Wall clock time and date at job start Mon Mar 30 2020 02:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47378 * 2 1 4 4 C 1.53007 * 109.46714 * 119.99792 * 2 1 3 5 5 C 1.50702 * 109.47019 * 294.99717 * 4 2 1 6 6 H 1.07994 * 120.00076 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99711 * 180.02562 * 5 4 2 8 8 N 1.31514 * 120.00036 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99928 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47375 * 89.99258 * 9 7 5 11 11 H 1.48501 * 109.47311 * 209.99749 * 9 7 5 12 12 H 1.48502 * 109.47067 * 329.99620 * 9 7 5 13 13 C 1.52993 * 109.47130 * 239.99132 * 2 1 3 14 14 N 1.46908 * 109.46656 * 62.10088 * 13 2 1 15 15 C 1.46846 * 110.99995 * 52.06037 * 14 13 2 16 16 C 1.53035 * 109.51986 * 185.84140 * 15 14 13 17 17 C 1.53119 * 109.28104 * 300.81655 * 16 15 14 18 18 N 1.46500 * 109.52712 * 177.56040 * 17 16 15 19 19 C 1.36887 * 126.39579 * 120.32004 * 18 17 16 20 20 C 1.34667 * 106.81233 * 180.02562 * 19 18 17 21 21 N 1.34125 * 108.02278 * 359.97438 * 20 19 18 22 22 C 1.30492 * 109.25618 * 359.72376 * 21 20 19 23 23 C 1.53128 * 109.15716 * 57.65796 * 17 16 15 24 24 C 1.46844 * 110.99886 * 176.26935 * 14 13 2 25 25 H 1.08995 * 109.46589 * 59.99944 * 1 2 3 26 26 H 1.08990 * 109.47239 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46720 * 300.00507 * 1 2 3 28 28 H 1.08993 * 109.47131 * 54.99721 * 4 2 1 29 29 H 1.09001 * 109.46845 * 174.99801 * 4 2 1 30 30 H 0.97000 * 119.99970 * 180.02562 * 8 7 5 31 31 H 1.08993 * 109.47921 * 302.10385 * 13 2 1 32 32 H 1.09001 * 109.47095 * 182.09577 * 13 2 1 33 33 H 1.08996 * 109.46456 * 305.85436 * 15 14 13 34 34 H 1.09001 * 109.46388 * 65.82790 * 15 14 13 35 35 H 1.08999 * 109.50508 * 180.88343 * 16 15 14 36 36 H 1.08998 * 109.54270 * 60.77711 * 16 15 14 37 37 H 1.09000 * 109.52482 * 297.75987 * 17 16 15 38 38 H 1.08001 * 126.59122 * 359.96569 * 19 18 17 39 39 H 1.08001 * 125.98514 * 179.97438 * 20 19 18 40 40 H 1.08002 * 125.64721 * 180.29224 * 22 21 20 41 41 H 1.09007 * 109.50299 * 182.40878 * 23 17 16 42 42 H 1.08989 * 109.53744 * 62.30642 * 23 17 16 43 43 H 1.08998 * 109.46889 * 294.17751 * 24 14 13 44 44 H 1.09004 * 109.46624 * 54.15643 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2494 5 6 1.6413 0.0572 2.4766 6 1 1.0800 0.9743 2.3757 7 6 1.9931 -0.4016 3.7284 8 7 2.6762 -1.5187 3.8513 9 14 1.4984 0.5629 5.2497 10 1 0.1714 0.0939 5.7233 11 1 2.5078 0.3535 6.3185 12 1 1.4226 2.0081 4.9166 13 6 2.0400 -0.7214 -1.2491 14 7 1.5922 -0.0003 -2.4481 15 6 1.9438 1.4232 -2.3681 16 6 1.3372 2.1675 -3.5597 17 6 1.8736 1.5625 -4.8600 18 7 1.2519 2.2326 -6.0049 19 6 1.9013 2.9206 -6.9942 20 6 0.9556 3.3717 -7.8401 21 7 -0.2385 2.9697 -7.3803 22 6 -0.0683 2.2815 -6.2847 23 6 1.5363 0.0693 -4.8960 24 6 2.1371 -0.6142 -3.6656 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.6053 -1.7197 1.2953 29 1 3.1263 -0.7995 1.2057 30 1 2.9234 -1.8416 4.7319 31 1 1.6463 -1.7376 -1.2681 32 1 3.1294 -0.7541 -1.2305 33 1 1.5529 1.8423 -1.4409 34 1 3.0283 1.5310 -2.3864 35 1 1.6114 3.2212 -3.5085 36 1 0.2517 2.0724 -3.5348 37 1 2.9549 1.6927 -4.9035 38 1 2.9671 3.0731 -7.0793 39 1 1.1284 3.9550 -8.7325 40 1 -0.8535 1.8289 -5.6973 41 1 1.9528 -0.3762 -5.7995 42 1 0.4541 -0.0602 -4.8921 43 1 3.2207 -0.4969 -3.6779 44 1 1.8865 -1.6749 -3.6811 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000618887258.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:09 Heat of formation + Delta-G solvation = 49.963613 kcal Electronic energy + Delta-G solvation = -21669.217842 eV Core-core repulsion = 18621.891931 eV Total energy + Delta-G solvation = -3047.325911 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.25219 -39.26486 -36.09295 -33.96591 -32.22863 -31.14498 -30.61229 -29.39914 -26.93035 -26.03299 -24.02017 -23.45189 -22.44972 -21.61830 -21.09594 -19.67468 -18.78363 -17.72495 -16.48440 -15.59514 -15.36167 -15.05850 -14.80386 -14.64329 -14.41809 -14.05464 -13.86142 -13.59068 -13.52601 -13.22915 -12.71620 -12.31516 -12.23684 -11.82048 -11.53104 -11.46776 -11.33172 -11.03707 -10.92945 -10.86750 -10.78244 -10.33800 -10.26647 -10.09382 -9.75663 -9.57959 -9.21517 -8.99785 -8.65393 -8.37126 -8.18331 -6.02061 -4.03475 1.93188 2.58991 3.06110 3.29921 3.36560 3.39211 3.93087 4.21243 4.43125 4.44736 4.58704 4.61097 4.71825 4.92278 5.11652 5.18794 5.23796 5.33762 5.35612 5.39067 5.43641 5.53866 5.63715 5.67556 5.76830 5.80430 5.91656 5.99048 6.07158 6.18812 6.34514 6.44025 6.57471 6.60124 6.92384 7.03711 7.05068 7.12445 7.24613 7.29682 7.63437 7.78682 7.95666 7.97552 8.41035 9.02820 9.60288 11.09429 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.038629 B = 0.003090 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.662424 B = 9059.117178 C = 9375.165437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.087 4.087 3 H 0.057 0.943 4 C 0.028 3.972 5 C -0.513 4.513 6 H 0.056 0.944 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.061 3.939 14 N -0.535 5.535 15 C 0.052 3.948 16 C -0.122 4.122 17 C 0.133 3.867 18 N -0.450 5.450 19 C -0.060 4.060 20 C -0.035 4.035 21 N -0.500 5.500 22 C 0.187 3.813 23 C -0.122 4.122 24 C 0.058 3.942 25 H 0.041 0.959 26 H 0.041 0.959 27 H 0.054 0.946 28 H 0.017 0.983 29 H 0.012 0.988 30 H 0.260 0.740 31 H 0.073 0.927 32 H 0.029 0.971 33 H 0.098 0.902 34 H 0.033 0.967 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.095 0.905 38 H 0.170 0.830 39 H 0.166 0.834 40 H 0.201 0.799 41 H 0.071 0.929 42 H 0.081 0.919 43 H 0.033 0.967 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.005 5.200 -19.393 20.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.105 4.105 3 H 0.076 0.924 4 C -0.010 4.010 5 C -0.552 4.552 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.536 5.536 9 Si 0.717 3.283 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.066 4.066 14 N -0.260 5.260 15 C -0.076 4.076 16 C -0.161 4.161 17 C 0.030 3.970 18 N -0.132 5.132 19 C -0.193 4.193 20 C -0.183 4.183 21 N -0.218 5.218 22 C -0.096 4.096 23 C -0.160 4.160 24 C -0.071 4.071 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.073 0.927 28 H 0.035 0.965 29 H 0.030 0.970 30 H 0.069 0.931 31 H 0.091 0.909 32 H 0.047 0.953 33 H 0.116 0.884 34 H 0.051 0.949 35 H 0.091 0.909 36 H 0.099 0.901 37 H 0.114 0.886 38 H 0.187 0.813 39 H 0.184 0.816 40 H 0.218 0.782 41 H 0.090 0.910 42 H 0.100 0.900 43 H 0.051 0.949 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.107 5.150 -19.536 20.234 hybrid contribution 1.594 0.293 1.350 2.109 sum 0.487 5.443 -18.186 18.990 Atomic orbital electron populations 1.21596 0.95561 1.00816 1.00103 1.21333 0.96131 0.99027 0.94029 0.92436 1.19116 0.95894 0.95612 0.90370 1.21214 1.34662 1.08335 0.90969 0.92596 1.25018 0.95280 0.95096 0.99116 1.69961 1.39005 1.21236 1.23422 0.86636 0.78271 0.80411 0.82937 1.20677 1.21307 1.19915 1.22316 0.97216 0.98040 0.88980 1.62028 1.59692 1.01990 1.02253 1.22154 0.97884 0.88952 0.98655 1.21984 1.02386 0.99394 0.92298 1.21663 0.98145 0.92985 0.84197 1.45784 1.07808 1.39614 1.19990 1.22741 0.99601 1.04072 0.92903 1.22274 0.88323 1.05816 1.01877 1.70307 1.26916 1.14444 1.10180 1.24899 0.85168 1.02670 0.96840 1.21959 1.03103 0.92528 0.98411 1.22010 0.96551 0.99207 0.89353 0.94008 0.93955 0.92726 0.96512 0.96960 0.93061 0.90890 0.95289 0.88414 0.94865 0.90934 0.90056 0.88643 0.81264 0.81647 0.78204 0.91039 0.90038 0.94870 0.89974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.24 8.80 37.16 0.33 -1.91 16 2 C -0.09 -1.64 1.85 -90.62 -0.17 -1.81 16 3 H 0.06 1.10 6.06 -51.93 -0.31 0.78 16 4 C 0.03 0.68 4.45 -27.88 -0.12 0.55 16 5 C -0.51 -13.98 8.41 -34.44 -0.29 -14.27 16 6 H 0.06 1.48 7.05 -52.49 -0.37 1.11 16 7 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -26.52 13.29 55.43 0.74 -25.78 16 9 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 12 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 13 C 0.06 0.97 4.54 -3.82 -0.02 0.95 16 14 N -0.53 -6.79 4.09 -234.67 -0.96 -7.75 16 15 C 0.05 0.61 4.99 -3.84 -0.02 0.59 16 16 C -0.12 -1.18 5.46 -26.65 -0.15 -1.33 16 17 C 0.13 1.16 2.93 -67.80 -0.20 0.96 16 18 N -0.45 -4.38 2.62 -111.32 -0.29 -4.67 16 19 C -0.06 -0.56 11.55 -16.56 -0.19 -0.76 16 20 C -0.03 -0.38 11.87 -17.81 -0.21 -0.59 16 21 N -0.50 -6.44 11.25 -14.67 -0.17 -6.60 16 22 C 0.19 2.03 11.46 -90.39 -1.04 1.00 16 23 C -0.12 -1.06 5.45 -26.64 -0.15 -1.21 16 24 C 0.06 0.59 5.46 -3.83 -0.02 0.57 16 25 H 0.04 0.66 7.59 -51.93 -0.39 0.27 16 26 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.05 1.07 6.95 -51.93 -0.36 0.71 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 31 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.10 1.31 5.72 -51.93 -0.30 1.01 16 34 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.08 0.82 7.88 -51.93 -0.41 0.41 16 37 H 0.10 0.77 8.09 -51.93 -0.42 0.35 16 38 H 0.17 1.12 8.06 -52.49 -0.42 0.70 16 39 H 0.17 1.39 8.06 -52.49 -0.42 0.97 16 40 H 0.20 1.74 8.06 -52.49 -0.42 1.32 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.08 0.75 7.88 -51.94 -0.41 0.34 16 43 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 44 H 0.08 0.83 8.12 -51.93 -0.42 0.41 16 LS Contribution 345.88 15.07 5.21 5.21 Total: -1.00 -30.67 345.88 -10.43 -41.10 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -7.61 Total: -2.05 kcal Atomic # 6 Polarization: -13.43 SS G_CDS: -2.34 Total: -15.77 kcal Atomic # 7 Polarization: -44.13 SS G_CDS: -0.68 Total: -44.81 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.67 -10.43 -41.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618887258.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.067 kcal (2) G-P(sol) polarization free energy of solvation -30.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds