Wall clock time and date at job start Mon Mar 30 2020 02:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47218 * 2 1 4 4 C 1.53001 * 109.47268 * 239.99864 * 2 1 3 5 5 C 1.50705 * 109.47034 * 65.00089 * 4 2 1 6 6 H 1.07999 * 119.99727 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00127 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99772 * 359.97438 * 7 5 4 9 9 Si 1.86790 * 120.00079 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47287 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47310 * 119.99869 * 9 7 5 12 12 H 1.48497 * 109.47251 * 239.99720 * 9 7 5 13 13 C 1.53000 * 109.47056 * 120.00010 * 2 1 3 14 14 N 1.46901 * 109.47158 * 295.00201 * 13 2 1 15 15 C 1.46847 * 111.00144 * 170.00079 * 14 13 2 16 16 C 1.53044 * 109.51335 * 185.83239 * 15 14 13 17 17 C 1.53117 * 109.27792 * 300.82256 * 16 15 14 18 18 N 1.46494 * 109.52123 * 177.55958 * 17 16 15 19 19 C 1.36883 * 126.39496 * 120.00004 * 18 17 16 20 20 C 1.34667 * 106.81748 * 179.97438 * 19 18 17 21 21 N 1.34131 * 108.02020 * 0.02562 * 20 19 18 22 22 C 1.30496 * 109.25494 * 359.72010 * 21 20 19 23 23 C 1.53127 * 109.15989 * 57.65607 * 17 16 15 24 24 C 1.46830 * 110.98168 * 294.21498 * 14 13 2 25 25 H 1.08997 * 109.46699 * 300.00218 * 1 2 3 26 26 H 1.09003 * 109.46767 * 59.99954 * 1 2 3 27 27 H 1.09000 * 109.47218 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47350 * 185.00160 * 4 2 1 29 29 H 1.09001 * 109.46935 * 305.00535 * 4 2 1 30 30 H 0.96995 * 120.00196 * 180.02562 * 8 7 5 31 31 H 1.09001 * 109.47466 * 175.00137 * 13 2 1 32 32 H 1.09002 * 109.47083 * 54.99552 * 13 2 1 33 33 H 1.09002 * 109.46448 * 65.81961 * 15 14 13 34 34 H 1.08994 * 109.45958 * 305.84326 * 15 14 13 35 35 H 1.09001 * 109.49858 * 60.76701 * 16 15 14 36 36 H 1.09002 * 109.49779 * 180.84687 * 16 15 14 37 37 H 1.09004 * 109.52347 * 297.75632 * 17 16 15 38 38 H 1.07996 * 126.59408 * 359.96833 * 19 18 17 39 39 H 1.08005 * 125.99460 * 179.97438 * 20 19 18 40 40 H 1.08001 * 125.64926 * 180.28997 * 22 21 20 41 41 H 1.08997 * 109.50037 * 62.28538 * 23 17 16 42 42 H 1.09000 * 109.49970 * 182.40199 * 23 17 16 43 43 H 1.08995 * 109.46742 * 54.13906 * 24 14 13 44 44 H 1.09004 * 109.45381 * 294.16241 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0808 0.9746 -2.3757 7 6 1.9925 -0.4022 -3.7283 8 7 2.6756 -1.5193 -3.8512 9 14 1.4989 0.5628 -5.2496 10 1 0.7424 1.7744 -4.8434 11 1 2.7172 0.9667 -5.9965 12 1 0.6443 -0.2856 -6.1184 13 6 2.0400 -0.7213 1.2492 14 7 1.6514 0.0374 2.4456 15 6 1.9123 -0.7355 3.6667 16 6 1.3638 0.0220 4.8782 17 6 2.0395 1.3933 4.9653 18 7 1.4765 2.1459 6.0889 19 6 2.1631 2.6215 7.1734 20 6 1.2665 3.2500 7.9573 21 7 0.0650 3.1601 7.3679 22 6 0.1841 2.5050 6.2456 23 6 1.7932 2.1586 3.6621 24 6 2.3292 1.3392 2.4859 25 1 -0.3632 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1264 -0.7995 -1.2056 29 1 1.6054 -1.7198 -1.2951 30 1 2.9229 -1.8423 -4.7317 31 1 3.1264 -0.7995 1.2057 32 1 1.6053 -1.7198 1.2952 33 1 2.9866 -0.8783 3.7835 34 1 1.4228 -1.7065 3.5934 35 1 0.2873 0.1530 4.7685 36 1 1.5710 -0.5447 5.7859 37 1 3.1114 1.2624 5.1138 38 1 3.2207 2.5134 7.3638 39 1 1.4776 3.7398 8.8965 40 1 -0.6184 2.2844 5.5573 41 1 0.7235 2.3232 3.5334 42 1 2.3077 3.1188 3.7012 43 1 2.1426 1.8749 1.5552 44 1 3.4015 1.1866 2.6084 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000618887257.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:06 Heat of formation + Delta-G solvation = 47.848284 kcal Electronic energy + Delta-G solvation = -21625.657895 eV Core-core repulsion = 18578.240256 eV Total energy + Delta-G solvation = -3047.417639 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.25535 -39.21732 -36.04960 -33.99539 -32.21577 -31.14475 -30.65067 -29.40226 -26.93842 -25.96190 -24.02691 -23.45145 -22.44375 -21.61803 -21.08636 -19.62790 -18.88236 -17.72691 -16.46809 -15.59002 -15.39132 -15.09236 -14.76150 -14.61187 -14.38220 -14.03932 -13.83779 -13.61476 -13.49612 -13.22855 -12.72773 -12.37871 -12.30366 -11.75589 -11.50560 -11.48758 -11.34347 -11.04122 -10.92541 -10.88019 -10.73702 -10.32256 -10.28737 -10.09662 -9.74248 -9.59366 -9.18655 -8.99065 -8.65787 -8.36676 -8.18435 -6.01421 -4.02572 1.92726 2.58435 3.05784 3.29436 3.37415 3.41124 3.91814 4.20409 4.42336 4.45451 4.58090 4.60874 4.70938 4.91305 5.10735 5.17316 5.23035 5.34224 5.34932 5.38326 5.42038 5.53294 5.61858 5.69142 5.76596 5.80744 5.91780 5.98676 6.09658 6.18389 6.32839 6.46879 6.59738 6.62551 6.93326 7.04631 7.05206 7.14736 7.25541 7.31103 7.64939 7.80150 7.95344 7.98602 8.42403 9.04076 9.61222 11.10155 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.038620 B = 0.003062 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.836381 B = 9142.726124 C = 9429.925564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.081 4.081 3 H 0.056 0.944 4 C 0.027 3.973 5 C -0.512 4.512 6 H 0.057 0.943 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.284 1.284 13 C 0.061 3.939 14 N -0.535 5.535 15 C 0.058 3.942 16 C -0.122 4.122 17 C 0.133 3.867 18 N -0.450 5.450 19 C -0.060 4.060 20 C -0.035 4.035 21 N -0.500 5.500 22 C 0.187 3.813 23 C -0.122 4.122 24 C 0.055 3.945 25 H 0.041 0.959 26 H 0.053 0.947 27 H 0.039 0.961 28 H 0.012 0.988 29 H 0.016 0.984 30 H 0.259 0.741 31 H 0.030 0.970 32 H 0.071 0.929 33 H 0.033 0.967 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.071 0.929 37 H 0.095 0.905 38 H 0.170 0.830 39 H 0.166 0.834 40 H 0.201 0.799 41 H 0.081 0.919 42 H 0.072 0.928 43 H 0.093 0.907 44 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.288 4.514 19.818 20.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.100 4.100 3 H 0.074 0.926 4 C -0.011 4.011 5 C -0.550 4.550 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.717 3.283 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.066 4.066 14 N -0.260 5.260 15 C -0.071 4.071 16 C -0.160 4.160 17 C 0.030 3.970 18 N -0.132 5.132 19 C -0.193 4.193 20 C -0.183 4.183 21 N -0.218 5.218 22 C -0.096 4.096 23 C -0.161 4.161 24 C -0.073 4.073 25 H 0.060 0.940 26 H 0.072 0.928 27 H 0.058 0.942 28 H 0.030 0.970 29 H 0.034 0.966 30 H 0.069 0.931 31 H 0.048 0.952 32 H 0.089 0.911 33 H 0.051 0.949 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.090 0.910 37 H 0.113 0.887 38 H 0.187 0.813 39 H 0.184 0.816 40 H 0.218 0.782 41 H 0.100 0.900 42 H 0.091 0.909 43 H 0.112 0.888 44 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -0.807 4.724 19.867 20.437 hybrid contribution 1.564 -0.102 -1.206 1.977 sum 0.757 4.622 18.662 19.240 Atomic orbital electron populations 1.21580 0.95670 1.00554 1.00169 1.21240 0.96033 0.98999 0.93713 0.92588 1.19133 0.95871 0.95610 0.90484 1.21259 1.34554 1.08262 0.90941 0.92522 1.25021 0.95325 0.95088 0.99131 1.69971 1.39137 1.21260 1.23308 0.86581 0.78257 0.80157 0.83291 1.19729 1.21118 1.21066 1.22326 0.97715 0.97259 0.89262 1.61991 1.58380 1.03520 1.02080 1.22016 0.98540 0.97218 0.89315 1.21960 1.01822 0.93767 0.98465 1.21654 0.98730 0.91793 0.84788 1.45779 1.08911 1.40897 1.17622 1.22735 0.99482 1.06246 0.90866 1.22278 0.88943 1.05365 1.01699 1.70312 1.25660 1.18948 1.06917 1.24906 0.86401 1.00524 0.97720 1.21980 1.03513 0.98309 0.92268 1.22088 0.95493 0.91014 0.98723 0.93959 0.92763 0.94186 0.96989 0.96569 0.93136 0.95192 0.91076 0.94921 0.89941 0.90019 0.91035 0.88650 0.81269 0.81645 0.78190 0.90004 0.90919 0.88844 0.94875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.25 8.89 37.16 0.33 -1.92 16 2 C -0.08 -1.55 2.26 -90.62 -0.20 -1.76 16 3 H 0.06 1.08 6.22 -51.93 -0.32 0.76 16 4 C 0.03 0.65 4.45 -27.88 -0.12 0.53 16 5 C -0.51 -13.98 8.41 -34.44 -0.29 -14.27 16 6 H 0.06 1.52 7.06 -52.49 -0.37 1.14 16 7 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -26.57 13.29 55.43 0.74 -25.83 16 9 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 10 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 C 0.06 0.96 4.35 -3.82 -0.02 0.95 16 14 N -0.54 -6.77 4.11 -234.68 -0.96 -7.73 16 15 C 0.06 0.59 5.46 -3.83 -0.02 0.57 16 16 C -0.12 -1.06 5.46 -26.65 -0.15 -1.20 16 17 C 0.13 1.15 2.93 -67.81 -0.20 0.95 16 18 N -0.45 -4.35 2.62 -111.33 -0.29 -4.64 16 19 C -0.06 -0.56 11.55 -16.56 -0.19 -0.75 16 20 C -0.03 -0.37 11.87 -17.81 -0.21 -0.58 16 21 N -0.50 -6.42 11.25 -14.66 -0.16 -6.59 16 22 C 0.19 2.03 11.46 -90.38 -1.04 1.00 16 23 C -0.12 -1.17 5.45 -26.65 -0.15 -1.31 16 24 C 0.06 0.64 5.29 -3.84 -0.02 0.62 16 25 H 0.04 0.69 7.75 -51.93 -0.40 0.28 16 26 H 0.05 1.08 6.95 -51.93 -0.36 0.72 16 27 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 31 H 0.03 0.48 8.12 -51.93 -0.42 0.06 16 32 H 0.07 1.12 7.99 -51.93 -0.41 0.71 16 33 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.08 0.84 8.01 -51.93 -0.42 0.42 16 35 H 0.08 0.76 7.89 -51.93 -0.41 0.35 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.10 0.76 8.09 -51.93 -0.42 0.34 16 38 H 0.17 1.10 8.06 -52.49 -0.42 0.68 16 39 H 0.17 1.38 8.06 -52.48 -0.42 0.96 16 40 H 0.20 1.75 8.06 -52.49 -0.42 1.33 16 41 H 0.08 0.82 7.87 -51.93 -0.41 0.42 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.09 1.23 6.12 -51.93 -0.32 0.91 16 44 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 LS Contribution 346.95 15.07 5.23 5.23 Total: -1.00 -30.82 346.95 -10.48 -41.29 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -7.63 Total: -2.37 kcal Atomic # 6 Polarization: -13.36 SS G_CDS: -2.37 Total: -15.73 kcal Atomic # 7 Polarization: -44.11 SS G_CDS: -0.69 Total: -44.80 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.82 -10.48 -41.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618887257.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.142 kcal (2) G-P(sol) polarization free energy of solvation -30.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds