Wall clock time and date at job start Mon Mar 30 2020 02:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47105 * 2 1 4 4 C 1.53005 * 109.47594 * 119.99621 * 2 1 3 5 5 C 1.50697 * 109.47415 * 295.00819 * 4 2 1 6 6 H 1.08001 * 119.99890 * 359.97438 * 5 4 2 7 7 C 1.37870 * 120.00335 * 179.97438 * 5 4 2 8 8 N 1.31517 * 119.99738 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00085 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47305 * 89.99851 * 9 7 5 11 11 H 1.48508 * 109.47110 * 209.99441 * 9 7 5 12 12 H 1.48489 * 109.47334 * 329.99605 * 9 7 5 13 13 C 1.53001 * 109.47335 * 240.00347 * 2 1 3 14 14 N 1.46897 * 109.47361 * 64.99597 * 13 2 1 15 15 C 1.46854 * 110.99665 * 66.05014 * 14 13 2 16 16 C 1.53037 * 109.51886 * 185.84309 * 15 14 13 17 17 C 1.53126 * 109.27801 * 300.81620 * 16 15 14 18 18 C 1.53124 * 109.15878 * 57.65645 * 17 16 15 19 19 H 1.08999 * 109.50059 * 62.28737 * 18 17 16 20 20 C 1.50696 * 109.50007 * 182.40592 * 18 17 16 21 21 N 1.30501 * 125.64632 * 214.69353 * 20 18 17 22 22 C 1.34133 * 109.25576 * 179.89569 * 21 20 18 23 23 C 1.34670 * 108.01873 * 0.36921 * 22 21 20 24 24 N 1.35038 * 125.65482 * 35.00230 * 20 18 17 25 25 H 0.97006 * 126.39609 * 359.93863 * 24 20 18 26 26 C 1.46844 * 111.00090 * 190.25690 * 14 13 2 27 27 H 1.08998 * 109.47215 * 59.99886 * 1 2 3 28 28 H 1.08999 * 109.46498 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47123 * 300.00055 * 1 2 3 30 30 H 1.09003 * 109.46358 * 55.00346 * 4 2 1 31 31 H 1.08998 * 109.47331 * 174.99941 * 4 2 1 32 32 H 0.96999 * 119.99947 * 179.97438 * 8 7 5 33 33 H 1.09000 * 109.46892 * 304.99515 * 13 2 1 34 34 H 1.09000 * 109.47046 * 184.99893 * 13 2 1 35 35 H 1.08994 * 109.46310 * 65.82535 * 15 14 13 36 36 H 1.09004 * 109.45281 * 305.84691 * 15 14 13 37 37 H 1.09000 * 109.50480 * 180.88135 * 16 15 14 38 38 H 1.08992 * 109.50737 * 60.75564 * 16 15 14 39 39 H 1.08998 * 109.52297 * 177.56592 * 17 16 15 40 40 H 1.08999 * 109.51925 * 297.75795 * 17 16 15 41 41 H 1.08001 * 125.98934 * 180.11702 * 22 21 20 42 42 H 1.08000 * 126.59169 * 179.81818 * 23 22 21 43 43 H 1.09002 * 109.46133 * 294.17882 * 26 14 13 44 44 H 1.09002 * 109.46165 * 54.15521 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 1.6414 0.0570 2.4766 6 1 1.0806 0.9745 2.3757 7 6 1.9924 -0.4022 3.7283 8 7 2.6749 -1.5197 3.8512 9 14 1.4987 0.5629 5.2496 10 1 0.1711 0.0955 5.7231 11 1 2.5078 0.3521 6.3186 12 1 1.4249 2.0081 4.9167 13 6 2.0400 -0.7212 -1.2493 14 7 1.6514 0.0375 -2.4456 15 6 2.3339 1.3370 -2.4894 16 6 1.7980 2.1567 -3.6654 17 6 2.0386 1.3887 -4.9682 18 6 1.3582 0.0199 -4.8776 19 1 0.2824 0.1550 -4.7656 20 6 1.6397 -0.7658 -6.1323 21 7 0.8167 -1.5984 -6.7090 22 6 1.4007 -2.1119 -7.8019 23 6 2.6353 -1.5834 -7.9018 24 7 2.7874 -0.7294 -6.8430 25 1 3.5728 -0.1971 -6.6410 26 6 1.9068 -0.7378 -3.6664 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6055 -1.7198 1.2951 31 1 3.1264 -0.7994 1.2056 32 1 2.9223 -1.8425 4.7318 33 1 1.6055 -1.7197 -1.2952 34 1 3.1263 -0.7993 -1.2056 35 1 3.4053 1.1805 -2.6140 36 1 2.1511 1.8746 -1.5589 37 1 2.3158 3.1149 -3.7071 38 1 0.7292 2.3253 -3.5345 39 1 1.6197 1.9491 -5.8040 40 1 3.1096 1.2538 -5.1190 41 1 0.9597 -2.8273 -8.4803 42 1 3.3649 -1.7926 -8.6702 43 1 2.9803 -0.8845 -3.7854 44 1 1.4139 -1.7070 -3.5908 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000618887169.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:50 Heat of formation + Delta-G solvation = 16.820756 kcal Electronic energy + Delta-G solvation = -21653.511112 eV Core-core repulsion = 18604.748019 eV Total energy + Delta-G solvation = -3048.763093 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.03398 -40.16136 -37.23030 -34.90355 -33.52703 -33.22155 -32.58820 -29.34429 -28.83318 -27.40395 -25.41507 -24.57549 -23.59545 -22.49337 -21.55721 -20.67537 -20.36128 -18.86721 -18.43487 -16.90496 -16.47787 -16.25521 -16.03560 -15.55260 -15.39395 -15.02058 -14.92052 -14.55674 -14.41323 -14.32882 -14.07574 -13.81122 -13.39597 -13.23462 -12.89506 -12.72405 -12.55061 -12.34430 -12.20246 -12.05759 -11.83130 -11.60827 -11.45731 -11.27771 -11.02136 -11.00460 -10.99676 -10.84098 -10.52030 -9.33620 -9.22320 -8.16556 -6.25590 1.12598 1.40839 1.42004 1.52751 2.15341 2.25318 2.42822 2.91148 3.17008 3.46015 3.75037 3.85381 4.07375 4.08601 4.26546 4.28407 4.34139 4.43096 4.52398 4.53979 4.59793 4.66178 4.67697 4.74529 4.87496 4.90594 5.00033 5.00893 5.05676 5.13015 5.18806 5.24153 5.29899 5.42374 5.49650 5.52537 5.57414 5.81703 5.83573 5.90145 6.09527 6.23210 6.32593 6.51405 6.90545 7.18111 7.42718 8.95668 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.036829 B = 0.003161 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.079082 B = 8856.215442 C = 9161.357713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.070 4.070 3 H 0.059 0.941 4 C 0.033 3.967 5 C -0.526 4.526 6 H 0.062 0.938 7 C -0.003 4.003 8 N -0.937 5.937 9 Si 0.961 3.039 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.262 1.262 13 C 0.074 3.926 14 N -0.533 5.533 15 C 0.046 3.954 16 C -0.107 4.107 17 C -0.108 4.108 18 C 0.009 3.991 19 H 0.095 0.905 20 C 0.207 3.793 21 N -0.532 5.532 22 C -0.063 4.063 23 C -0.040 4.040 24 N -0.556 5.556 25 H 0.431 0.569 26 C 0.073 3.927 27 H 0.066 0.934 28 H 0.032 0.968 29 H 0.038 0.962 30 H -0.013 1.013 31 H -0.015 1.015 32 H 0.261 0.739 33 H 0.061 0.939 34 H 0.020 0.980 35 H 0.032 0.968 36 H 0.072 0.928 37 H 0.091 0.909 38 H 0.071 0.929 39 H 0.081 0.919 40 H 0.071 0.929 41 H 0.182 0.818 42 H 0.215 0.785 43 H 0.031 0.969 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.137 5.884 -24.307 25.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.089 4.089 3 H 0.077 0.923 4 C -0.005 4.005 5 C -0.565 4.565 6 H 0.080 0.920 7 C -0.200 4.200 8 N -0.578 5.578 9 Si 0.786 3.214 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.186 1.186 13 C -0.054 4.054 14 N -0.258 5.258 15 C -0.082 4.082 16 C -0.144 4.144 17 C -0.146 4.146 18 C -0.012 4.012 19 H 0.114 0.886 20 C -0.058 4.058 21 N -0.252 5.252 22 C -0.210 4.210 23 C -0.174 4.174 24 N -0.160 5.160 25 H 0.271 0.729 26 C -0.056 4.056 27 H 0.085 0.915 28 H 0.051 0.949 29 H 0.057 0.943 30 H 0.006 0.994 31 H 0.003 0.997 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.039 0.961 35 H 0.050 0.950 36 H 0.090 0.910 37 H 0.109 0.891 38 H 0.090 0.910 39 H 0.100 0.900 40 H 0.089 0.911 41 H 0.199 0.801 42 H 0.231 0.769 43 H 0.049 0.951 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.896 5.642 -23.920 24.593 hybrid contribution 1.896 -0.105 0.932 2.115 sum 2.791 5.538 -22.988 23.810 Atomic orbital electron populations 1.21470 0.94753 1.00238 1.00504 1.21025 0.96630 0.98601 0.92621 0.92263 1.19015 0.94000 0.94635 0.92838 1.21632 1.34271 1.08561 0.91990 0.91994 1.25956 0.95281 0.96113 1.02672 1.70108 1.40415 1.23009 1.24234 0.85508 0.77945 0.79367 0.78621 1.19995 1.20972 1.18597 1.22012 0.96814 0.96897 0.89692 1.61843 1.58705 1.04143 1.01059 1.22268 0.95530 0.90174 1.00222 1.21533 1.02472 0.98222 0.92220 1.21632 1.00445 0.93635 0.98908 1.19527 1.02527 0.93148 0.85949 0.88641 1.23134 0.84264 1.00633 0.97754 1.70207 1.32788 1.12146 1.10033 1.22795 0.94320 1.05570 0.98330 1.23334 1.01088 0.97767 0.95260 1.43283 1.15624 1.35526 1.21550 0.72853 1.21962 0.98076 0.96510 0.89081 0.91502 0.94884 0.94279 0.99428 0.99661 0.92986 0.92024 0.96127 0.94996 0.90968 0.89094 0.91049 0.89994 0.91050 0.80096 0.76870 0.95057 0.91992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.38 8.89 71.98 0.64 -3.74 16 2 C -0.07 -2.89 2.26 -10.79 -0.02 -2.91 16 3 H 0.06 2.42 6.23 -2.38 -0.01 2.40 16 4 C 0.03 1.74 4.45 29.85 0.13 1.87 16 5 C -0.53 -29.94 8.41 25.60 0.22 -29.73 16 6 H 0.06 3.38 7.06 -2.91 -0.02 3.36 16 7 C 0.00 -0.19 5.46 84.65 0.46 0.28 16 8 N -0.94 -57.81 13.29 21.45 0.28 -57.53 16 9 Si 0.96 44.73 29.54 68.60 2.03 46.75 16 10 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 11 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 12 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 13 C 0.07 2.60 4.35 86.30 0.38 2.98 16 14 N -0.53 -15.13 4.11 -896.36 -3.68 -18.81 16 15 C 0.05 1.11 5.30 86.32 0.46 1.57 16 16 C -0.11 -1.87 6.09 30.65 0.19 -1.68 16 17 C -0.11 -1.64 5.07 30.68 0.16 -1.49 16 18 C 0.01 0.19 2.82 -11.49 -0.03 0.16 16 19 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 20 C 0.21 4.50 6.87 138.13 0.95 5.45 16 21 N -0.53 -14.18 11.25 -188.13 -2.12 -16.30 16 22 C -0.06 -1.27 11.87 83.52 0.99 -0.28 16 23 C -0.04 -0.56 12.04 83.09 1.00 0.44 16 24 N -0.56 -8.30 5.91 -186.28 -1.10 -9.40 16 25 H 0.43 3.84 8.09 -92.70 -0.75 3.09 16 26 C 0.07 1.83 4.72 86.33 0.41 2.23 16 27 H 0.07 2.28 7.75 -2.39 -0.02 2.26 16 28 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.04 1.61 6.95 -2.39 -0.02 1.59 16 30 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 31 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 32 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 33 H 0.06 2.26 7.98 -2.39 -0.02 2.24 16 34 H 0.02 0.75 8.12 -2.39 -0.02 0.73 16 35 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.07 1.98 6.13 -2.38 -0.01 1.96 16 37 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.08 1.07 8.14 -2.39 -0.02 1.06 16 40 H 0.07 0.86 7.32 -2.39 -0.02 0.84 16 41 H 0.18 2.84 8.06 -2.91 -0.02 2.81 16 42 H 0.21 1.13 8.06 -2.91 -0.02 1.11 16 43 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.06 1.77 8.01 -2.39 -0.02 1.76 16 Total: -1.00 -70.96 345.36 1.55 -69.41 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: 0.22 Total: 10.72 kcal Atomic # 6 Polarization: -30.77 SS G_CDS: 5.92 Total: -24.85 kcal Atomic # 7 Polarization: -95.42 SS G_CDS: -6.62 Total: -102.04 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.75 kcal Total: -70.96 1.55 -69.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618887169.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.234 kcal (2) G-P(sol) polarization free energy of solvation -70.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds