Wall clock time and date at job start Mon Mar 30 2020 02:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47218 * 2 1 4 4 C 1.53001 * 109.47268 * 239.99864 * 2 1 3 5 5 C 1.50705 * 109.47034 * 65.00089 * 4 2 1 6 6 H 1.07999 * 119.99727 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00127 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99772 * 359.97438 * 7 5 4 9 9 Si 1.86790 * 120.00079 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47287 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47310 * 119.99869 * 9 7 5 12 12 H 1.48497 * 109.47251 * 239.99720 * 9 7 5 13 13 C 1.53000 * 109.47056 * 120.00010 * 2 1 3 14 14 N 1.46901 * 109.47158 * 295.00201 * 13 2 1 15 15 C 1.46847 * 111.00144 * 170.00079 * 14 13 2 16 16 C 1.53044 * 109.51335 * 185.83239 * 15 14 13 17 17 C 1.53117 * 109.27792 * 300.82256 * 16 15 14 18 18 N 1.46494 * 109.52123 * 177.55958 * 17 16 15 19 19 C 1.36883 * 126.39496 * 120.00004 * 18 17 16 20 20 C 1.34667 * 106.81748 * 179.97438 * 19 18 17 21 21 N 1.34131 * 108.02020 * 0.02562 * 20 19 18 22 22 C 1.30496 * 109.25494 * 359.72010 * 21 20 19 23 23 C 1.53127 * 109.15989 * 57.65607 * 17 16 15 24 24 C 1.46830 * 110.98168 * 294.21498 * 14 13 2 25 25 H 1.08997 * 109.46699 * 300.00218 * 1 2 3 26 26 H 1.09003 * 109.46767 * 59.99954 * 1 2 3 27 27 H 1.09000 * 109.47218 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47350 * 185.00160 * 4 2 1 29 29 H 1.09001 * 109.46935 * 305.00535 * 4 2 1 30 30 H 0.96995 * 120.00196 * 180.02562 * 8 7 5 31 31 H 1.09001 * 109.47466 * 175.00137 * 13 2 1 32 32 H 1.09002 * 109.47083 * 54.99552 * 13 2 1 33 33 H 1.09002 * 109.46448 * 65.81961 * 15 14 13 34 34 H 1.08994 * 109.45958 * 305.84326 * 15 14 13 35 35 H 1.09001 * 109.49858 * 60.76701 * 16 15 14 36 36 H 1.09002 * 109.49779 * 180.84687 * 16 15 14 37 37 H 1.09004 * 109.52347 * 297.75632 * 17 16 15 38 38 H 1.07996 * 126.59408 * 359.96833 * 19 18 17 39 39 H 1.08005 * 125.99460 * 179.97438 * 20 19 18 40 40 H 1.08001 * 125.64926 * 180.28997 * 22 21 20 41 41 H 1.08997 * 109.50037 * 62.28538 * 23 17 16 42 42 H 1.09000 * 109.49970 * 182.40199 * 23 17 16 43 43 H 1.08995 * 109.46742 * 54.13906 * 24 14 13 44 44 H 1.09004 * 109.45381 * 294.16241 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0808 0.9746 -2.3757 7 6 1.9925 -0.4022 -3.7283 8 7 2.6756 -1.5193 -3.8512 9 14 1.4989 0.5628 -5.2496 10 1 0.7424 1.7744 -4.8434 11 1 2.7172 0.9667 -5.9965 12 1 0.6443 -0.2856 -6.1184 13 6 2.0400 -0.7213 1.2492 14 7 1.6514 0.0374 2.4456 15 6 1.9123 -0.7355 3.6667 16 6 1.3638 0.0220 4.8782 17 6 2.0395 1.3933 4.9653 18 7 1.4765 2.1459 6.0889 19 6 2.1631 2.6215 7.1734 20 6 1.2665 3.2500 7.9573 21 7 0.0650 3.1601 7.3679 22 6 0.1841 2.5050 6.2456 23 6 1.7932 2.1586 3.6621 24 6 2.3292 1.3392 2.4859 25 1 -0.3632 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1264 -0.7995 -1.2056 29 1 1.6054 -1.7198 -1.2951 30 1 2.9229 -1.8423 -4.7317 31 1 3.1264 -0.7995 1.2057 32 1 1.6053 -1.7198 1.2952 33 1 2.9866 -0.8783 3.7835 34 1 1.4228 -1.7065 3.5934 35 1 0.2873 0.1530 4.7685 36 1 1.5710 -0.5447 5.7859 37 1 3.1114 1.2624 5.1138 38 1 3.2207 2.5134 7.3638 39 1 1.4776 3.7398 8.8965 40 1 -0.6184 2.2844 5.5573 41 1 0.7235 2.3232 3.5334 42 1 2.3077 3.1188 3.7012 43 1 2.1426 1.8749 1.5552 44 1 3.4015 1.1866 2.6084 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000618887257.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:06 Heat of formation + Delta-G solvation = 31.563266 kcal Electronic energy + Delta-G solvation = -21626.364066 eV Core-core repulsion = 18578.240256 eV Total energy + Delta-G solvation = -3048.123810 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.00546 -40.18099 -37.36436 -35.36330 -33.97829 -31.96851 -31.67670 -30.17899 -28.81941 -27.20344 -25.42641 -24.30448 -23.85240 -22.45854 -21.89176 -20.52777 -20.32041 -18.58969 -18.38638 -16.81656 -16.33396 -16.25000 -16.01533 -15.75151 -15.43247 -15.04879 -14.76545 -14.59694 -14.38339 -14.33888 -14.10711 -13.90628 -13.39600 -13.22529 -12.98212 -12.78345 -12.57507 -12.41690 -12.25893 -12.23308 -11.99532 -11.84327 -11.71828 -11.31383 -11.03740 -10.90269 -10.84519 -10.53295 -10.44961 -9.39786 -9.22650 -8.17402 -6.25813 1.19398 1.39417 1.40683 1.52923 1.86218 2.26838 2.41908 2.92171 3.16518 3.49023 3.67195 3.85601 3.90602 4.02909 4.04596 4.20649 4.29882 4.36302 4.37822 4.52889 4.55921 4.63342 4.66704 4.75896 4.79059 4.88017 4.90902 4.96129 4.97679 5.05768 5.08577 5.19476 5.30826 5.44850 5.50035 5.53714 5.57609 5.82899 5.88358 5.90900 6.08953 6.22671 6.31300 6.33149 6.90894 7.19305 7.42582 8.94783 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.038620 B = 0.003062 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.836381 B = 9142.726124 C = 9429.925564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.072 4.072 3 H 0.055 0.945 4 C 0.032 3.968 5 C -0.525 4.525 6 H 0.060 0.940 7 C -0.002 4.002 8 N -0.935 5.935 9 Si 0.958 3.042 10 H -0.262 1.262 11 H -0.280 1.280 12 H -0.281 1.281 13 C 0.074 3.926 14 N -0.537 5.537 15 C 0.058 3.942 16 C -0.112 4.112 17 C 0.139 3.861 18 N -0.448 5.448 19 C -0.052 4.052 20 C -0.059 4.059 21 N -0.538 5.538 22 C 0.177 3.823 23 C -0.112 4.112 24 C 0.056 3.944 25 H 0.066 0.934 26 H 0.034 0.966 27 H 0.035 0.965 28 H -0.014 1.014 29 H -0.010 1.010 30 H 0.261 0.739 31 H 0.022 0.978 32 H 0.069 0.931 33 H 0.040 0.960 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.111 0.889 38 H 0.200 0.800 39 H 0.180 0.820 40 H 0.214 0.786 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.075 0.925 44 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.320 5.352 20.901 21.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.091 4.091 3 H 0.073 0.927 4 C -0.006 4.006 5 C -0.563 4.563 6 H 0.078 0.922 7 C -0.199 4.199 8 N -0.577 5.577 9 Si 0.783 3.217 10 H -0.186 1.186 11 H -0.206 1.206 12 H -0.207 1.207 13 C -0.054 4.054 14 N -0.262 5.262 15 C -0.070 4.070 16 C -0.150 4.150 17 C 0.037 3.963 18 N -0.130 5.130 19 C -0.186 4.186 20 C -0.206 4.206 21 N -0.257 5.257 22 C -0.106 4.106 23 C -0.151 4.151 24 C -0.073 4.073 25 H 0.085 0.915 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.004 0.996 29 H 0.008 0.992 30 H 0.070 0.930 31 H 0.041 0.959 32 H 0.088 0.912 33 H 0.058 0.942 34 H 0.103 0.897 35 H 0.096 0.904 36 H 0.102 0.898 37 H 0.129 0.871 38 H 0.216 0.784 39 H 0.198 0.802 40 H 0.231 0.769 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.093 0.907 44 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -0.779 5.573 20.971 21.713 hybrid contribution 1.578 -0.372 -1.504 2.211 sum 0.799 5.201 19.467 20.165 Atomic orbital electron populations 1.21468 0.94772 1.00337 1.00350 1.21033 0.96601 0.98493 0.92939 0.92663 1.19026 0.94066 0.94708 0.92785 1.21669 1.34132 1.08457 0.92089 0.92199 1.25918 0.95356 0.96082 1.02574 1.70098 1.40444 1.22952 1.24163 0.85502 0.78045 0.78959 0.79197 1.18595 1.20614 1.20652 1.22006 0.97016 0.97041 0.89328 1.61922 1.58564 1.03828 1.01855 1.22071 0.99204 0.97225 0.88510 1.21866 1.01461 0.93697 0.98025 1.21637 0.99478 0.91283 0.83940 1.45819 1.08603 1.40730 1.17833 1.23204 1.00575 1.04786 0.90006 1.22671 0.88804 1.06363 1.02774 1.70275 1.27111 1.20216 1.08119 1.25181 0.87290 1.00459 0.97622 1.21859 1.03148 0.98227 0.91856 1.22069 0.95844 0.90473 0.98886 0.91468 0.94716 0.94574 0.99603 0.99159 0.92995 0.95934 0.91205 0.94176 0.89733 0.90397 0.89815 0.87143 0.78352 0.80247 0.76924 0.90432 0.90357 0.90651 0.94422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.05 8.89 71.98 0.64 -3.41 16 2 C -0.07 -2.76 2.26 -10.79 -0.02 -2.79 16 3 H 0.06 2.13 6.22 -2.39 -0.01 2.12 16 4 C 0.03 1.61 4.45 29.85 0.13 1.75 16 5 C -0.53 -29.13 8.41 25.60 0.22 -28.91 16 6 H 0.06 3.21 7.06 -2.91 -0.02 3.19 16 7 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 8 N -0.94 -56.52 13.29 21.45 0.28 -56.24 16 9 Si 0.96 44.03 29.54 68.60 2.03 46.06 16 10 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 11 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 12 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 13 C 0.07 2.28 4.35 86.30 0.38 2.66 16 14 N -0.54 -12.68 4.11 -896.39 -3.68 -16.36 16 15 C 0.06 1.05 5.46 86.33 0.47 1.52 16 16 C -0.11 -1.63 5.46 30.65 0.17 -1.46 16 17 C 0.14 1.98 2.93 45.07 0.13 2.11 16 18 N -0.45 -7.51 2.62 -506.14 -1.33 -8.83 16 19 C -0.05 -0.84 11.55 83.09 0.96 0.12 16 20 C -0.06 -1.18 11.87 83.52 0.99 -0.19 16 21 N -0.54 -13.26 11.25 -200.31 -2.25 -15.52 16 22 C 0.18 3.56 11.46 180.26 2.07 5.62 16 23 C -0.11 -1.88 5.45 30.65 0.17 -1.72 16 24 C 0.06 1.20 5.29 86.33 0.46 1.66 16 25 H 0.07 2.08 7.75 -2.39 -0.02 2.06 16 26 H 0.03 1.36 6.95 -2.39 -0.02 1.35 16 27 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 28 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 29 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 30 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 31 H 0.02 0.73 8.12 -2.39 -0.02 0.71 16 32 H 0.07 2.18 7.99 -2.39 -0.02 2.16 16 33 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.08 1.52 8.01 -2.39 -0.02 1.50 16 35 H 0.08 1.23 7.89 -2.39 -0.02 1.22 16 36 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.11 1.32 8.09 -2.38 -0.02 1.30 16 38 H 0.20 1.84 8.06 -2.91 -0.02 1.81 16 39 H 0.18 2.76 8.06 -2.91 -0.02 2.74 16 40 H 0.21 3.41 8.06 -2.91 -0.02 3.38 16 41 H 0.08 1.39 7.87 -2.39 -0.02 1.38 16 42 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.08 1.91 6.12 -2.39 -0.01 1.89 16 44 H 0.04 0.78 8.14 -2.38 -0.02 0.77 16 Total: -1.00 -66.90 346.95 3.20 -63.70 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: 0.94 Total: 9.88 kcal Atomic # 6 Polarization: -29.90 SS G_CDS: 7.21 Total: -22.69 kcal Atomic # 7 Polarization: -89.97 SS G_CDS: -6.98 Total: -96.95 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -66.90 3.20 -63.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618887257.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.261 kcal (2) G-P(sol) polarization free energy of solvation -66.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds