Wall clock time and date at job start Mon Mar 30 2020 02:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86799 * 120.00290 * 2 1 4 4 H 1.48501 * 109.46887 * 239.99661 * 3 2 1 5 5 H 1.48500 * 109.46949 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47130 * 119.99405 * 3 2 1 7 7 C 1.37879 * 119.99678 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00185 * 173.48250 * 7 2 1 9 9 C 1.50706 * 120.00093 * 353.47892 * 7 2 1 10 10 C 1.53001 * 115.54912 * 85.31887 * 9 7 2 11 11 N 1.46899 * 109.46925 * 65.04970 * 10 9 7 12 12 C 1.46899 * 110.99996 * 185.41950 * 11 10 9 13 13 H 1.09006 * 109.47329 * 34.99800 * 12 11 10 14 14 C 1.52999 * 109.47451 * 275.00208 * 12 11 10 15 15 C 1.53001 * 109.47755 * 179.97438 * 14 12 11 16 16 C 1.53004 * 109.46570 * 59.99807 * 15 14 12 17 17 H 1.09001 * 109.46941 * 180.02562 * 16 15 14 18 18 C 1.52999 * 109.47311 * 60.00213 * 16 15 14 19 19 C 1.52999 * 109.47135 * 179.97438 * 18 16 15 20 20 C 1.52999 * 109.46927 * 60.00594 * 19 18 16 21 21 C 1.53008 * 109.46910 * 299.99549 * 20 19 18 22 22 C 1.52995 * 109.47033 * 60.00114 * 21 20 19 23 23 H 1.08997 * 109.47567 * 180.02562 * 22 21 20 24 24 C 1.52999 * 109.47495 * 155.00017 * 12 11 10 25 25 C 1.52998 * 117.49939 * 230.98842 * 9 7 2 26 26 C 1.52994 * 117.50018 * 299.65186 * 9 7 2 27 27 H 0.97002 * 119.99564 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.46871 * 305.04943 * 10 9 7 29 29 H 1.08994 * 109.47492 * 185.05147 * 10 9 7 30 30 H 1.00896 * 111.00312 * 61.46756 * 11 10 9 31 31 H 1.09000 * 109.46875 * 300.00360 * 14 12 11 32 32 H 1.09000 * 109.46992 * 59.99403 * 14 12 11 33 33 H 1.08994 * 109.46889 * 179.97438 * 15 14 12 34 34 H 1.09000 * 109.46984 * 300.00358 * 15 14 12 35 35 H 1.09001 * 109.47129 * 299.99899 * 18 16 15 36 36 H 1.09004 * 109.47066 * 59.99636 * 18 16 15 37 37 H 1.09000 * 109.46609 * 179.97438 * 19 18 16 38 38 H 1.08998 * 109.47383 * 299.99670 * 19 18 16 39 39 H 1.08989 * 109.47741 * 59.99473 * 20 19 18 40 40 H 1.09000 * 109.46992 * 180.02562 * 20 19 18 41 41 H 1.08998 * 109.46711 * 300.00503 * 21 20 19 42 42 H 1.08991 * 109.47049 * 180.02562 * 21 20 19 43 43 H 1.08991 * 109.47091 * 60.00115 * 24 12 11 44 44 H 1.09004 * 109.47040 * 300.00028 * 24 12 11 45 45 H 1.09002 * 117.49948 * 215.00402 * 25 9 7 46 46 H 1.09004 * 117.49639 * 0.02562 * 25 9 7 47 47 H 1.09007 * 117.50155 * 359.96927 * 26 9 7 48 48 H 1.09001 * 117.50276 * 144.99862 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0793 -1.1973 -0.1056 9 6 1.2583 -2.4949 0.1493 10 6 0.6989 -3.0867 -1.1460 11 7 1.8088 -3.4589 -2.0335 12 6 1.3099 -3.9119 -3.3388 13 1 0.4199 -3.3417 -3.6055 14 6 0.9587 -5.3991 -3.2625 15 6 0.4384 -5.8708 -4.6218 16 6 1.5186 -5.6556 -5.6838 17 1 1.1479 -5.9913 -6.6524 18 6 2.7679 -6.4560 -5.3102 19 6 3.8478 -6.2414 -6.3725 20 6 4.1991 -4.7543 -6.4493 21 6 2.9498 -3.9538 -6.8230 22 6 1.8699 -4.1685 -5.7608 23 1 0.9798 -3.5986 -6.0271 24 6 2.3904 -3.6969 -4.4005 25 6 1.7496 -3.4729 1.2184 26 6 0.4449 -2.7004 1.4288 27 1 -0.4849 0.8401 -0.0004 28 1 0.0699 -2.3471 -1.6414 29 1 0.1061 -3.9716 -0.9149 30 1 2.3934 -4.1615 -1.6063 31 1 1.8485 -5.9693 -2.9958 32 1 0.1889 -5.5523 -2.5061 33 1 0.1887 -6.9303 -4.5675 34 1 -0.4515 -5.3005 -4.8881 35 1 3.1385 -6.1200 -4.3417 36 1 2.5177 -7.5156 -5.2557 37 1 4.7379 -6.8113 -6.1060 38 1 3.4770 -6.5777 -7.3407 39 1 4.5699 -4.4180 -5.4811 40 1 4.9682 -4.6012 -7.2064 41 1 2.5791 -4.2901 -7.7912 42 1 3.2002 -2.8944 -6.8782 43 1 3.2802 -4.2671 -4.1339 44 1 2.6405 -2.6373 -4.4549 45 1 1.6744 -4.5380 0.9990 46 1 2.6123 -3.1753 1.8145 47 1 0.4499 -1.8949 2.1632 48 1 -0.4886 -3.2572 1.3478 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723669249.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:43 Heat of formation + Delta-G solvation = -25.536454 kcal Electronic energy + Delta-G solvation = -22861.448573 eV Core-core repulsion = 19914.389076 eV Total energy + Delta-G solvation = -2947.059496 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.25065 -38.79246 -36.81031 -34.21459 -33.84850 -32.67714 -30.00584 -29.33750 -27.56671 -25.67332 -24.50845 -23.03693 -22.94691 -22.20747 -21.47321 -20.89851 -18.89484 -17.94702 -16.75795 -16.45387 -16.38627 -15.95532 -15.82147 -15.33767 -14.96224 -14.89810 -14.56949 -14.11177 -13.85511 -13.70661 -13.33910 -13.16049 -13.08296 -12.95554 -12.84664 -12.78966 -12.58501 -12.37109 -12.16516 -12.03420 -12.00517 -11.79013 -11.53085 -11.43659 -11.11541 -10.85255 -10.72692 -10.66012 -10.62858 -10.34390 -9.90101 -8.93124 -8.02793 -6.08669 1.43126 1.44085 1.50923 2.48153 3.26222 3.28233 3.63289 3.74513 3.78710 3.93302 4.08169 4.20958 4.28413 4.39264 4.40475 4.45777 4.53533 4.58485 4.59356 4.66134 4.70364 4.74360 4.76320 4.80917 4.83404 4.85927 4.96499 4.99538 5.04762 5.11213 5.16362 5.21635 5.25449 5.28447 5.28909 5.33641 5.39853 5.41773 5.52198 5.61403 5.63239 5.64724 5.73947 5.77889 5.89564 6.42638 6.55632 6.82454 6.94551 7.56178 9.06219 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.020508 B = 0.004652 C = 0.004168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.006893 B = 6016.888715 C = 6716.880173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.021 3.979 3 Si 0.944 3.056 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.478 4.478 8 H 0.047 0.953 9 C 0.024 3.976 10 C 0.129 3.871 11 N -0.676 5.676 12 C 0.090 3.910 13 H 0.045 0.955 14 C -0.140 4.140 15 C -0.107 4.107 16 C -0.073 4.073 17 H 0.078 0.922 18 C -0.116 4.116 19 C -0.114 4.114 20 C -0.122 4.122 21 C -0.110 4.110 22 C -0.079 4.079 23 H 0.057 0.943 24 C -0.091 4.091 25 C -0.186 4.186 26 C -0.167 4.167 27 H 0.255 0.745 28 H 0.035 0.965 29 H 0.003 0.997 30 H 0.335 0.665 31 H 0.072 0.928 32 H 0.044 0.956 33 H 0.073 0.927 34 H 0.054 0.946 35 H 0.058 0.942 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.054 0.946 40 H 0.066 0.934 41 H 0.071 0.929 42 H 0.053 0.947 43 H 0.070 0.930 44 H 0.040 0.960 45 H 0.088 0.912 46 H 0.075 0.925 47 H 0.056 0.944 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.341 -14.098 -13.488 19.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.178 4.178 3 Si 0.770 3.230 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.517 4.517 8 H 0.065 0.935 9 C 0.023 3.977 10 C 0.000 4.000 11 N -0.305 5.305 12 C -0.020 4.020 13 H 0.064 0.936 14 C -0.179 4.179 15 C -0.145 4.145 16 C -0.092 4.092 17 H 0.097 0.903 18 C -0.154 4.154 19 C -0.151 4.151 20 C -0.159 4.159 21 C -0.147 4.147 22 C -0.098 4.098 23 H 0.076 0.924 24 C -0.129 4.129 25 C -0.223 4.223 26 C -0.205 4.205 27 H 0.064 0.936 28 H 0.053 0.947 29 H 0.021 0.979 30 H 0.153 0.847 31 H 0.091 0.909 32 H 0.063 0.937 33 H 0.092 0.908 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.072 0.928 40 H 0.085 0.915 41 H 0.090 0.910 42 H 0.072 0.928 43 H 0.089 0.911 44 H 0.059 0.941 45 H 0.107 0.893 46 H 0.094 0.906 47 H 0.075 0.925 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.300 -13.303 -13.687 19.565 hybrid contribution -0.374 0.592 0.671 0.970 sum 3.925 -12.711 -13.016 18.611 Atomic orbital electron populations 1.70116 1.06909 1.26592 1.51632 1.25582 0.95481 1.01572 0.95146 0.85845 0.78519 0.80060 0.78543 1.20182 1.21305 1.19853 1.20498 0.92454 0.90074 1.48627 0.93494 1.18968 0.98097 0.93980 0.86615 1.21121 0.91026 0.94671 0.93172 1.60264 1.21018 1.45612 1.03560 1.21573 0.96812 0.93606 0.89968 0.93628 1.22215 1.01031 0.96517 0.98106 1.21489 0.97919 1.01193 0.93888 1.21072 0.95216 0.94287 0.98581 0.90342 1.21657 0.95001 0.99609 0.99087 1.21494 0.98506 0.95793 0.99305 1.21570 0.97309 0.95645 1.01417 1.21509 0.95335 0.99734 0.98160 1.21112 0.98069 0.96298 0.94362 0.92415 1.21522 0.97931 1.00104 0.93389 1.22959 0.97046 0.96388 1.05945 1.22426 0.93449 1.01306 1.03332 0.93590 0.94686 0.97878 0.84654 0.90938 0.93701 0.90812 0.92711 0.92334 0.91422 0.91679 0.91399 0.92767 0.91510 0.91020 0.92818 0.91117 0.94082 0.89336 0.90610 0.92502 0.91222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.74 12.93 21.45 0.28 -53.46 16 2 C 0.02 1.18 5.39 84.65 0.46 1.64 16 3 Si 0.94 45.11 29.54 68.60 2.03 47.14 16 4 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 5 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 6 H -0.27 -12.69 7.11 99.48 0.71 -11.99 16 7 C -0.48 -26.71 8.74 25.60 0.22 -26.48 16 8 H 0.05 2.66 7.82 -2.91 -0.02 2.64 16 9 C 0.02 1.20 1.55 -52.93 -0.08 1.11 16 10 C 0.13 5.89 5.34 86.30 0.46 6.35 16 11 N -0.68 -26.46 6.12 -491.57 -3.01 -29.47 16 12 C 0.09 2.93 2.47 44.92 0.11 3.04 16 13 H 0.05 1.68 7.71 -2.38 -0.02 1.66 16 14 C -0.14 -3.64 4.90 30.59 0.15 -3.49 16 15 C -0.11 -2.26 5.45 30.60 0.17 -2.10 16 16 C -0.07 -1.40 2.46 -10.79 -0.03 -1.43 16 17 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 18 C -0.12 -2.05 4.59 30.59 0.14 -1.91 16 19 C -0.11 -1.80 5.92 30.59 0.18 -1.62 16 20 C -0.12 -2.21 5.65 30.60 0.17 -2.04 16 21 C -0.11 -2.15 5.45 30.60 0.17 -1.99 16 22 C -0.08 -1.80 2.47 -10.76 -0.03 -1.83 16 23 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 24 C -0.09 -2.61 4.20 30.62 0.13 -2.49 16 25 C -0.19 -7.94 9.96 30.62 0.30 -7.64 16 26 C -0.17 -7.99 9.42 30.62 0.29 -7.70 16 27 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 28 H 0.03 1.84 7.92 -2.39 -0.02 1.83 16 29 H 0.00 0.14 7.52 -2.39 -0.02 0.12 16 30 H 0.34 12.13 8.53 -89.70 -0.76 11.36 16 31 H 0.07 1.76 6.42 -2.39 -0.02 1.74 16 32 H 0.04 1.27 7.56 -2.39 -0.02 1.25 16 33 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.06 1.20 4.81 -2.39 -0.01 1.19 16 36 H 0.07 1.05 8.14 -2.39 -0.02 1.04 16 37 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.05 1.14 6.43 -2.39 -0.02 1.12 16 40 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.07 1.93 4.81 -2.39 -0.01 1.92 16 44 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 45 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 46 H 0.08 3.22 8.14 -2.39 -0.02 3.21 16 47 H 0.06 2.95 8.14 -2.38 -0.02 2.93 16 48 H 0.07 3.13 8.14 -2.39 -0.02 3.11 16 Total: -1.00 -59.90 353.83 2.25 -57.64 By element: Atomic # 1 Polarization: 26.58 SS G_CDS: 0.14 Total: 26.72 kcal Atomic # 6 Polarization: -51.39 SS G_CDS: 2.82 Total: -48.57 kcal Atomic # 7 Polarization: -80.20 SS G_CDS: -2.73 Total: -82.93 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -59.90 2.25 -57.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723669249.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.107 kcal (2) G-P(sol) polarization free energy of solvation -59.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds