Wall clock time and date at job start Mon Mar 30 2020 02:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 119.99912 * 2 1 4 4 H 1.48498 * 109.47147 * 270.00350 * 3 2 1 5 5 H 1.48501 * 109.47081 * 30.00214 * 3 2 1 6 6 H 1.48500 * 109.47352 * 150.00434 * 3 2 1 7 7 C 1.37882 * 120.00329 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99960 * 173.20430 * 7 2 1 9 9 C 1.50703 * 119.99709 * 353.20179 * 7 2 1 10 10 C 1.53000 * 115.54739 * 85.09049 * 9 7 2 11 11 N 1.46903 * 109.47063 * 65.17149 * 10 9 7 12 12 C 1.46902 * 111.00009 * 174.73372 * 11 10 9 13 13 H 1.08997 * 109.47001 * 34.99683 * 12 11 10 14 14 C 1.53005 * 109.46856 * 275.00070 * 12 11 10 15 15 C 1.52998 * 109.46711 * 179.97438 * 14 12 11 16 16 C 1.53001 * 109.47241 * 59.99945 * 15 14 12 17 17 H 1.09004 * 109.47129 * 59.99523 * 16 15 14 18 18 C 1.53001 * 109.47039 * 179.97438 * 16 15 14 19 19 C 1.53001 * 109.47221 * 60.00217 * 18 16 15 20 20 C 1.52995 * 109.47139 * 59.99424 * 19 18 16 21 21 C 1.53001 * 109.47535 * 300.00384 * 20 19 18 22 22 C 1.52995 * 109.47289 * 299.99661 * 16 15 14 23 23 H 1.08992 * 109.47478 * 179.97438 * 22 16 15 24 24 C 1.53001 * 109.47203 * 154.99950 * 12 11 10 25 25 C 1.53000 * 117.49680 * 230.76339 * 9 7 2 26 26 C 1.53000 * 117.49799 * 299.42304 * 9 7 2 27 27 H 0.96996 * 120.00571 * 5.04860 * 1 2 3 28 28 H 1.08991 * 109.47474 * 305.16771 * 10 9 7 29 29 H 1.08999 * 109.46670 * 185.16610 * 10 9 7 30 30 H 1.00892 * 110.99679 * 298.68583 * 11 10 9 31 31 H 1.09004 * 109.46890 * 299.99964 * 14 12 11 32 32 H 1.08992 * 109.47501 * 60.00031 * 14 12 11 33 33 H 1.09009 * 109.47100 * 179.97438 * 15 14 12 34 34 H 1.08990 * 109.47425 * 299.99874 * 15 14 12 35 35 H 1.09001 * 109.46911 * 180.02562 * 18 16 15 36 36 H 1.08999 * 109.47435 * 299.99566 * 18 16 15 37 37 H 1.09003 * 109.46636 * 300.00055 * 19 18 16 38 38 H 1.08994 * 109.47081 * 179.97438 * 19 18 16 39 39 H 1.08998 * 109.46940 * 179.97438 * 20 19 18 40 40 H 1.09001 * 109.46842 * 60.00207 * 20 19 18 41 41 H 1.08992 * 109.46876 * 300.00014 * 21 20 19 42 42 H 1.08998 * 109.47246 * 179.97438 * 21 20 19 43 43 H 1.08999 * 109.46652 * 299.99897 * 24 12 11 44 44 H 1.08998 * 109.46738 * 59.99529 * 24 12 11 45 45 H 1.08997 * 117.49662 * 215.00502 * 25 9 7 46 46 H 1.08997 * 117.49959 * 0.02562 * 25 9 7 47 47 H 1.08994 * 117.49898 * 359.97438 * 26 9 7 48 48 H 1.08999 * 117.49804 * 144.99569 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1941 -0.0005 8 1 3.0788 -1.1972 -0.1112 9 6 1.2590 -2.4947 0.1534 10 6 0.6896 -3.0856 -1.1379 11 7 1.7926 -3.4605 -2.0329 12 6 1.2890 -4.1460 -3.2306 13 1 0.3285 -3.7179 -3.5173 14 6 1.1138 -5.6359 -2.9296 15 6 0.5887 -6.3497 -4.1769 16 6 1.5871 -6.1748 -5.3230 17 1 2.5477 -6.6030 -5.0366 18 6 1.0622 -6.8892 -6.5700 19 6 -0.2863 -6.2886 -6.9722 20 6 -0.1116 -4.7988 -7.2734 21 6 0.4133 -4.0844 -6.0263 22 6 1.7622 -4.6850 -5.6239 23 1 2.4738 -4.5603 -6.4400 24 6 2.2879 -3.9711 -4.3763 25 6 1.7581 -3.4733 1.2183 26 6 0.4553 -2.7004 1.4390 27 1 -0.4851 0.8367 -0.0739 28 1 0.0588 -2.3450 -1.6293 29 1 0.0966 -3.9693 -0.9024 30 1 2.3451 -2.6542 -2.2832 31 1 2.0744 -6.0640 -2.6428 32 1 0.4023 -5.7606 -2.1135 33 1 0.4643 -7.4113 -3.9627 34 1 -0.3718 -5.9216 -4.4632 35 1 1.7737 -6.7649 -7.3864 36 1 0.9378 -7.9506 -6.3555 37 1 -0.9975 -6.4132 -6.1557 38 1 -0.6599 -6.7972 -7.8609 39 1 -1.0722 -4.3711 -7.5604 40 1 0.5997 -4.6742 -8.0899 41 1 -0.2979 -4.2090 -5.2099 42 1 0.5382 -3.0231 -6.2411 43 1 2.4126 -2.9096 -4.5905 44 1 3.2483 -4.3991 -4.0894 45 1 1.6809 -4.5381 0.9990 46 1 2.6254 -3.1762 1.8079 47 1 0.4662 -1.8952 2.1735 48 1 -0.4790 -3.2568 1.3648 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723669245.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:38 Heat of formation + Delta-G solvation = -15.042664 kcal Electronic energy + Delta-G solvation = -22816.092407 eV Core-core repulsion = 19869.487956 eV Total energy + Delta-G solvation = -2946.604451 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.24364 -37.00341 -35.46195 -32.61148 -31.98233 -31.81433 -29.53260 -27.85090 -25.52021 -24.06013 -23.29867 -22.16556 -21.45182 -20.91039 -20.22495 -18.97185 -17.78050 -15.94075 -15.52415 -15.39024 -14.75869 -14.61414 -14.41808 -13.95647 -13.85966 -13.62711 -13.27129 -12.88653 -12.66335 -12.27350 -12.03431 -11.97220 -11.81750 -11.58866 -11.41068 -11.18411 -11.04157 -10.94267 -10.88107 -10.74450 -10.46312 -10.39191 -10.27178 -10.07870 -9.88920 -9.74897 -9.58342 -9.29880 -8.69282 -8.37341 -7.99895 -7.38341 -5.98957 -4.04661 3.29152 3.37178 3.41180 4.42360 4.59625 4.63155 4.66283 4.94886 5.04601 5.18249 5.25648 5.29858 5.32023 5.44658 5.48539 5.51240 5.59684 5.63931 5.69200 5.71725 5.77969 5.87109 5.93236 5.99189 6.01666 6.09951 6.16674 6.19757 6.25760 6.32169 6.37166 6.39857 6.46126 6.54046 6.57541 6.62103 6.66015 6.75409 6.92364 6.94041 7.02260 7.22611 7.58635 7.63379 7.91709 8.12392 8.40278 8.55242 8.98610 9.60618 11.08962 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.023275 B = 0.004368 C = 0.003994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.723273 B = 6408.712061 C = 7008.976707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.070 3.930 3 Si 0.886 3.114 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.491 4.491 8 H 0.059 0.941 9 C 0.051 3.949 10 C 0.109 3.891 11 N -0.679 5.679 12 C 0.087 3.913 13 H 0.037 0.963 14 C -0.104 4.104 15 C -0.116 4.116 16 C -0.080 4.080 17 H 0.068 0.932 18 C -0.113 4.113 19 C -0.121 4.121 20 C -0.118 4.118 21 C -0.120 4.120 22 C -0.075 4.075 23 H 0.065 0.935 24 C -0.115 4.115 25 C -0.200 4.200 26 C -0.163 4.163 27 H 0.258 0.742 28 H 0.032 0.968 29 H 0.035 0.965 30 H 0.346 0.654 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.064 0.936 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.065 0.935 38 H 0.055 0.945 39 H 0.057 0.943 40 H 0.057 0.943 41 H 0.070 0.930 42 H 0.059 0.941 43 H 0.059 0.941 44 H 0.068 0.932 45 H 0.064 0.936 46 H 0.071 0.929 47 H 0.077 0.923 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.217 -11.569 -13.217 17.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.133 4.133 3 Si 0.714 3.286 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.529 4.529 8 H 0.077 0.923 9 C 0.050 3.950 10 C -0.020 4.020 11 N -0.310 5.310 12 C -0.023 4.023 13 H 0.055 0.945 14 C -0.143 4.143 15 C -0.153 4.153 16 C -0.099 4.099 17 H 0.086 0.914 18 C -0.151 4.151 19 C -0.159 4.159 20 C -0.155 4.155 21 C -0.158 4.158 22 C -0.094 4.094 23 H 0.083 0.917 24 C -0.153 4.153 25 C -0.237 4.237 26 C -0.202 4.202 27 H 0.068 0.932 28 H 0.051 0.949 29 H 0.054 0.946 30 H 0.165 0.835 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.089 0.911 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.086 0.914 45 H 0.082 0.918 46 H 0.090 0.910 47 H 0.096 0.904 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.188 -12.005 -12.802 17.551 hybrid contribution -0.062 1.750 -0.429 1.803 sum 0.126 -10.255 -13.231 16.740 Atomic orbital electron populations 1.69991 1.05859 1.26502 1.49413 1.24995 0.94747 0.98753 0.94770 0.86694 0.80074 0.83814 0.78045 1.20809 1.21309 1.19817 1.20465 0.93054 0.88863 1.50557 0.92260 1.18744 0.97224 0.93274 0.85710 1.21427 0.91001 0.95626 0.93964 1.60447 1.23866 1.32031 1.14690 1.21467 0.96242 0.94628 0.89960 0.94525 1.21503 1.01265 0.95083 0.96400 1.21679 0.98919 0.99773 0.94970 1.21115 0.98947 0.95143 0.94670 0.91393 1.21557 0.96885 0.99041 0.97613 1.21569 0.97671 0.95764 1.00859 1.21517 1.00613 0.95400 0.97981 1.21707 0.97280 0.99065 0.97717 1.21078 0.96686 0.94491 0.97195 0.91690 1.21735 0.99257 1.00092 0.94200 1.22854 0.97568 0.95839 1.07467 1.22526 0.92393 1.01335 1.03900 0.93183 0.94943 0.94639 0.83508 0.91759 0.92453 0.92559 0.91727 0.92351 0.92325 0.91668 0.92638 0.92413 0.92411 0.91124 0.92250 0.92195 0.91361 0.91754 0.91006 0.90418 0.92293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.88 12.94 55.43 0.72 -24.16 16 2 C 0.07 1.90 5.39 -17.82 -0.10 1.81 16 3 Si 0.89 21.02 29.55 -169.99 -5.02 16.00 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.49 -13.22 8.33 -34.44 -0.29 -13.51 16 8 H 0.06 1.61 7.82 -52.49 -0.41 1.20 16 9 C 0.05 1.27 1.56 -155.66 -0.24 1.02 16 10 C 0.11 2.45 5.32 -3.82 -0.02 2.43 16 11 N -0.68 -13.32 6.28 -106.72 -0.67 -13.99 16 12 C 0.09 1.40 2.22 -67.71 -0.15 1.25 16 13 H 0.04 0.63 6.14 -51.93 -0.32 0.31 16 14 C -0.10 -1.52 5.42 -26.73 -0.14 -1.66 16 15 C -0.12 -1.37 4.59 -26.73 -0.12 -1.49 16 16 C -0.08 -0.87 2.46 -90.62 -0.22 -1.09 16 17 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 18 C -0.11 -1.06 5.45 -26.73 -0.15 -1.21 16 19 C -0.12 -1.12 5.65 -26.73 -0.15 -1.28 16 20 C -0.12 -1.15 5.92 -26.73 -0.16 -1.31 16 21 C -0.12 -1.39 4.59 -26.71 -0.12 -1.51 16 22 C -0.08 -0.87 2.47 -90.57 -0.22 -1.10 16 23 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 24 C -0.11 -1.59 4.73 -26.70 -0.13 -1.71 16 25 C -0.20 -4.56 9.96 -26.69 -0.27 -4.82 16 26 C -0.16 -3.96 9.45 -26.69 -0.25 -4.21 16 27 H 0.26 7.02 8.32 -40.82 -0.34 6.68 16 28 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.04 0.77 7.28 -51.93 -0.38 0.39 16 30 H 0.35 7.15 7.91 -39.30 -0.31 6.84 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.06 0.91 7.38 -51.93 -0.38 0.52 16 33 H 0.06 0.62 8.14 -51.92 -0.42 0.19 16 34 H 0.06 0.78 4.81 -51.93 -0.25 0.53 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.64 6.43 -51.93 -0.33 0.30 16 38 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.91 4.81 -51.93 -0.25 0.66 16 42 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.06 0.86 8.12 -51.93 -0.42 0.43 16 44 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 46 H 0.07 1.63 8.14 -51.93 -0.42 1.21 16 47 H 0.08 2.00 8.14 -51.93 -0.42 1.58 16 48 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 352.87 15.07 5.32 5.32 Total: -1.00 -27.06 352.87 -11.35 -38.40 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: -8.96 Total: 6.84 kcal Atomic # 6 Polarization: -25.66 SS G_CDS: -2.73 Total: -28.40 kcal Atomic # 7 Polarization: -38.21 SS G_CDS: 0.05 Total: -38.16 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -27.06 -11.35 -38.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723669245.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.359 kcal (2) G-P(sol) polarization free energy of solvation -27.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds