Wall clock time and date at job start Mon Mar 30 2020 02:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47378 * 2 1 4 4 C 1.53007 * 109.46714 * 119.99792 * 2 1 3 5 5 C 1.50702 * 109.47019 * 294.99717 * 4 2 1 6 6 H 1.07994 * 120.00076 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99711 * 180.02562 * 5 4 2 8 8 N 1.31514 * 120.00036 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99928 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47375 * 89.99258 * 9 7 5 11 11 H 1.48501 * 109.47311 * 209.99749 * 9 7 5 12 12 H 1.48502 * 109.47067 * 329.99620 * 9 7 5 13 13 C 1.52993 * 109.47130 * 239.99132 * 2 1 3 14 14 N 1.46908 * 109.46656 * 62.10088 * 13 2 1 15 15 C 1.46846 * 110.99995 * 52.06037 * 14 13 2 16 16 C 1.53035 * 109.51986 * 185.84140 * 15 14 13 17 17 C 1.53119 * 109.28104 * 300.81655 * 16 15 14 18 18 N 1.46500 * 109.52712 * 177.56040 * 17 16 15 19 19 C 1.36887 * 126.39579 * 120.32004 * 18 17 16 20 20 C 1.34667 * 106.81233 * 180.02562 * 19 18 17 21 21 N 1.34125 * 108.02278 * 359.97438 * 20 19 18 22 22 C 1.30492 * 109.25618 * 359.72376 * 21 20 19 23 23 C 1.53128 * 109.15716 * 57.65796 * 17 16 15 24 24 C 1.46844 * 110.99886 * 176.26935 * 14 13 2 25 25 H 1.08995 * 109.46589 * 59.99944 * 1 2 3 26 26 H 1.08990 * 109.47239 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46720 * 300.00507 * 1 2 3 28 28 H 1.08993 * 109.47131 * 54.99721 * 4 2 1 29 29 H 1.09001 * 109.46845 * 174.99801 * 4 2 1 30 30 H 0.97000 * 119.99970 * 180.02562 * 8 7 5 31 31 H 1.08993 * 109.47921 * 302.10385 * 13 2 1 32 32 H 1.09001 * 109.47095 * 182.09577 * 13 2 1 33 33 H 1.08996 * 109.46456 * 305.85436 * 15 14 13 34 34 H 1.09001 * 109.46388 * 65.82790 * 15 14 13 35 35 H 1.08999 * 109.50508 * 180.88343 * 16 15 14 36 36 H 1.08998 * 109.54270 * 60.77711 * 16 15 14 37 37 H 1.09000 * 109.52482 * 297.75987 * 17 16 15 38 38 H 1.08001 * 126.59122 * 359.96569 * 19 18 17 39 39 H 1.08001 * 125.98514 * 179.97438 * 20 19 18 40 40 H 1.08002 * 125.64721 * 180.29224 * 22 21 20 41 41 H 1.09007 * 109.50299 * 182.40878 * 23 17 16 42 42 H 1.08989 * 109.53744 * 62.30642 * 23 17 16 43 43 H 1.08998 * 109.46889 * 294.17751 * 24 14 13 44 44 H 1.09004 * 109.46624 * 54.15643 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2494 5 6 1.6413 0.0572 2.4766 6 1 1.0800 0.9743 2.3757 7 6 1.9931 -0.4016 3.7284 8 7 2.6762 -1.5187 3.8513 9 14 1.4984 0.5629 5.2497 10 1 0.1714 0.0939 5.7233 11 1 2.5078 0.3535 6.3185 12 1 1.4226 2.0081 4.9166 13 6 2.0400 -0.7214 -1.2491 14 7 1.5922 -0.0003 -2.4481 15 6 1.9438 1.4232 -2.3681 16 6 1.3372 2.1675 -3.5597 17 6 1.8736 1.5625 -4.8600 18 7 1.2519 2.2326 -6.0049 19 6 1.9013 2.9206 -6.9942 20 6 0.9556 3.3717 -7.8401 21 7 -0.2385 2.9697 -7.3803 22 6 -0.0683 2.2815 -6.2847 23 6 1.5363 0.0693 -4.8960 24 6 2.1371 -0.6142 -3.6656 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.6053 -1.7197 1.2953 29 1 3.1263 -0.7995 1.2057 30 1 2.9234 -1.8416 4.7319 31 1 1.6463 -1.7376 -1.2681 32 1 3.1294 -0.7541 -1.2305 33 1 1.5529 1.8423 -1.4409 34 1 3.0283 1.5310 -2.3864 35 1 1.6114 3.2212 -3.5085 36 1 0.2517 2.0724 -3.5348 37 1 2.9549 1.6927 -4.9035 38 1 2.9671 3.0731 -7.0793 39 1 1.1284 3.9550 -8.7325 40 1 -0.8535 1.8289 -5.6973 41 1 1.9528 -0.3762 -5.7995 42 1 0.4541 -0.0602 -4.8921 43 1 3.2207 -0.4969 -3.6779 44 1 1.8865 -1.6749 -3.6811 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000618887258.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:09 Heat of formation + Delta-G solvation = 33.778889 kcal Electronic energy + Delta-G solvation = -21669.919665 eV Core-core repulsion = 18621.891931 eV Total energy + Delta-G solvation = -3048.027733 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.00639 -40.24848 -37.38538 -35.35140 -33.96658 -31.98519 -31.65149 -30.17964 -28.80262 -27.26282 -25.42353 -24.32574 -23.85182 -22.47260 -21.91136 -20.60503 -20.16976 -18.60325 -18.38517 -16.82946 -16.34018 -16.18495 -16.02637 -15.86569 -15.44650 -15.08702 -14.75617 -14.58631 -14.40840 -14.32481 -14.06695 -13.89798 -13.38531 -13.15597 -13.06992 -12.74238 -12.63366 -12.38185 -12.27793 -12.19848 -12.03899 -11.84504 -11.69970 -11.32605 -11.04170 -10.90243 -10.84730 -10.53069 -10.43813 -9.39788 -9.23075 -8.17446 -6.26089 1.19483 1.40506 1.40900 1.51570 1.86204 2.26903 2.41791 2.92775 3.16460 3.49108 3.67538 3.85671 3.90618 4.03010 4.04684 4.19508 4.28686 4.36156 4.38102 4.50601 4.54743 4.63254 4.66568 4.77070 4.78815 4.87571 4.90797 4.93853 4.99313 5.05029 5.07251 5.18983 5.31011 5.44727 5.48970 5.52907 5.56337 5.82310 5.88302 5.89913 6.08204 6.21594 6.31260 6.32481 6.90437 7.19324 7.42318 8.94545 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.038629 B = 0.003090 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.662424 B = 9059.117178 C = 9375.165437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.077 4.077 3 H 0.059 0.941 4 C 0.032 3.968 5 C -0.527 4.527 6 H 0.061 0.939 7 C -0.002 4.002 8 N -0.935 5.935 9 Si 0.958 3.042 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.263 1.263 13 C 0.073 3.927 14 N -0.536 5.536 15 C 0.052 3.948 16 C -0.112 4.112 17 C 0.139 3.861 18 N -0.448 5.448 19 C -0.053 4.053 20 C -0.059 4.059 21 N -0.538 5.538 22 C 0.177 3.823 23 C -0.112 4.112 24 C 0.058 3.942 25 H 0.067 0.933 26 H 0.035 0.965 27 H 0.035 0.965 28 H -0.010 1.010 29 H -0.014 1.014 30 H 0.261 0.739 31 H 0.069 0.931 32 H 0.022 0.978 33 H 0.080 0.920 34 H 0.035 0.965 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.110 0.890 38 H 0.199 0.801 39 H 0.180 0.820 40 H 0.215 0.785 41 H 0.083 0.917 42 H 0.078 0.922 43 H 0.039 0.961 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.011 6.302 -20.407 21.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.095 4.095 3 H 0.077 0.923 4 C -0.005 4.005 5 C -0.565 4.565 6 H 0.079 0.921 7 C -0.199 4.199 8 N -0.576 5.576 9 Si 0.783 3.217 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.187 1.187 13 C -0.054 4.054 14 N -0.260 5.260 15 C -0.076 4.076 16 C -0.151 4.151 17 C 0.036 3.964 18 N -0.130 5.130 19 C -0.186 4.186 20 C -0.206 4.206 21 N -0.257 5.257 22 C -0.105 4.105 23 C -0.150 4.150 24 C -0.071 4.071 25 H 0.086 0.914 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.008 0.992 29 H 0.004 0.996 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.041 0.959 33 H 0.098 0.902 34 H 0.054 0.946 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.128 0.872 38 H 0.216 0.784 39 H 0.197 0.803 40 H 0.231 0.769 41 H 0.102 0.898 42 H 0.097 0.903 43 H 0.057 0.943 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.106 6.265 -20.571 21.533 hybrid contribution 1.615 -0.059 1.625 2.292 sum 0.509 6.206 -18.946 19.943 Atomic orbital electron populations 1.21482 0.94641 1.00491 1.00398 1.21128 0.96720 0.98610 0.93079 0.92274 1.19012 0.94072 0.94700 0.92741 1.21639 1.34211 1.08570 0.92074 0.92112 1.25922 0.95313 0.96087 1.02585 1.70094 1.40363 1.22962 1.24221 0.85553 0.77959 0.79375 0.78825 1.20009 1.21048 1.18717 1.22008 0.96604 0.97708 0.89098 1.61984 1.59878 1.02343 1.01840 1.22127 0.98130 0.88389 0.98944 1.21863 1.02034 0.99360 0.91834 1.21641 0.98731 0.92675 0.83327 1.45821 1.07519 1.39504 1.20141 1.23205 1.00740 1.02705 0.91970 1.22666 0.88205 1.06694 1.03018 1.70271 1.28350 1.15688 1.11402 1.25187 0.86043 1.02601 0.96699 1.21864 1.02877 0.92384 0.97892 1.22069 0.96960 0.99436 0.88609 0.91406 0.94553 0.94571 0.99193 0.99606 0.92990 0.91299 0.95943 0.90154 0.94629 0.90415 0.90347 0.87246 0.78399 0.80250 0.76871 0.89819 0.90302 0.94269 0.89715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.04 8.80 71.98 0.63 -3.40 16 2 C -0.08 -2.92 1.85 -10.79 -0.02 -2.94 16 3 H 0.06 2.24 6.06 -2.39 -0.01 2.23 16 4 C 0.03 1.64 4.45 29.85 0.13 1.77 16 5 C -0.53 -29.08 8.41 25.60 0.22 -28.86 16 6 H 0.06 3.22 7.05 -2.91 -0.02 3.20 16 7 C 0.00 -0.11 5.46 84.66 0.46 0.36 16 8 N -0.94 -56.49 13.29 21.45 0.28 -56.20 16 9 Si 0.96 43.86 29.54 68.60 2.03 45.88 16 10 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 11 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 12 H -0.26 -11.46 7.11 99.48 0.71 -10.76 16 13 C 0.07 2.28 4.54 86.30 0.39 2.67 16 14 N -0.54 -12.69 4.09 -896.37 -3.66 -16.36 16 15 C 0.05 1.14 4.99 86.33 0.43 1.57 16 16 C -0.11 -1.90 5.46 30.65 0.17 -1.73 16 17 C 0.14 2.01 2.93 45.07 0.13 2.14 16 18 N -0.45 -7.55 2.62 -506.12 -1.33 -8.88 16 19 C -0.05 -0.85 11.55 83.08 0.96 0.11 16 20 C -0.06 -1.17 11.87 83.52 0.99 -0.18 16 21 N -0.54 -13.25 11.25 -200.32 -2.25 -15.51 16 22 C 0.18 3.55 11.46 180.27 2.07 5.62 16 23 C -0.11 -1.63 5.45 30.65 0.17 -1.46 16 24 C 0.06 1.05 5.46 86.33 0.47 1.52 16 25 H 0.07 2.06 7.59 -2.39 -0.02 2.04 16 26 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.04 1.40 6.95 -2.39 -0.02 1.38 16 28 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 29 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 30 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 31 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.08 2.05 5.72 -2.39 -0.01 2.03 16 34 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.08 1.40 7.88 -2.39 -0.02 1.38 16 37 H 0.11 1.35 8.09 -2.39 -0.02 1.33 16 38 H 0.20 1.88 8.06 -2.91 -0.02 1.86 16 39 H 0.18 2.77 8.06 -2.91 -0.02 2.75 16 40 H 0.21 3.38 8.06 -2.91 -0.02 3.35 16 41 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 42 H 0.08 1.24 7.88 -2.39 -0.02 1.22 16 43 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.08 1.53 8.12 -2.38 -0.02 1.51 16 Total: -1.00 -66.60 345.88 3.21 -63.39 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: 0.95 Total: 10.49 kcal Atomic # 6 Polarization: -30.02 SS G_CDS: 7.20 Total: -22.82 kcal Atomic # 7 Polarization: -89.98 SS G_CDS: -6.96 Total: -96.94 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.88 kcal Total: -66.60 3.21 -63.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618887258.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.172 kcal (2) G-P(sol) polarization free energy of solvation -66.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds