Wall clock time and date at job start Mon Mar 30 2020 02:33:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 119.99751 * 2 1 4 4 H 1.48504 * 109.46897 * 243.50485 * 3 2 1 5 5 H 1.48497 * 109.47289 * 3.50677 * 3 2 1 6 6 H 1.48500 * 109.46856 * 123.50814 * 3 2 1 7 7 C 1.37875 * 119.99958 * 179.72613 * 2 1 3 8 8 H 1.08000 * 120.00145 * 324.75655 * 7 2 1 9 9 C 1.50705 * 119.99947 * 144.76282 * 7 2 1 10 10 C 1.52997 * 115.54974 * 186.09410 * 9 7 2 11 11 N 1.46900 * 109.47119 * 325.58008 * 10 9 7 12 12 C 1.48553 * 111.00441 * 285.41957 * 11 10 9 13 13 C 1.54378 * 104.59952 * 200.95738 * 12 11 10 14 14 C 1.54266 * 105.05757 * 23.85380 * 13 12 11 15 15 C 1.48565 * 111.00201 * 169.99609 * 11 10 9 16 16 H 1.08999 * 110.40537 * 40.14834 * 15 11 10 17 17 C 1.52995 * 110.41368 * 277.82513 * 15 11 10 18 18 C 1.52999 * 109.46866 * 300.79722 * 17 15 11 19 19 C 1.53011 * 109.47101 * 180.02562 * 18 17 15 20 20 C 1.52999 * 109.46644 * 59.99817 * 19 18 17 21 21 C 1.52999 * 109.47521 * 299.99926 * 20 19 18 22 22 C 1.52995 * 109.46866 * 60.00577 * 21 20 19 23 23 C 1.53002 * 117.49915 * 40.42561 * 9 7 2 24 24 C 1.52996 * 117.49761 * 331.76211 * 9 7 2 25 25 H 0.96996 * 119.99913 * 185.03914 * 1 2 3 26 26 H 1.08998 * 109.47257 * 85.58129 * 10 9 7 27 27 H 1.09002 * 109.47051 * 205.58421 * 10 9 7 28 28 H 1.09003 * 110.41072 * 319.73920 * 12 11 10 29 29 H 1.09006 * 110.41014 * 82.17894 * 12 11 10 30 30 H 1.09001 * 110.32689 * 264.96069 * 13 12 11 31 31 H 1.08999 * 110.32574 * 142.74583 * 13 12 11 32 32 H 1.09004 * 110.32228 * 241.10309 * 14 13 12 33 33 H 1.09000 * 110.32387 * 118.89659 * 14 13 12 34 34 H 1.08996 * 109.47668 * 60.79849 * 17 15 11 35 35 H 1.09005 * 109.47390 * 300.00016 * 18 17 15 36 36 H 1.09003 * 109.46980 * 60.00499 * 18 17 15 37 37 H 1.08998 * 109.46479 * 300.00234 * 19 18 17 38 38 H 1.08992 * 109.47012 * 179.97438 * 19 18 17 39 39 H 1.09001 * 109.46616 * 180.02562 * 20 19 18 40 40 H 1.09005 * 109.47246 * 60.00574 * 20 19 18 41 41 H 1.08996 * 109.47081 * 300.00090 * 21 20 19 42 42 H 1.09003 * 109.46980 * 180.02562 * 21 20 19 43 43 H 1.09004 * 109.47148 * 179.97438 * 22 21 20 44 44 H 1.09001 * 109.47460 * 59.99461 * 22 21 20 45 45 H 1.09001 * 117.49583 * 359.97438 * 23 9 7 46 46 H 1.08992 * 117.49881 * 145.02100 * 23 9 7 47 47 H 1.08995 * 117.50116 * 214.97867 * 24 9 7 48 48 H 1.08999 * 117.50405 * 359.97438 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.0375 1.7342 -1.2531 5 1 1.2864 2.7452 0.0856 6 1 3.1660 1.6600 1.1674 7 6 2.0046 -1.1940 0.0057 8 1 1.6130 -2.0410 0.5495 9 6 3.3045 -1.3172 -0.7467 10 6 3.9094 -2.7217 -0.7935 11 7 3.6221 -3.4208 0.4662 12 6 4.4748 -2.9049 1.5679 13 6 4.4709 -4.0316 2.6232 14 6 4.1456 -5.3174 1.8355 15 6 3.9803 -4.8594 0.3705 16 1 4.9153 -4.9827 -0.1760 17 6 2.8577 -5.6446 -0.3107 18 6 1.5656 -5.4887 0.4936 19 6 0.4430 -6.2745 -0.1872 20 6 0.8256 -7.7543 -0.2560 21 6 2.1178 -7.9102 -1.0604 22 6 3.2402 -7.1245 -0.3795 23 6 4.2716 -0.1332 -0.6846 24 6 3.4981 -0.4235 -1.9733 25 1 -0.4850 -0.8368 0.0738 26 1 3.4746 -3.2771 -1.6245 27 1 4.9883 -2.6483 -0.9304 28 1 5.4882 -2.7222 1.2105 29 1 4.0473 -1.9926 1.9842 30 1 3.7040 -3.8438 3.3747 31 1 5.4509 -4.1134 3.0934 32 1 3.2191 -5.7608 2.2004 33 1 4.9659 -6.0303 1.9190 34 1 2.7062 -5.2609 -1.3196 35 1 1.7170 -5.8725 1.5026 36 1 1.2933 -4.4344 0.5430 37 1 0.2915 -5.8911 -1.1962 38 1 -0.4773 -6.1638 0.3860 39 1 0.0261 -8.3140 -0.7415 40 1 0.9772 -8.1377 0.7530 41 1 1.9661 -7.5269 -2.0693 42 1 2.3900 -8.9645 -1.1097 43 1 4.1609 -7.2359 -0.9522 44 1 3.3917 -7.5078 0.6296 45 1 3.9675 0.7349 -0.0999 46 1 5.3387 -0.3550 -0.6775 47 1 4.0568 -0.8359 -2.8134 48 1 2.6852 0.2533 -2.2364 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688809013.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:12 Heat of formation + Delta-G solvation = 27.789735 kcal Electronic energy + Delta-G solvation = -23516.806688 eV Core-core repulsion = 20572.059589 eV Total energy + Delta-G solvation = -2944.747099 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.63841 -37.55264 -36.35062 -32.06341 -31.57020 -31.27021 -30.47551 -26.85633 -25.65761 -24.50854 -22.65607 -22.27422 -21.40267 -20.77281 -20.06999 -18.96054 -18.46956 -16.70754 -15.65754 -15.48449 -15.07094 -14.62416 -14.16882 -13.98122 -13.93341 -13.55535 -13.40820 -12.73864 -12.48431 -12.13209 -11.90953 -11.72239 -11.65187 -11.59937 -11.33149 -11.25444 -11.05206 -10.85055 -10.76587 -10.59564 -10.44470 -10.31739 -9.91678 -9.89637 -9.78684 -9.70870 -9.62577 -9.11642 -8.70411 -8.49454 -7.90600 -7.56051 -6.48388 -3.82086 3.46603 3.51625 3.72876 4.45840 4.55237 4.80967 4.89069 4.93991 5.02433 5.06340 5.19187 5.30604 5.46639 5.51737 5.57579 5.64340 5.69524 5.73355 5.76264 5.81622 5.84792 5.87104 5.91778 6.02747 6.07771 6.11255 6.14339 6.17016 6.24344 6.29538 6.36622 6.40859 6.43043 6.47216 6.52537 6.57191 6.59727 6.65234 6.77270 6.84473 6.86578 7.00491 7.07081 7.25933 7.59786 7.81798 8.45961 8.52530 9.22216 9.69168 10.91227 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.019758 B = 0.005913 C = 0.005316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.806757 B = 4734.204961 C = 5266.082140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.039 3.961 3 Si 1.045 2.955 4 H -0.270 1.270 5 H -0.307 1.307 6 H -0.295 1.295 7 C -0.559 4.559 8 H 0.083 0.917 9 C 0.049 3.951 10 C 0.096 3.904 11 N -0.471 5.471 12 C 0.042 3.958 13 C -0.124 4.124 14 C -0.121 4.121 15 C 0.061 3.939 16 H 0.038 0.962 17 C -0.066 4.066 18 C -0.107 4.107 19 C -0.121 4.121 20 C -0.118 4.118 21 C -0.117 4.117 22 C -0.113 4.113 23 C -0.249 4.249 24 C -0.216 4.216 25 H 0.272 0.728 26 H 0.063 0.937 27 H 0.013 0.987 28 H 0.029 0.971 29 H 0.089 0.911 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.076 0.924 33 H 0.056 0.944 34 H 0.067 0.933 35 H 0.055 0.945 36 H 0.087 0.913 37 H 0.059 0.941 38 H 0.057 0.943 39 H 0.054 0.946 40 H 0.057 0.943 41 H 0.059 0.941 42 H 0.054 0.946 43 H 0.054 0.946 44 H 0.060 0.940 45 H 0.075 0.925 46 H 0.066 0.934 47 H 0.065 0.935 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.016 -13.839 1.053 15.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.170 4.170 3 Si 0.879 3.121 4 H -0.197 1.197 5 H -0.236 1.236 6 H -0.224 1.224 7 C -0.595 4.595 8 H 0.101 0.899 9 C 0.047 3.953 10 C -0.032 4.032 11 N -0.194 5.194 12 C -0.086 4.086 13 C -0.163 4.163 14 C -0.159 4.159 15 C -0.047 4.047 16 H 0.056 0.944 17 C -0.085 4.085 18 C -0.144 4.144 19 C -0.158 4.158 20 C -0.155 4.155 21 C -0.154 4.154 22 C -0.151 4.151 23 C -0.286 4.286 24 C -0.254 4.254 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.031 0.969 28 H 0.047 0.953 29 H 0.108 0.892 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.095 0.905 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.074 0.926 36 H 0.106 0.894 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.073 0.927 43 H 0.072 0.928 44 H 0.079 0.921 45 H 0.093 0.907 46 H 0.085 0.915 47 H 0.083 0.917 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 6.207 -12.135 1.079 13.673 hybrid contribution 1.412 -1.456 -0.244 2.043 sum 7.619 -13.591 0.835 15.603 Atomic orbital electron populations 1.70895 1.07534 1.31564 1.41128 1.25711 0.95658 1.02386 0.93239 0.84322 0.74043 0.76256 0.77448 1.19703 1.23557 1.22444 1.21278 1.03903 0.99699 1.34598 0.89895 1.19225 0.94742 0.85802 0.95510 1.21657 0.95188 0.95179 0.91139 1.65245 1.49880 0.99604 1.04640 1.23016 0.94683 0.98615 0.92298 1.22298 1.00713 0.95000 0.98255 1.22418 1.01412 0.97171 0.94873 1.22668 0.95788 0.90840 0.95440 0.94411 1.20955 0.94949 0.93108 0.99508 1.21537 0.93148 1.02076 0.97634 1.21561 0.98605 0.94512 1.01150 1.21537 0.96910 0.97182 0.99889 1.21501 0.95390 0.99187 0.99359 1.21585 0.97525 0.95512 1.00484 1.23600 0.96775 1.05283 1.02923 1.23348 1.03142 1.07571 0.91383 0.91758 0.91847 0.96877 0.95263 0.89232 0.91336 0.92400 0.90522 0.92506 0.91471 0.92611 0.89406 0.92219 0.92464 0.92771 0.92436 0.92222 0.92696 0.92758 0.92109 0.90706 0.91515 0.91695 0.89380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.49 13.70 55.43 0.76 -25.73 16 2 C 0.04 1.10 5.04 -17.82 -0.09 1.01 16 3 Si 1.04 26.24 23.54 -169.99 -4.00 22.23 16 4 H -0.27 -6.41 4.99 56.52 0.28 -6.13 16 5 H -0.31 -7.88 7.11 56.52 0.40 -7.48 16 6 H -0.30 -7.21 6.87 56.52 0.39 -6.82 16 7 C -0.56 -15.23 9.00 -34.44 -0.31 -15.54 16 8 H 0.08 2.40 7.37 -52.49 -0.39 2.02 16 9 C 0.05 1.16 2.12 -155.66 -0.33 0.82 16 10 C 0.10 1.94 4.91 -3.83 -0.02 1.93 16 11 N -0.47 -8.75 3.07 -222.14 -0.68 -9.43 16 12 C 0.04 0.74 6.12 -2.19 -0.01 0.72 16 13 C -0.12 -1.79 7.00 -25.35 -0.18 -1.96 16 14 C -0.12 -1.63 5.38 -25.35 -0.14 -1.76 16 15 C 0.06 0.93 2.06 -66.07 -0.14 0.80 16 16 H 0.04 0.58 7.99 -51.93 -0.42 0.16 16 17 C -0.07 -0.95 2.11 -90.62 -0.19 -1.14 16 18 C -0.11 -1.62 4.75 -26.73 -0.13 -1.75 16 19 C -0.12 -1.64 5.92 -26.73 -0.16 -1.80 16 20 C -0.12 -1.34 5.92 -26.73 -0.16 -1.49 16 21 C -0.12 -1.28 5.92 -26.73 -0.16 -1.44 16 22 C -0.11 -1.33 5.02 -26.73 -0.13 -1.46 16 23 C -0.25 -5.67 8.69 -26.69 -0.23 -5.90 16 24 C -0.22 -4.98 8.84 -26.69 -0.24 -5.22 16 25 H 0.27 8.11 8.73 -40.82 -0.36 7.75 16 26 H 0.06 1.27 7.17 -51.93 -0.37 0.90 16 27 H 0.01 0.25 7.52 -51.93 -0.39 -0.14 16 28 H 0.03 0.50 7.75 -51.93 -0.40 0.10 16 29 H 0.09 1.80 8.14 -51.93 -0.42 1.38 16 30 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.08 1.03 5.50 -51.93 -0.29 0.74 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.07 1.08 7.29 -51.93 -0.38 0.70 16 35 H 0.06 0.81 5.93 -51.93 -0.31 0.50 16 36 H 0.09 1.68 7.63 -51.93 -0.40 1.29 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.06 0.69 7.36 -51.93 -0.38 0.30 16 45 H 0.08 1.79 2.63 -51.93 -0.14 1.66 16 46 H 0.07 1.37 8.05 -51.93 -0.42 0.95 16 47 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 48 H 0.09 2.18 5.68 -51.93 -0.29 1.88 16 LS Contribution 342.41 15.07 5.16 5.16 Total: -1.00 -28.22 342.41 -10.30 -38.52 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -8.92 Total: 3.46 kcal Atomic # 6 Polarization: -31.60 SS G_CDS: -2.61 Total: -34.20 kcal Atomic # 7 Polarization: -35.24 SS G_CDS: 0.08 Total: -35.17 kcal Atomic # 14 Polarization: 26.24 SS G_CDS: -4.00 Total: 22.23 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -28.22 -10.30 -38.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688809013.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.307 kcal (2) G-P(sol) polarization free energy of solvation -28.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds