Wall clock time and date at job start Mon Mar 30 2020 02:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86802 * 119.99807 * 2 1 4 4 H 1.48505 * 109.46813 * 89.99824 * 3 2 1 5 5 H 1.48500 * 109.47211 * 330.00388 * 3 2 1 6 6 H 1.48497 * 109.46812 * 209.99889 * 3 2 1 7 7 C 1.37877 * 120.00059 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99791 * 185.62454 * 7 2 1 9 9 C 1.50696 * 119.99963 * 5.62293 * 7 2 1 10 10 C 1.53006 * 115.55211 * 274.83263 * 9 7 2 11 11 N 1.46900 * 109.46830 * 305.17802 * 10 9 7 12 12 C 1.47839 * 111.00095 * 294.26043 * 11 10 9 13 13 C 1.54907 * 104.79814 * 213.63676 * 12 11 10 14 14 C 1.55139 * 101.64963 * 37.07176 * 13 12 11 15 15 H 1.09003 * 110.70240 * 82.73269 * 14 13 12 16 16 C 1.52999 * 110.70450 * 205.96394 * 14 13 12 17 17 C 1.53010 * 109.47063 * 293.59984 * 16 14 13 18 18 C 1.52999 * 109.47063 * 180.02562 * 17 16 14 19 19 C 1.52993 * 109.47378 * 60.00055 * 18 17 16 20 20 C 1.53002 * 109.47153 * 300.00165 * 19 18 17 21 21 C 1.52993 * 109.47378 * 173.60039 * 16 14 13 22 22 C 1.47445 * 110.99688 * 173.42047 * 11 10 9 23 23 C 1.53003 * 117.50125 * 129.16395 * 9 7 2 24 24 C 1.52998 * 117.50170 * 60.50085 * 9 7 2 25 25 H 0.96998 * 120.00061 * 175.10491 * 1 2 3 26 26 H 1.09001 * 109.46938 * 65.17384 * 10 9 7 27 27 H 1.08995 * 109.47108 * 185.17870 * 10 9 7 28 28 H 1.08998 * 110.37774 * 332.46783 * 12 11 10 29 29 H 1.09009 * 110.37081 * 94.81067 * 12 11 10 30 30 H 1.08997 * 110.99117 * 278.97747 * 13 12 11 31 31 H 1.09000 * 110.98948 * 155.16150 * 13 12 11 32 32 H 1.09002 * 109.47163 * 53.59824 * 16 14 13 33 33 H 1.08994 * 109.46720 * 300.00044 * 17 16 14 34 34 H 1.09001 * 109.46641 * 60.00136 * 17 16 14 35 35 H 1.09002 * 109.47163 * 299.99840 * 18 17 16 36 36 H 1.09004 * 109.47110 * 180.02562 * 18 17 16 37 37 H 1.09000 * 109.47537 * 180.02562 * 19 18 17 38 38 H 1.09002 * 109.47149 * 59.99777 * 19 18 17 39 39 H 1.09002 * 109.46776 * 299.99840 * 20 19 18 40 40 H 1.08999 * 109.47281 * 179.97438 * 20 19 18 41 41 H 1.08996 * 109.47384 * 300.00390 * 21 16 14 42 42 H 1.09002 * 109.47149 * 59.99777 * 21 16 14 43 43 H 1.09001 * 109.88389 * 242.66243 * 22 11 10 44 44 H 1.08992 * 109.88934 * 3.68687 * 22 11 10 45 45 H 1.08996 * 117.49562 * 359.97438 * 23 9 7 46 46 H 1.08997 * 117.50013 * 145.02040 * 23 9 7 47 47 H 1.09001 * 117.50118 * 214.98045 * 24 9 7 48 48 H 1.09007 * 117.49581 * 0.02562 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 1.4465 2.6527 -0.7000 6 1 3.5467 1.4402 -0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0806 -1.1963 0.0911 9 6 1.2566 -2.4959 -0.1290 10 6 0.7118 -3.0758 1.1779 11 7 1.8071 -3.2119 2.1473 12 6 2.7939 -4.2153 1.6943 13 6 3.3112 -4.8772 2.9958 14 6 2.0216 -4.9251 3.8568 15 1 1.4171 -5.7943 3.5973 16 6 2.3663 -4.9296 5.3474 17 6 3.0838 -6.2340 5.7010 18 6 3.4280 -6.2387 7.1918 19 6 2.1418 -6.1256 8.0126 20 6 1.4242 -4.8214 7.6590 21 6 1.0804 -4.8162 6.1686 22 6 1.2956 -3.6199 3.4686 23 6 1.7356 -3.4838 -1.1946 24 6 0.4288 -2.7129 -1.3973 25 1 -0.4850 -0.8370 -0.0717 26 1 -0.0499 -2.4087 1.5817 27 1 0.2727 -4.0547 0.9859 28 1 2.3148 -4.9573 1.0556 29 1 3.6131 -3.7293 1.1642 30 1 4.0749 -4.2610 3.4703 31 1 3.6877 -5.8812 2.8002 32 1 3.0169 -4.0845 5.5725 33 1 2.4333 -7.0790 5.4760 34 1 4.0000 -6.3147 5.1160 35 1 4.0784 -5.3936 7.4173 36 1 3.9396 -7.1677 7.4436 37 1 2.3870 -6.1286 9.0746 38 1 1.4914 -6.9708 7.7871 39 1 2.0746 -3.9762 7.8844 40 1 0.5076 -4.7410 8.2434 41 1 0.5692 -3.8871 5.9168 42 1 0.4298 -5.6613 5.9436 43 1 1.5085 -2.8443 4.2043 44 1 0.2209 -3.7929 3.4129 45 1 2.5916 -3.1919 -1.8030 46 1 1.6623 -4.5468 -0.9647 47 1 -0.5037 -3.2691 -1.3007 48 1 0.4256 -1.9141 -2.1390 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708832908.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:20 Heat of formation + Delta-G solvation = -21.693372 kcal Electronic energy + Delta-G solvation = -22666.409185 eV Core-core repulsion = 19719.516337 eV Total energy + Delta-G solvation = -2946.892848 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.79598 -39.23735 -37.74979 -33.93894 -33.60226 -31.78025 -30.92706 -28.89208 -27.15301 -26.34151 -23.58629 -23.49699 -22.95900 -21.77375 -21.14906 -20.88710 -20.61155 -18.51574 -16.92530 -16.72022 -15.77841 -15.70822 -15.58163 -15.30559 -15.02132 -14.90578 -14.86552 -14.23991 -14.08299 -14.03363 -13.52209 -13.39294 -13.12758 -12.93415 -12.68827 -12.58984 -12.39530 -12.21066 -12.02919 -12.00011 -11.97789 -11.92208 -11.88174 -11.52500 -11.29204 -11.24057 -10.79028 -10.74744 -10.40659 -10.35753 -10.16768 -8.96172 -8.42577 -6.10839 1.55287 1.63750 1.80367 2.63909 3.06522 3.33503 3.42159 3.58525 3.65025 3.81570 4.00367 4.04907 4.10608 4.21814 4.28071 4.38909 4.44036 4.46525 4.49001 4.53726 4.55243 4.65965 4.68545 4.72243 4.74055 4.75543 4.82158 4.82756 4.88743 5.00601 5.02301 5.05072 5.08516 5.20275 5.20834 5.26241 5.29260 5.34175 5.42607 5.44229 5.46678 5.52790 5.53736 5.65577 6.19344 6.34834 6.36502 6.45628 6.85381 7.66084 8.98671 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.022995 B = 0.004202 C = 0.003924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.376145 B = 6661.522874 C = 7133.071776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.024 4.024 3 Si 1.109 2.891 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.544 4.544 8 H 0.035 0.965 9 C 0.008 3.992 10 C 0.112 3.888 11 N -0.528 5.528 12 C 0.054 3.946 13 C -0.112 4.112 14 C -0.090 4.090 15 H 0.075 0.925 16 C -0.067 4.067 17 C -0.109 4.109 18 C -0.118 4.118 19 C -0.117 4.117 20 C -0.118 4.118 21 C -0.116 4.116 22 C 0.048 3.952 23 C -0.173 4.173 24 C -0.187 4.187 25 H 0.263 0.737 26 H 0.034 0.966 27 H 0.013 0.987 28 H 0.037 0.963 29 H 0.056 0.944 30 H 0.071 0.929 31 H 0.091 0.909 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.058 0.942 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.057 0.943 40 H 0.064 0.936 41 H 0.050 0.950 42 H 0.061 0.939 43 H 0.062 0.938 44 H 0.038 0.962 45 H 0.075 0.925 46 H 0.088 0.912 47 H 0.078 0.922 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.257 -14.721 13.745 20.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.222 4.222 3 Si 0.933 3.067 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.582 4.582 8 H 0.053 0.947 9 C 0.007 3.993 10 C -0.017 4.017 11 N -0.251 5.251 12 C -0.073 4.073 13 C -0.150 4.150 14 C -0.109 4.109 15 H 0.094 0.906 16 C -0.085 4.085 17 C -0.147 4.147 18 C -0.156 4.156 19 C -0.154 4.154 20 C -0.156 4.156 21 C -0.153 4.153 22 C -0.079 4.079 23 C -0.210 4.210 24 C -0.225 4.225 25 H 0.073 0.927 26 H 0.053 0.947 27 H 0.030 0.970 28 H 0.055 0.945 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.109 0.891 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.083 0.917 41 H 0.069 0.931 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.056 0.944 45 H 0.094 0.906 46 H 0.107 0.893 47 H 0.097 0.903 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.296 -12.584 13.842 19.443 hybrid contribution -0.679 -1.969 -0.591 2.165 sum 4.618 -14.553 13.252 20.217 Atomic orbital electron populations 1.70803 1.07565 1.30785 1.48840 1.26843 0.96685 1.05273 0.93377 0.83022 0.74216 0.72319 0.77117 1.20795 1.21265 1.20103 1.21296 0.93211 0.90969 1.52711 0.94686 1.19154 0.98602 0.95218 0.86341 1.21578 0.91723 0.95245 0.93121 1.63259 1.13845 1.46105 1.01910 1.22903 0.95086 0.92093 0.97250 1.22739 0.97158 1.00991 0.94091 1.22348 0.96266 0.96408 0.95879 0.90631 1.21054 0.96879 0.98700 0.91912 1.21551 1.00187 0.96450 0.96477 1.21531 0.97452 1.02019 0.94571 1.21528 0.96785 0.97350 0.99772 1.21517 1.00428 0.98264 0.95386 1.21583 0.97005 1.01380 0.95352 1.22883 0.97267 0.96655 0.91121 1.22881 0.96760 0.96177 1.05167 1.22705 0.94210 1.02324 1.03254 0.92691 0.94745 0.96951 0.94490 0.92544 0.90990 0.89051 0.91941 0.91872 0.91599 0.92348 0.91099 0.91380 0.91911 0.92443 0.91719 0.93144 0.91995 0.91967 0.94352 0.90647 0.89327 0.90310 0.92122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.68 13.57 21.45 0.29 -57.39 16 2 C -0.02 -1.36 5.39 84.65 0.46 -0.90 16 3 Si 1.11 52.38 29.91 68.60 2.05 54.43 16 4 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 5 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 6 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 7 C -0.54 -30.81 8.52 25.60 0.22 -30.60 16 8 H 0.03 2.04 7.82 -2.91 -0.02 2.02 16 9 C 0.01 0.38 0.73 -52.93 -0.04 0.34 16 10 C 0.11 5.13 4.38 86.31 0.38 5.51 16 11 N -0.53 -21.76 4.88 -885.55 -4.32 -26.08 16 12 C 0.05 1.90 5.55 86.77 0.48 2.38 16 13 C -0.11 -2.92 5.68 31.98 0.18 -2.74 16 14 C -0.09 -2.27 2.49 -9.61 -0.02 -2.30 16 15 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 16 C -0.07 -1.40 1.57 -10.79 -0.02 -1.42 16 17 C -0.11 -1.85 5.05 30.60 0.15 -1.70 16 18 C -0.12 -1.76 5.92 30.59 0.18 -1.58 16 19 C -0.12 -1.70 5.92 30.59 0.18 -1.52 16 20 C -0.12 -2.04 5.92 30.58 0.18 -1.85 16 21 C -0.12 -2.35 4.97 30.57 0.15 -2.20 16 22 C 0.05 1.64 5.47 86.64 0.47 2.11 16 23 C -0.17 -7.44 9.05 30.62 0.28 -7.16 16 24 C -0.19 -8.81 8.63 30.62 0.26 -8.55 16 25 H 0.26 16.07 6.17 -92.71 -0.57 15.50 16 26 H 0.03 1.77 7.85 -2.39 -0.02 1.75 16 27 H 0.01 0.53 7.90 -2.39 -0.02 0.51 16 28 H 0.04 1.27 6.69 -2.39 -0.02 1.25 16 29 H 0.06 2.19 8.14 -2.38 -0.02 2.17 16 30 H 0.07 1.91 8.02 -2.39 -0.02 1.89 16 31 H 0.09 1.93 8.12 -2.39 -0.02 1.91 16 32 H 0.06 1.46 8.11 -2.39 -0.02 1.44 16 33 H 0.06 1.03 8.14 -2.39 -0.02 1.02 16 34 H 0.07 1.09 7.48 -2.39 -0.02 1.07 16 35 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.07 0.89 8.14 -2.38 -0.02 0.88 16 37 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.05 1.17 7.05 -2.39 -0.02 1.15 16 42 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.06 2.18 7.47 -2.39 -0.02 2.17 16 44 H 0.04 1.31 7.58 -2.39 -0.02 1.29 16 45 H 0.07 3.28 8.14 -2.39 -0.02 3.26 16 46 H 0.09 3.34 7.38 -2.39 -0.02 3.32 16 47 H 0.08 3.41 8.14 -2.39 -0.02 3.39 16 48 H 0.06 3.11 8.14 -2.38 -0.02 3.09 16 Total: -1.00 -63.46 358.39 2.60 -60.86 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: 1.07 Total: 20.36 kcal Atomic # 6 Polarization: -55.68 SS G_CDS: 3.50 Total: -52.18 kcal Atomic # 7 Polarization: -79.44 SS G_CDS: -4.03 Total: -83.47 kcal Atomic # 14 Polarization: 52.38 SS G_CDS: 2.05 Total: 54.43 kcal Total: -63.46 2.60 -60.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708832908.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.166 kcal (2) G-P(sol) polarization free energy of solvation -63.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds