Wall clock time and date at job start Mon Mar 30 2020 02:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47105 * 2 1 4 4 C 1.53005 * 109.47594 * 119.99621 * 2 1 3 5 5 C 1.50697 * 109.47415 * 295.00819 * 4 2 1 6 6 H 1.08001 * 119.99890 * 359.97438 * 5 4 2 7 7 C 1.37870 * 120.00335 * 179.97438 * 5 4 2 8 8 N 1.31517 * 119.99738 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00085 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47305 * 89.99851 * 9 7 5 11 11 H 1.48508 * 109.47110 * 209.99441 * 9 7 5 12 12 H 1.48489 * 109.47334 * 329.99605 * 9 7 5 13 13 C 1.53001 * 109.47335 * 240.00347 * 2 1 3 14 14 N 1.46897 * 109.47361 * 64.99597 * 13 2 1 15 15 C 1.46854 * 110.99665 * 66.05014 * 14 13 2 16 16 C 1.53037 * 109.51886 * 185.84309 * 15 14 13 17 17 C 1.53126 * 109.27801 * 300.81620 * 16 15 14 18 18 C 1.53124 * 109.15878 * 57.65645 * 17 16 15 19 19 H 1.08999 * 109.50059 * 62.28737 * 18 17 16 20 20 C 1.50696 * 109.50007 * 182.40592 * 18 17 16 21 21 N 1.30501 * 125.64632 * 214.69353 * 20 18 17 22 22 C 1.34133 * 109.25576 * 179.89569 * 21 20 18 23 23 C 1.34670 * 108.01873 * 0.36921 * 22 21 20 24 24 N 1.35038 * 125.65482 * 35.00230 * 20 18 17 25 25 H 0.97006 * 126.39609 * 359.93863 * 24 20 18 26 26 C 1.46844 * 111.00090 * 190.25690 * 14 13 2 27 27 H 1.08998 * 109.47215 * 59.99886 * 1 2 3 28 28 H 1.08999 * 109.46498 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47123 * 300.00055 * 1 2 3 30 30 H 1.09003 * 109.46358 * 55.00346 * 4 2 1 31 31 H 1.08998 * 109.47331 * 174.99941 * 4 2 1 32 32 H 0.96999 * 119.99947 * 179.97438 * 8 7 5 33 33 H 1.09000 * 109.46892 * 304.99515 * 13 2 1 34 34 H 1.09000 * 109.47046 * 184.99893 * 13 2 1 35 35 H 1.08994 * 109.46310 * 65.82535 * 15 14 13 36 36 H 1.09004 * 109.45281 * 305.84691 * 15 14 13 37 37 H 1.09000 * 109.50480 * 180.88135 * 16 15 14 38 38 H 1.08992 * 109.50737 * 60.75564 * 16 15 14 39 39 H 1.08998 * 109.52297 * 177.56592 * 17 16 15 40 40 H 1.08999 * 109.51925 * 297.75795 * 17 16 15 41 41 H 1.08001 * 125.98934 * 180.11702 * 22 21 20 42 42 H 1.08000 * 126.59169 * 179.81818 * 23 22 21 43 43 H 1.09002 * 109.46133 * 294.17882 * 26 14 13 44 44 H 1.09002 * 109.46165 * 54.15521 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 1.6414 0.0570 2.4766 6 1 1.0806 0.9745 2.3757 7 6 1.9924 -0.4022 3.7283 8 7 2.6749 -1.5197 3.8512 9 14 1.4987 0.5629 5.2496 10 1 0.1711 0.0955 5.7231 11 1 2.5078 0.3521 6.3186 12 1 1.4249 2.0081 4.9167 13 6 2.0400 -0.7212 -1.2493 14 7 1.6514 0.0375 -2.4456 15 6 2.3339 1.3370 -2.4894 16 6 1.7980 2.1567 -3.6654 17 6 2.0386 1.3887 -4.9682 18 6 1.3582 0.0199 -4.8776 19 1 0.2824 0.1550 -4.7656 20 6 1.6397 -0.7658 -6.1323 21 7 0.8167 -1.5984 -6.7090 22 6 1.4007 -2.1119 -7.8019 23 6 2.6353 -1.5834 -7.9018 24 7 2.7874 -0.7294 -6.8430 25 1 3.5728 -0.1971 -6.6410 26 6 1.9068 -0.7378 -3.6664 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6055 -1.7198 1.2951 31 1 3.1264 -0.7994 1.2056 32 1 2.9223 -1.8425 4.7318 33 1 1.6055 -1.7197 -1.2952 34 1 3.1263 -0.7993 -1.2056 35 1 3.4053 1.1805 -2.6140 36 1 2.1511 1.8746 -1.5589 37 1 2.3158 3.1149 -3.7071 38 1 0.7292 2.3253 -3.5345 39 1 1.6197 1.9491 -5.8040 40 1 3.1096 1.2538 -5.1190 41 1 0.9597 -2.8273 -8.4803 42 1 3.3649 -1.7926 -8.6702 43 1 2.9803 -0.8845 -3.7854 44 1 1.4139 -1.7070 -3.5908 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000618887169.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:50 Heat of formation + Delta-G solvation = 36.469511 kcal Electronic energy + Delta-G solvation = -21652.659078 eV Core-core repulsion = 18604.748019 eV Total energy + Delta-G solvation = -3047.911059 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.27375 -39.06788 -35.72009 -33.24325 -32.60902 -31.81345 -31.52346 -28.44877 -26.93384 -26.00929 -23.95989 -23.43965 -22.30213 -21.57565 -20.68712 -19.73657 -18.83867 -18.01274 -16.39792 -15.62190 -15.42029 -14.87196 -14.60501 -14.48319 -14.37873 -14.09705 -13.86181 -13.50511 -13.27964 -13.18917 -12.52188 -12.32447 -12.13832 -11.51869 -11.40169 -11.27395 -10.99814 -10.80569 -10.76414 -10.67717 -10.51659 -10.25455 -10.22648 -10.18312 -10.15916 -9.54912 -9.11538 -8.94443 -8.57046 -8.30975 -8.03596 -5.95958 -3.96943 1.85524 2.91266 2.97950 3.34218 3.40465 3.43506 3.93174 4.35012 4.50111 4.58477 4.71571 4.86485 4.94888 5.16931 5.23217 5.28696 5.38504 5.39891 5.42817 5.57541 5.58772 5.66313 5.78425 5.86981 5.90644 6.00366 6.04709 6.10345 6.21302 6.25122 6.43718 6.55288 6.58099 6.73622 7.04052 7.13926 7.18456 7.23904 7.38556 7.44013 7.71515 7.87828 7.94317 8.04568 8.48608 9.09566 9.66392 11.15645 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.036829 B = 0.003161 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.079082 B = 8856.215442 C = 9161.357713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.080 4.080 3 H 0.056 0.944 4 C 0.027 3.973 5 C -0.511 4.511 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.889 3.111 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.062 3.938 14 N -0.531 5.531 15 C 0.049 3.951 16 C -0.114 4.114 17 C -0.116 4.116 18 C -0.001 4.001 19 H 0.112 0.888 20 C 0.224 3.776 21 N -0.488 5.488 22 C -0.028 4.028 23 C -0.063 4.063 24 N -0.566 5.566 25 H 0.417 0.583 26 C 0.068 3.932 27 H 0.043 0.957 28 H 0.039 0.961 29 H 0.053 0.947 30 H 0.016 0.984 31 H 0.011 0.989 32 H 0.259 0.741 33 H 0.070 0.930 34 H 0.028 0.972 35 H 0.028 0.972 36 H 0.087 0.913 37 H 0.068 0.932 38 H 0.076 0.924 39 H 0.067 0.933 40 H 0.053 0.947 41 H 0.169 0.831 42 H 0.175 0.825 43 H 0.026 0.974 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.646 4.104 -22.727 23.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.099 4.099 3 H 0.074 0.926 4 C -0.011 4.011 5 C -0.549 4.549 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.717 3.283 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.199 1.199 13 C -0.065 4.065 14 N -0.255 5.255 15 C -0.079 4.079 16 C -0.152 4.152 17 C -0.154 4.154 18 C -0.021 4.021 19 H 0.130 0.870 20 C -0.041 4.041 21 N -0.207 5.207 22 C -0.177 4.177 23 C -0.197 4.197 24 N -0.169 5.169 25 H 0.255 0.745 26 C -0.062 4.062 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.072 0.928 30 H 0.034 0.966 31 H 0.030 0.970 32 H 0.069 0.931 33 H 0.088 0.912 34 H 0.046 0.954 35 H 0.046 0.954 36 H 0.105 0.895 37 H 0.087 0.913 38 H 0.095 0.905 39 H 0.085 0.915 40 H 0.072 0.928 41 H 0.186 0.814 42 H 0.192 0.808 43 H 0.044 0.956 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.400 3.838 -22.324 22.655 hybrid contribution 2.017 0.511 0.508 2.142 sum 2.417 4.349 -21.816 22.376 Atomic orbital electron populations 1.21579 0.95650 1.00598 1.00166 1.21232 0.96063 0.98990 0.93629 0.92562 1.19129 0.95831 0.95623 0.90491 1.21231 1.34488 1.08261 0.90964 0.92564 1.25020 0.95359 0.95110 0.99090 1.69969 1.39164 1.21263 1.23332 0.86636 0.78233 0.80418 0.82964 1.20702 1.21363 1.19927 1.22316 0.97541 0.97306 0.89327 1.61905 1.58354 1.03630 1.01627 1.22185 0.95223 0.91048 0.99442 1.21565 1.02689 0.97730 0.93168 1.21663 0.99527 0.95199 0.99051 1.19693 1.03370 0.92188 0.86865 0.87035 1.23265 0.83331 1.00159 0.97310 1.70291 1.30949 1.10960 1.08504 1.22374 0.92949 1.04176 0.98155 1.22740 1.01428 0.99924 0.95594 1.43300 1.15900 1.35691 1.22004 0.74520 1.22018 0.97877 0.97170 0.89102 0.93819 0.94177 0.92842 0.96573 0.97039 0.93128 0.91170 0.95410 0.95387 0.89461 0.91335 0.90514 0.91456 0.92788 0.81398 0.80793 0.95618 0.90151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.38 8.89 37.16 0.33 -2.05 16 2 C -0.08 -1.63 2.26 -90.62 -0.21 -1.83 16 3 H 0.06 1.14 6.23 -51.93 -0.32 0.82 16 4 C 0.03 0.69 4.45 -27.88 -0.12 0.56 16 5 C -0.51 -14.30 8.41 -34.44 -0.29 -14.58 16 6 H 0.06 1.53 7.06 -52.49 -0.37 1.16 16 7 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -27.08 13.29 55.43 0.74 -26.35 16 9 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 13 C 0.06 1.07 4.35 -3.82 -0.02 1.06 16 14 N -0.53 -7.65 4.11 -234.67 -0.96 -8.61 16 15 C 0.05 0.63 5.30 -3.83 -0.02 0.61 16 16 C -0.11 -1.14 6.09 -26.65 -0.16 -1.30 16 17 C -0.12 -1.04 5.07 -26.60 -0.13 -1.18 16 18 C 0.00 -0.01 2.82 -91.69 -0.26 -0.27 16 19 H 0.11 1.37 8.14 -51.93 -0.42 0.95 16 20 C 0.22 2.58 6.87 -155.42 -1.07 1.51 16 21 N -0.49 -6.61 11.25 -10.82 -0.12 -6.73 16 22 C -0.03 -0.30 11.87 -17.81 -0.21 -0.52 16 23 C -0.06 -0.53 12.04 -16.56 -0.20 -0.73 16 24 N -0.57 -4.97 5.91 -10.23 -0.06 -5.03 16 25 H 0.42 2.57 8.09 -40.82 -0.33 2.23 16 26 C 0.07 0.86 4.72 -3.84 -0.02 0.85 16 27 H 0.04 0.76 7.75 -51.93 -0.40 0.36 16 28 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.05 1.11 6.95 -51.93 -0.36 0.74 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 33 H 0.07 1.24 7.98 -51.93 -0.41 0.82 16 34 H 0.03 0.49 8.12 -51.93 -0.42 0.07 16 35 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.09 1.24 6.13 -51.93 -0.32 0.92 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.05 0.42 7.32 -51.93 -0.38 0.04 16 41 H 0.17 1.39 8.06 -52.49 -0.42 0.97 16 42 H 0.17 0.85 8.06 -52.49 -0.42 0.42 16 43 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.08 1.12 8.01 -51.93 -0.42 0.71 16 LS Contribution 345.36 15.07 5.20 5.20 Total: -1.00 -32.04 345.36 -10.23 -42.26 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -7.52 Total: -1.06 kcal Atomic # 6 Polarization: -13.92 SS G_CDS: -2.48 Total: -16.40 kcal Atomic # 7 Polarization: -46.31 SS G_CDS: -0.41 Total: -46.72 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.04 -10.23 -42.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618887169.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.731 kcal (2) G-P(sol) polarization free energy of solvation -32.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds