 0.81445 0.80891 0.96074 0.90039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.49 8.91 37.16 0.33 -2.15 16 2 C -0.08 -1.67 2.39 -90.62 -0.22 -1.88 16 3 H 0.06 1.14 6.69 -51.93 -0.35 0.79 16 4 C 0.04 0.93 4.39 -27.88 -0.12 0.81 16 5 C -0.51 -14.56 8.48 -34.43 -0.29 -14.85 16 6 H 0.05 1.39 7.06 -52.49 -0.37 1.02 16 7 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 8 N -0.89 -27.44 13.29 55.43 0.74 -26.70 16 9 Si 0.88 22.04 29.54 -169.99 -5.02 17.02 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 12 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 13 C 0.07 1.14 4.39 -3.82 -0.02 1.12 16 14 N -0.52 -8.53 3.97 -234.67 -0.93 -9.46 16 15 C 0.06 0.77 5.29 -3.84 -0.02 0.75 16 16 C -0.12 -1.38 6.09 -26.65 -0.16 -1.54 16 17 C -0.11 -1.21 5.07 -26.61 -0.13 -1.34 16 18 C 0.00 -0.04 2.82 -91.69 -0.26 -0.30 16 19 H 0.12 1.82 8.14 -51.93 -0.42 1.40 16 20 C 0.23 2.98 6.87 -155.42 -1.07 1.92 16 21 N -0.49 -7.47 11.25 -10.82 -0.12 -7.59 16 22 C -0.03 -0.33 11.87 -17.81 -0.21 -0.54 16 23 C -0.07 -0.63 12.04 -16.56 -0.20 -0.83 16 24 N -0.57 -5.56 5.91 -10.23 -0.06 -5.62 16 25 H 0.42 2.87 8.09 -40.82 -0.33 2.54 16 26 C 0.07 1.03 4.69 -3.83 -0.02 1.02 16 27 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 1.23 7.11 -51.93 -0.37 0.86 16 30 H 0.03 0.96 7.63 -51.93 -0.40 0.56 16 31 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 33 H 0.02 0.29 8.00 -51.93 -0.42 -0.12 16 34 H 0.07 1.21 7.79 -51.93 -0.40 0.80 16 35 H 0.08 1.26 6.64 -51.93 -0.35 0.91 16 36 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 38 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.05 0.45 7.32 -51.93 -0.38 0.07 16 41 H 0.17 1.61 8.06 -52.49 -0.42 1.18 16 42 H 0.17 0.98 8.06 -52.49 -0.42 0.55 16 43 H 0.02 0.28 8.14 -51.93 -0.42 -0.15 16 44 H 0.08 1.31 7.93 -51.93 -0.41 0.90 16 LS Contribution 346.01 15.07 5.21 5.21 Total: -1.00 -32.95 346.01 -10.23 -43.17 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -7.56 Total: 0.23 kcal Atomic # 6 Polarization: -13.77 SS G_CDS: -2.49 Total: -16.26 kcal Atomic # 7 Polarization: -49.01 SS G_CDS: -0.38 Total: -49.38 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.95 -10.23 -43.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618887166.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.245 kcal (2) G-P(sol) polarization free energy of solvation -32.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds