Wall clock time and date at job start Mon Mar 30 2020 02:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 119.99912 * 2 1 4 4 H 1.48498 * 109.47147 * 270.00350 * 3 2 1 5 5 H 1.48501 * 109.47081 * 30.00214 * 3 2 1 6 6 H 1.48500 * 109.47352 * 150.00434 * 3 2 1 7 7 C 1.37882 * 120.00329 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99960 * 173.20430 * 7 2 1 9 9 C 1.50703 * 119.99709 * 353.20179 * 7 2 1 10 10 C 1.53000 * 115.54739 * 85.09049 * 9 7 2 11 11 N 1.46903 * 109.47063 * 65.17149 * 10 9 7 12 12 C 1.46902 * 111.00009 * 174.73372 * 11 10 9 13 13 H 1.08997 * 109.47001 * 34.99683 * 12 11 10 14 14 C 1.53005 * 109.46856 * 275.00070 * 12 11 10 15 15 C 1.52998 * 109.46711 * 179.97438 * 14 12 11 16 16 C 1.53001 * 109.47241 * 59.99945 * 15 14 12 17 17 H 1.09004 * 109.47129 * 59.99523 * 16 15 14 18 18 C 1.53001 * 109.47039 * 179.97438 * 16 15 14 19 19 C 1.53001 * 109.47221 * 60.00217 * 18 16 15 20 20 C 1.52995 * 109.47139 * 59.99424 * 19 18 16 21 21 C 1.53001 * 109.47535 * 300.00384 * 20 19 18 22 22 C 1.52995 * 109.47289 * 299.99661 * 16 15 14 23 23 H 1.08992 * 109.47478 * 179.97438 * 22 16 15 24 24 C 1.53001 * 109.47203 * 154.99950 * 12 11 10 25 25 C 1.53000 * 117.49680 * 230.76339 * 9 7 2 26 26 C 1.53000 * 117.49799 * 299.42304 * 9 7 2 27 27 H 0.96996 * 120.00571 * 5.04860 * 1 2 3 28 28 H 1.08991 * 109.47474 * 305.16771 * 10 9 7 29 29 H 1.08999 * 109.46670 * 185.16610 * 10 9 7 30 30 H 1.00892 * 110.99679 * 298.68583 * 11 10 9 31 31 H 1.09004 * 109.46890 * 299.99964 * 14 12 11 32 32 H 1.08992 * 109.47501 * 60.00031 * 14 12 11 33 33 H 1.09009 * 109.47100 * 179.97438 * 15 14 12 34 34 H 1.08990 * 109.47425 * 299.99874 * 15 14 12 35 35 H 1.09001 * 109.46911 * 180.02562 * 18 16 15 36 36 H 1.08999 * 109.47435 * 299.99566 * 18 16 15 37 37 H 1.09003 * 109.46636 * 300.00055 * 19 18 16 38 38 H 1.08994 * 109.47081 * 179.97438 * 19 18 16 39 39 H 1.08998 * 109.46940 * 179.97438 * 20 19 18 40 40 H 1.09001 * 109.46842 * 60.00207 * 20 19 18 41 41 H 1.08992 * 109.46876 * 300.00014 * 21 20 19 42 42 H 1.08998 * 109.47246 * 179.97438 * 21 20 19 43 43 H 1.08999 * 109.46652 * 299.99897 * 24 12 11 44 44 H 1.08998 * 109.46738 * 59.99529 * 24 12 11 45 45 H 1.08997 * 117.49662 * 215.00502 * 25 9 7 46 46 H 1.08997 * 117.49959 * 0.02562 * 25 9 7 47 47 H 1.08994 * 117.49898 * 359.97438 * 26 9 7 48 48 H 1.08999 * 117.49804 * 144.99569 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1941 -0.0005 8 1 3.0788 -1.1972 -0.1112 9 6 1.2590 -2.4947 0.1534 10 6 0.6896 -3.0856 -1.1379 11 7 1.7926 -3.4605 -2.0329 12 6 1.2890 -4.1460 -3.2306 13 1 0.3285 -3.7179 -3.5173 14 6 1.1138 -5.6359 -2.9296 15 6 0.5887 -6.3497 -4.1769 16 6 1.5871 -6.1748 -5.3230 17 1 2.5477 -6.6030 -5.0366 18 6 1.0622 -6.8892 -6.5700 19 6 -0.2863 -6.2886 -6.9722 20 6 -0.1116 -4.7988 -7.2734 21 6 0.4133 -4.0844 -6.0263 22 6 1.7622 -4.6850 -5.6239 23 1 2.4738 -4.5603 -6.4400 24 6 2.2879 -3.9711 -4.3763 25 6 1.7581 -3.4733 1.2183 26 6 0.4553 -2.7004 1.4390 27 1 -0.4851 0.8367 -0.0739 28 1 0.0588 -2.3450 -1.6293 29 1 0.0966 -3.9693 -0.9024 30 1 2.3451 -2.6542 -2.2832 31 1 2.0744 -6.0640 -2.6428 32 1 0.4023 -5.7606 -2.1135 33 1 0.4643 -7.4113 -3.9627 34 1 -0.3718 -5.9216 -4.4632 35 1 1.7737 -6.7649 -7.3864 36 1 0.9378 -7.9506 -6.3555 37 1 -0.9975 -6.4132 -6.1557 38 1 -0.6599 -6.7972 -7.8609 39 1 -1.0722 -4.3711 -7.5604 40 1 0.5997 -4.6742 -8.0899 41 1 -0.2979 -4.2090 -5.2099 42 1 0.5382 -3.0231 -6.2411 43 1 2.4126 -2.9096 -4.5905 44 1 3.2483 -4.3991 -4.0894 45 1 1.6809 -4.5381 0.9990 46 1 2.6254 -3.1762 1.8079 47 1 0.4662 -1.8952 2.1735 48 1 -0.4790 -3.2568 1.3648 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723669245.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:37 Heat of formation + Delta-G solvation = -27.556312 kcal Electronic energy + Delta-G solvation = -22816.635040 eV Core-core repulsion = 19869.487956 eV Total energy + Delta-G solvation = -2947.147084 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.24065 -38.75084 -36.81633 -34.01805 -33.74770 -32.95036 -30.54663 -29.06894 -27.54220 -25.63044 -24.34418 -23.09141 -22.88045 -22.41548 -21.37510 -20.88237 -18.77790 -17.89674 -16.72149 -16.63328 -16.40276 -15.94057 -15.75349 -15.54597 -15.01247 -14.82747 -14.49491 -14.21250 -13.97542 -13.68508 -13.24325 -13.11880 -12.99993 -12.92032 -12.86743 -12.80625 -12.72842 -12.40537 -12.22362 -12.05059 -11.99572 -11.77307 -11.56677 -11.26646 -11.23194 -10.77890 -10.73001 -10.65711 -10.61086 -10.37595 -9.91390 -9.05500 -8.08031 -6.19185 1.39647 1.42830 1.51943 2.42872 3.19827 3.28052 3.68429 3.70682 3.75267 3.95575 4.09135 4.21222 4.33999 4.35795 4.38275 4.49319 4.53667 4.57155 4.59002 4.64750 4.70128 4.74272 4.77212 4.82114 4.88472 4.93044 4.99720 5.01610 5.06103 5.12363 5.16822 5.23860 5.24283 5.26687 5.29749 5.33348 5.40921 5.42454 5.46993 5.57524 5.62086 5.66422 5.69775 5.73859 5.81201 6.43544 6.50839 6.71538 6.90415 7.48750 8.99455 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.023275 B = 0.004368 C = 0.003994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.723273 B = 6408.712061 C = 7008.976707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.026 3.974 3 Si 0.947 3.053 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.270 1.270 7 C -0.502 4.502 8 H 0.052 0.948 9 C 0.026 3.974 10 C 0.127 3.873 11 N -0.677 5.677 12 C 0.087 3.913 13 H 0.022 0.978 14 C -0.099 4.099 15 C -0.109 4.109 16 C -0.078 4.078 17 H 0.071 0.929 18 C -0.109 4.109 19 C -0.121 4.121 20 C -0.114 4.114 21 C -0.120 4.120 22 C -0.070 4.070 23 H 0.078 0.922 24 C -0.110 4.110 25 C -0.177 4.177 26 C -0.169 4.169 27 H 0.258 0.742 28 H -0.002 1.002 29 H 0.041 0.959 30 H 0.338 0.662 31 H 0.062 0.938 32 H 0.041 0.959 33 H 0.071 0.929 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.058 0.942 38 H 0.070 0.930 39 H 0.059 0.941 40 H 0.067 0.933 41 H 0.053 0.947 42 H 0.049 0.951 43 H 0.050 0.950 44 H 0.069 0.931 45 H 0.084 0.916 46 H 0.072 0.928 47 H 0.056 0.944 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.057 -12.920 -14.709 19.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.174 4.174 3 Si 0.773 3.227 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.194 1.194 7 C -0.540 4.540 8 H 0.071 0.929 9 C 0.026 3.974 10 C -0.003 4.003 11 N -0.307 5.307 12 C -0.022 4.022 13 H 0.040 0.960 14 C -0.137 4.137 15 C -0.147 4.147 16 C -0.096 4.096 17 H 0.089 0.911 18 C -0.146 4.146 19 C -0.158 4.158 20 C -0.152 4.152 21 C -0.158 4.158 22 C -0.089 4.089 23 H 0.097 0.903 24 C -0.147 4.147 25 C -0.214 4.214 26 C -0.207 4.207 27 H 0.067 0.933 28 H 0.016 0.984 29 H 0.059 0.941 30 H 0.156 0.844 31 H 0.081 0.919 32 H 0.060 0.940 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.076 0.924 38 H 0.089 0.911 39 H 0.078 0.922 40 H 0.085 0.915 41 H 0.072 0.928 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.088 0.912 45 H 0.102 0.898 46 H 0.090 0.910 47 H 0.075 0.925 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.038 -13.372 -14.300 19.606 hybrid contribution -0.326 2.160 0.058 2.185 sum 0.712 -11.212 -14.242 18.140 Atomic orbital electron populations 1.70102 1.07122 1.27112 1.50427 1.25654 0.95450 1.01750 0.94572 0.85731 0.78834 0.79972 0.78179 1.20136 1.21340 1.19415 1.20677 0.92875 0.90132 1.50268 0.92943 1.18915 0.98050 0.93618 0.86834 1.21108 0.91168 0.94567 0.93410 1.60484 1.22782 1.31325 1.16140 1.21569 0.96119 0.95139 0.89402 0.96007 1.21449 1.00847 0.93993 0.97434 1.21631 0.98942 1.00132 0.93976 1.21101 0.98828 0.94559 0.95106 0.91055 1.21529 0.96896 0.99355 0.96848 1.21574 0.97648 0.95281 1.01312 1.21497 1.00879 0.95724 0.97087 1.21680 0.97015 0.98897 0.98190 1.21058 0.96770 0.94889 0.96212 0.90331 1.21689 0.98664 0.99975 0.94418 1.22819 0.96536 0.96421 1.05614 1.22446 0.93618 1.01358 1.03297 0.93309 0.98425 0.94083 0.84446 0.91918 0.94042 0.91081 0.92051 0.91350 0.91223 0.92368 0.91126 0.92193 0.91464 0.92842 0.93198 0.93144 0.91188 0.89797 0.90973 0.92538 0.91333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.42 12.94 21.45 0.28 -52.14 16 2 C 0.03 1.41 5.39 84.66 0.46 1.87 16 3 Si 0.95 43.53 29.55 68.60 2.03 45.56 16 4 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 5 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 6 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 7 C -0.50 -27.32 8.33 25.60 0.21 -27.10 16 8 H 0.05 2.86 7.82 -2.91 -0.02 2.84 16 9 C 0.03 1.33 1.56 -52.93 -0.08 1.24 16 10 C 0.13 5.86 5.32 86.30 0.46 6.32 16 11 N -0.68 -26.93 6.28 -491.57 -3.09 -30.01 16 12 C 0.09 2.82 2.22 44.92 0.10 2.92 16 13 H 0.02 0.78 6.14 -2.39 -0.01 0.77 16 14 C -0.10 -2.82 5.42 30.60 0.17 -2.65 16 15 C -0.11 -2.40 4.59 30.59 0.14 -2.26 16 16 C -0.08 -1.50 2.46 -10.79 -0.03 -1.52 16 17 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 18 C -0.11 -1.68 5.45 30.59 0.17 -1.51 16 19 C -0.12 -1.92 5.65 30.59 0.17 -1.74 16 20 C -0.11 -2.02 5.92 30.59 0.18 -1.84 16 21 C -0.12 -2.69 4.59 30.61 0.14 -2.55 16 22 C -0.07 -1.52 2.47 -10.76 -0.03 -1.54 16 23 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 24 C -0.11 -2.97 4.73 30.61 0.14 -2.82 16 25 C -0.18 -7.93 9.96 30.62 0.30 -7.62 16 26 C -0.17 -8.25 9.45 30.62 0.29 -7.96 16 27 H 0.26 14.26 8.32 -92.71 -0.77 13.49 16 28 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 29 H 0.04 1.81 7.28 -2.39 -0.02 1.80 16 30 H 0.34 14.26 7.91 -89.70 -0.71 13.55 16 31 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 32 H 0.04 1.29 7.38 -2.39 -0.02 1.28 16 33 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 34 H 0.06 1.42 4.81 -2.39 -0.01 1.40 16 35 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.06 1.01 6.43 -2.39 -0.02 1.00 16 38 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.07 1.07 8.14 -2.39 -0.02 1.06 16 41 H 0.05 1.37 4.81 -2.39 -0.01 1.36 16 42 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.05 1.45 8.12 -2.39 -0.02 1.43 16 44 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 45 H 0.08 3.42 8.14 -2.39 -0.02 3.40 16 46 H 0.07 3.22 8.14 -2.39 -0.02 3.20 16 47 H 0.06 2.96 8.14 -2.39 -0.02 2.94 16 48 H 0.07 3.16 8.14 -2.39 -0.02 3.14 16 Total: -1.00 -57.75 352.87 2.22 -55.54 By element: Atomic # 1 Polarization: 29.65 SS G_CDS: 0.20 Total: 29.84 kcal Atomic # 6 Polarization: -51.59 SS G_CDS: 2.80 Total: -48.79 kcal Atomic # 7 Polarization: -79.34 SS G_CDS: -2.81 Total: -82.15 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -57.75 2.22 -55.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723669245.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.983 kcal (2) G-P(sol) polarization free energy of solvation -57.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds