Wall clock time and date at job start Mon Mar 30 2020 02:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86802 * 119.99807 * 2 1 4 4 H 1.48505 * 109.46813 * 89.99824 * 3 2 1 5 5 H 1.48500 * 109.47211 * 330.00388 * 3 2 1 6 6 H 1.48497 * 109.46812 * 209.99889 * 3 2 1 7 7 C 1.37877 * 120.00059 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99791 * 185.62454 * 7 2 1 9 9 C 1.50696 * 119.99963 * 5.62293 * 7 2 1 10 10 C 1.53006 * 115.55211 * 274.83263 * 9 7 2 11 11 N 1.46900 * 109.46830 * 305.17802 * 10 9 7 12 12 C 1.47839 * 111.00095 * 294.26043 * 11 10 9 13 13 C 1.54907 * 104.79814 * 213.63676 * 12 11 10 14 14 C 1.55139 * 101.64963 * 37.07176 * 13 12 11 15 15 H 1.09003 * 110.70240 * 82.73269 * 14 13 12 16 16 C 1.52999 * 110.70450 * 205.96394 * 14 13 12 17 17 C 1.53010 * 109.47063 * 293.59984 * 16 14 13 18 18 C 1.52999 * 109.47063 * 180.02562 * 17 16 14 19 19 C 1.52993 * 109.47378 * 60.00055 * 18 17 16 20 20 C 1.53002 * 109.47153 * 300.00165 * 19 18 17 21 21 C 1.52993 * 109.47378 * 173.60039 * 16 14 13 22 22 C 1.47445 * 110.99688 * 173.42047 * 11 10 9 23 23 C 1.53003 * 117.50125 * 129.16395 * 9 7 2 24 24 C 1.52998 * 117.50170 * 60.50085 * 9 7 2 25 25 H 0.96998 * 120.00061 * 175.10491 * 1 2 3 26 26 H 1.09001 * 109.46938 * 65.17384 * 10 9 7 27 27 H 1.08995 * 109.47108 * 185.17870 * 10 9 7 28 28 H 1.08998 * 110.37774 * 332.46783 * 12 11 10 29 29 H 1.09009 * 110.37081 * 94.81067 * 12 11 10 30 30 H 1.08997 * 110.99117 * 278.97747 * 13 12 11 31 31 H 1.09000 * 110.98948 * 155.16150 * 13 12 11 32 32 H 1.09002 * 109.47163 * 53.59824 * 16 14 13 33 33 H 1.08994 * 109.46720 * 300.00044 * 17 16 14 34 34 H 1.09001 * 109.46641 * 60.00136 * 17 16 14 35 35 H 1.09002 * 109.47163 * 299.99840 * 18 17 16 36 36 H 1.09004 * 109.47110 * 180.02562 * 18 17 16 37 37 H 1.09000 * 109.47537 * 180.02562 * 19 18 17 38 38 H 1.09002 * 109.47149 * 59.99777 * 19 18 17 39 39 H 1.09002 * 109.46776 * 299.99840 * 20 19 18 40 40 H 1.08999 * 109.47281 * 179.97438 * 20 19 18 41 41 H 1.08996 * 109.47384 * 300.00390 * 21 16 14 42 42 H 1.09002 * 109.47149 * 59.99777 * 21 16 14 43 43 H 1.09001 * 109.88389 * 242.66243 * 22 11 10 44 44 H 1.08992 * 109.88934 * 3.68687 * 22 11 10 45 45 H 1.08996 * 117.49562 * 359.97438 * 23 9 7 46 46 H 1.08997 * 117.50013 * 145.02040 * 23 9 7 47 47 H 1.09001 * 117.50118 * 214.98045 * 24 9 7 48 48 H 1.09007 * 117.49581 * 0.02562 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 1.4465 2.6527 -0.7000 6 1 3.5467 1.4402 -0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0806 -1.1963 0.0911 9 6 1.2566 -2.4959 -0.1290 10 6 0.7118 -3.0758 1.1779 11 7 1.8071 -3.2119 2.1473 12 6 2.7939 -4.2153 1.6943 13 6 3.3112 -4.8772 2.9958 14 6 2.0216 -4.9251 3.8568 15 1 1.4171 -5.7943 3.5973 16 6 2.3663 -4.9296 5.3474 17 6 3.0838 -6.2340 5.7010 18 6 3.4280 -6.2387 7.1918 19 6 2.1418 -6.1256 8.0126 20 6 1.4242 -4.8214 7.6590 21 6 1.0804 -4.8162 6.1686 22 6 1.2956 -3.6199 3.4686 23 6 1.7356 -3.4838 -1.1946 24 6 0.4288 -2.7129 -1.3973 25 1 -0.4850 -0.8370 -0.0717 26 1 -0.0499 -2.4087 1.5817 27 1 0.2727 -4.0547 0.9859 28 1 2.3148 -4.9573 1.0556 29 1 3.6131 -3.7293 1.1642 30 1 4.0749 -4.2610 3.4703 31 1 3.6877 -5.8812 2.8002 32 1 3.0169 -4.0845 5.5725 33 1 2.4333 -7.0790 5.4760 34 1 4.0000 -6.3147 5.1160 35 1 4.0784 -5.3936 7.4173 36 1 3.9396 -7.1677 7.4436 37 1 2.3870 -6.1286 9.0746 38 1 1.4914 -6.9708 7.7871 39 1 2.0746 -3.9762 7.8844 40 1 0.5076 -4.7410 8.2434 41 1 0.5692 -3.8871 5.9168 42 1 0.4298 -5.6613 5.9436 43 1 1.5085 -2.8443 4.2043 44 1 0.2209 -3.7929 3.4129 45 1 2.5916 -3.1919 -1.8030 46 1 1.6623 -4.5468 -0.9647 47 1 -0.5037 -3.2691 -1.3007 48 1 0.4256 -1.9141 -2.1390 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708832908.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:21 Heat of formation + Delta-G solvation = -7.495909 kcal Electronic energy + Delta-G solvation = -22665.793537 eV Core-core repulsion = 19719.516337 eV Total energy + Delta-G solvation = -2946.277200 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.60998 -37.89487 -36.19594 -32.53912 -31.67161 -30.96047 -29.71900 -27.63906 -25.34733 -24.45727 -22.69709 -22.44381 -21.20886 -20.36380 -19.91878 -19.68932 -19.16594 -16.54826 -15.89745 -15.24446 -14.59968 -14.25291 -14.20560 -13.92287 -13.81568 -13.63065 -13.35138 -12.89807 -12.70897 -12.52520 -12.26711 -12.07758 -11.97819 -11.58593 -11.24295 -11.22013 -11.07146 -10.92440 -10.70323 -10.65703 -10.58685 -10.51303 -10.36492 -10.27261 -10.02407 -9.90695 -9.88105 -9.35370 -8.38059 -8.29593 -8.16165 -7.38227 -6.17069 -3.85778 3.52809 3.55993 3.71196 4.54439 4.57460 4.60045 4.65561 4.71417 4.94527 5.01503 5.11654 5.22377 5.28829 5.39150 5.41206 5.44626 5.51462 5.55009 5.56841 5.61479 5.76634 5.79559 5.90225 5.93378 5.93922 6.04395 6.05599 6.08777 6.10351 6.14977 6.19968 6.24780 6.32053 6.36554 6.38524 6.42816 6.48518 6.58928 6.61962 6.66956 6.78131 6.93822 7.31625 7.38835 7.81240 7.99502 8.47035 8.61829 9.06558 9.85203 11.23092 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.022995 B = 0.004202 C = 0.003924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.376145 B = 6661.522874 C = 7133.071776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.024 3.976 3 Si 1.068 2.932 4 H -0.289 1.289 5 H -0.288 1.288 6 H -0.291 1.291 7 C -0.539 4.539 8 H 0.050 0.950 9 C 0.034 3.966 10 C 0.096 3.904 11 N -0.499 5.499 12 C 0.054 3.946 13 C -0.124 4.124 14 C -0.103 4.103 15 H 0.067 0.933 16 C -0.073 4.073 17 C -0.113 4.113 18 C -0.119 4.119 19 C -0.119 4.119 20 C -0.119 4.119 21 C -0.116 4.116 22 C 0.048 3.952 23 C -0.200 4.200 24 C -0.184 4.184 25 H 0.272 0.728 26 H 0.067 0.933 27 H -0.001 1.001 28 H 0.035 0.965 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.059 0.941 39 H 0.061 0.939 40 H 0.058 0.942 41 H 0.066 0.934 42 H 0.058 0.942 43 H 0.071 0.929 44 H 0.043 0.957 45 H 0.078 0.922 46 H 0.061 0.939 47 H 0.062 0.938 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.159 -12.841 12.615 18.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.180 4.180 3 Si 0.898 3.102 4 H -0.216 1.216 5 H -0.214 1.214 6 H -0.217 1.217 7 C -0.578 4.578 8 H 0.069 0.931 9 C 0.034 3.966 10 C -0.032 4.032 11 N -0.222 5.222 12 C -0.073 4.073 13 C -0.162 4.162 14 C -0.123 4.123 15 H 0.086 0.914 16 C -0.091 4.091 17 C -0.150 4.150 18 C -0.157 4.157 19 C -0.156 4.156 20 C -0.157 4.157 21 C -0.154 4.154 22 C -0.080 4.080 23 C -0.237 4.237 24 C -0.222 4.222 25 H 0.083 0.917 26 H 0.085 0.915 27 H 0.017 0.983 28 H 0.053 0.947 29 H 0.096 0.904 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.085 0.915 42 H 0.077 0.923 43 H 0.089 0.911 44 H 0.061 0.939 45 H 0.096 0.904 46 H 0.080 0.920 47 H 0.081 0.919 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.185 -10.682 12.707 17.120 hybrid contribution -0.342 -2.545 -0.226 2.578 sum 3.843 -13.227 12.481 18.588 Atomic orbital electron populations 1.70700 1.06775 1.31258 1.46558 1.25645 0.96568 1.02001 0.93804 0.83560 0.74621 0.75438 0.76611 1.21631 1.21393 1.21717 1.21085 0.93769 0.89222 1.53675 0.93129 1.19090 0.97413 0.95175 0.84957 1.21907 0.91826 0.95667 0.93782 1.63392 1.13848 1.43970 1.01037 1.22934 0.96338 0.92662 0.95402 1.22791 0.97138 0.99973 0.96307 1.22433 0.97031 0.98342 0.94465 0.91437 1.21123 0.96613 0.97914 0.93498 1.21582 1.00269 0.97623 0.95574 1.21533 0.97311 1.01430 0.95414 1.21532 0.96977 0.98009 0.99114 1.21526 1.00034 0.97680 0.96458 1.21604 0.97376 1.02072 0.94319 1.22887 0.97143 0.94943 0.92999 1.22915 0.97961 0.95297 1.07519 1.22779 0.92694 1.02314 1.04429 0.91704 0.91490 0.98273 0.94719 0.90427 0.90926 0.91830 0.90900 0.92359 0.91927 0.92056 0.92420 0.92463 0.92270 0.92009 0.92307 0.91549 0.92342 0.91069 0.93873 0.90363 0.92037 0.91929 0.89818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.43 13.57 55.43 0.75 -26.67 16 2 C 0.02 0.68 5.39 -17.82 -0.10 0.58 16 3 Si 1.07 25.74 29.91 -169.99 -5.08 20.66 16 4 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 7 C -0.54 -15.03 8.52 -34.44 -0.29 -15.33 16 8 H 0.05 1.45 7.82 -52.49 -0.41 1.04 16 9 C 0.03 0.85 0.73 -155.66 -0.11 0.74 16 10 C 0.10 2.19 4.38 -3.82 -0.02 2.17 16 11 N -0.50 -10.26 4.88 -231.25 -1.13 -11.39 16 12 C 0.05 0.98 5.55 -2.30 -0.01 0.97 16 13 C -0.12 -1.76 5.68 -24.59 -0.14 -1.90 16 14 C -0.10 -1.40 2.49 -88.80 -0.22 -1.62 16 15 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 16 C -0.07 -0.83 1.57 -90.62 -0.14 -0.97 16 17 C -0.11 -1.12 5.05 -26.73 -0.14 -1.26 16 18 C -0.12 -1.06 5.92 -26.73 -0.16 -1.21 16 19 C -0.12 -1.02 5.92 -26.73 -0.16 -1.18 16 20 C -0.12 -1.13 5.92 -26.76 -0.16 -1.29 16 21 C -0.12 -1.26 4.97 -26.76 -0.13 -1.39 16 22 C 0.05 0.82 5.47 -2.84 -0.02 0.81 16 23 C -0.20 -4.41 9.05 -26.69 -0.24 -4.65 16 24 C -0.18 -4.33 8.63 -26.69 -0.23 -4.56 16 25 H 0.27 8.05 6.17 -40.82 -0.25 7.80 16 26 H 0.07 1.66 7.85 -51.93 -0.41 1.26 16 27 H 0.00 -0.02 7.90 -51.93 -0.41 -0.43 16 28 H 0.03 0.63 6.69 -51.93 -0.35 0.28 16 29 H 0.08 1.52 8.14 -51.92 -0.42 1.10 16 30 H 0.07 1.03 8.02 -51.93 -0.42 0.61 16 31 H 0.06 0.79 8.12 -51.93 -0.42 0.36 16 32 H 0.07 0.90 8.11 -51.93 -0.42 0.48 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.62 7.48 -51.93 -0.39 0.23 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.78 7.05 -51.93 -0.37 0.41 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.07 1.22 7.47 -51.93 -0.39 0.84 16 44 H 0.04 0.73 7.58 -51.93 -0.39 0.34 16 45 H 0.08 1.74 8.14 -51.93 -0.42 1.31 16 46 H 0.06 1.23 7.38 -51.93 -0.38 0.85 16 47 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 48 H 0.08 2.11 8.14 -51.93 -0.42 1.68 16 LS Contribution 358.39 15.07 5.40 5.40 Total: -1.00 -29.24 358.39 -11.62 -40.87 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -9.30 Total: 1.23 kcal Atomic # 6 Polarization: -27.83 SS G_CDS: -2.27 Total: -30.09 kcal Atomic # 7 Polarization: -37.69 SS G_CDS: -0.38 Total: -38.07 kcal Atomic # 14 Polarization: 25.74 SS G_CDS: -5.08 Total: 20.66 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -29.24 -11.62 -40.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708832908.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.369 kcal (2) G-P(sol) polarization free energy of solvation -29.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds