Wall clock time and date at job start Mon Mar 30 2020 02:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08991 * 109.47458 * 2 1 4 4 C 1.52994 * 109.46827 * 239.99775 * 2 1 3 5 5 C 1.50696 * 109.47055 * 65.00342 * 4 2 1 6 6 H 1.08003 * 120.00595 * 359.97438 * 5 4 2 7 7 C 1.37884 * 120.00256 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99755 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00128 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47217 * 60.00012 * 9 7 5 11 11 H 1.48503 * 109.47074 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47269 * 299.99601 * 9 7 5 13 13 C 1.53004 * 109.46812 * 120.00178 * 2 1 3 14 14 N 1.46903 * 109.47214 * 294.99756 * 13 2 1 15 15 C 1.46839 * 111.00216 * 170.00314 * 14 13 2 16 16 C 1.53028 * 109.52594 * 185.83844 * 15 14 13 17 17 C 1.53120 * 109.28025 * 300.82025 * 16 15 14 18 18 C 1.50698 * 109.52612 * 177.55731 * 17 16 15 19 19 C 1.39874 * 126.04031 * 300.12710 * 18 17 16 20 20 N 1.30836 * 108.20052 * 179.73886 * 19 18 17 21 21 N 1.40084 * 108.20904 * 0.40640 * 20 19 18 22 22 H 0.97001 * 126.04219 * 179.85882 * 21 20 19 23 23 C 1.34947 * 107.92164 * 359.58781 * 21 20 19 24 24 C 1.53121 * 109.21208 * 57.62146 * 17 16 15 25 25 C 1.46849 * 110.99819 * 294.21258 * 14 13 2 26 26 H 1.09006 * 109.46533 * 300.00352 * 1 2 3 27 27 H 1.08997 * 109.46716 * 60.00045 * 1 2 3 28 28 H 1.09000 * 109.47389 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47171 * 184.99950 * 4 2 1 30 30 H 1.09001 * 109.47537 * 305.00447 * 4 2 1 31 31 H 0.97002 * 120.00429 * 179.97438 * 8 7 5 32 32 H 1.09004 * 109.46908 * 175.00095 * 13 2 1 33 33 H 1.08997 * 109.47133 * 55.00106 * 13 2 1 34 34 H 1.09005 * 109.46550 * 65.81859 * 15 14 13 35 35 H 1.09004 * 109.45464 * 305.85170 * 15 14 13 36 36 H 1.09001 * 109.51036 * 180.88063 * 16 15 14 37 37 H 1.09006 * 109.50701 * 60.75827 * 16 15 14 38 38 H 1.09002 * 109.51865 * 297.68602 * 17 16 15 39 39 H 1.08001 * 125.89534 * 0.02562 * 19 18 17 40 40 H 1.08007 * 126.12498 * 180.26712 * 23 21 20 41 41 H 1.08996 * 109.50220 * 62.31606 * 24 17 16 42 42 H 1.09001 * 109.50444 * 182.44160 * 24 17 16 43 43 H 1.08995 * 109.46014 * 294.17743 * 25 14 13 44 44 H 1.08999 * 109.46160 * 54.15505 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4765 6 1 1.0800 0.9742 -2.3757 7 6 1.9932 -0.4017 -3.7283 8 7 2.6763 -1.5188 -3.8511 9 14 1.4997 0.5634 -5.2495 10 1 2.0919 1.9237 -5.1865 11 1 1.9956 -0.1361 -6.4620 12 1 0.0197 0.6701 -5.3096 13 6 2.0400 -0.7213 1.2493 14 7 1.6514 0.0374 2.4457 15 6 1.9124 -0.7355 3.6667 16 6 1.3640 0.0217 4.8782 17 6 2.0396 1.3930 4.9657 18 6 1.4604 2.1670 6.1217 19 6 0.1183 2.5278 6.2805 20 7 0.0022 3.1846 7.4061 21 7 1.2701 3.2708 7.9955 22 1 1.4802 3.7062 8.8364 23 6 2.1467 2.6358 7.1895 24 6 1.7947 2.1593 3.6629 25 6 2.3293 1.3394 2.4864 26 1 -0.3632 0.5139 0.8900 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 3.1263 -0.7995 -1.2056 30 1 1.6053 -1.7198 -1.2952 31 1 2.9235 -1.8418 -4.7317 32 1 3.1264 -0.7995 1.2056 33 1 1.6054 -1.7198 1.2951 34 1 2.9867 -0.8783 3.7835 35 1 1.4228 -1.7066 3.5932 36 1 1.5716 -0.5448 5.7860 37 1 0.2874 0.1528 4.7687 38 1 3.1113 1.2620 5.1154 39 1 -0.6842 2.2992 5.5949 40 1 3.2062 2.5219 7.3655 41 1 0.7252 2.3249 3.5336 42 1 2.3100 3.1190 3.7028 43 1 3.4016 1.1868 2.6087 44 1 2.1425 1.8753 1.5558 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000876632942.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:54 Heat of formation + Delta-G solvation = 32.138539 kcal Electronic energy + Delta-G solvation = -21499.002919 eV Core-core repulsion = 18450.904054 eV Total energy + Delta-G solvation = -3048.098864 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.11056 -39.99127 -37.19019 -35.00173 -33.61315 -32.13315 -31.64747 -30.36347 -28.74901 -27.06179 -25.25741 -23.99261 -23.49408 -22.96950 -21.13577 -20.43302 -20.29579 -18.53021 -18.40865 -16.79913 -16.31247 -16.02321 -15.63899 -15.46713 -15.39502 -15.07064 -14.78569 -14.46883 -14.36341 -14.07426 -13.79263 -13.42937 -13.23848 -13.08210 -12.81887 -12.72344 -12.51306 -12.19958 -12.18086 -11.99602 -11.91895 -11.57458 -11.30181 -11.27215 -11.17424 -10.98310 -10.74839 -10.52328 -10.49923 -9.30421 -9.09450 -8.15133 -6.24001 1.05944 1.41300 1.44113 1.51682 1.90608 2.15596 2.43816 3.08310 3.18131 3.77822 3.98740 4.01362 4.15976 4.27759 4.32562 4.44441 4.50292 4.57807 4.58350 4.61223 4.74488 4.76287 4.86283 4.92418 4.93566 5.02373 5.06049 5.12211 5.20899 5.22601 5.31951 5.36754 5.38497 5.52527 5.54900 5.59714 5.66763 5.77864 5.85423 5.92671 6.22721 6.35495 6.39876 6.52962 6.79455 6.91961 7.43995 8.96797 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.038063 B = 0.003020 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.439327 B = 9269.297626 C = 9559.252892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.071 4.071 3 H 0.053 0.947 4 C 0.033 3.967 5 C -0.528 4.528 6 H 0.060 0.940 7 C -0.002 4.002 8 N -0.936 5.936 9 Si 0.960 3.040 10 H -0.268 1.268 11 H -0.285 1.285 12 H -0.268 1.268 13 C 0.073 3.927 14 N -0.535 5.535 15 C 0.053 3.947 16 C -0.096 4.096 17 C 0.000 4.000 18 C -0.238 4.238 19 C 0.051 3.949 20 N -0.337 5.337 21 N -0.475 5.475 22 H 0.450 0.550 23 C 0.069 3.931 24 C -0.096 4.096 25 C 0.052 3.948 26 H 0.065 0.935 27 H 0.035 0.965 28 H 0.035 0.965 29 H -0.016 1.016 30 H -0.011 1.011 31 H 0.262 0.738 32 H 0.017 0.983 33 H 0.066 0.934 34 H 0.030 0.970 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.065 0.935 38 H 0.079 0.921 39 H 0.185 0.815 40 H 0.209 0.791 41 H 0.064 0.936 42 H 0.070 0.930 43 H 0.027 0.973 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.080 7.466 24.365 25.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.090 4.090 3 H 0.072 0.928 4 C -0.005 4.005 5 C -0.566 4.566 6 H 0.078 0.922 7 C -0.199 4.199 8 N -0.577 5.577 9 Si 0.784 3.216 10 H -0.193 1.193 11 H -0.210 1.210 12 H -0.193 1.193 13 C -0.055 4.055 14 N -0.260 5.260 15 C -0.075 4.075 16 C -0.133 4.133 17 C -0.020 4.020 18 C -0.250 4.250 19 C -0.135 4.135 20 N -0.160 5.160 21 N -0.185 5.185 22 H 0.296 0.704 23 C -0.079 4.079 24 C -0.134 4.134 25 C -0.076 4.076 26 H 0.084 0.916 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.002 0.998 30 H 0.008 0.992 31 H 0.070 0.930 32 H 0.035 0.965 33 H 0.084 0.916 34 H 0.049 0.951 35 H 0.090 0.910 36 H 0.094 0.906 37 H 0.084 0.916 38 H 0.097 0.903 39 H 0.202 0.798 40 H 0.225 0.775 41 H 0.083 0.917 42 H 0.088 0.912 43 H 0.046 0.954 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.159 8.045 25.019 26.306 hybrid contribution 1.489 -0.328 -1.405 2.073 sum 0.329 7.717 23.615 24.846 Atomic orbital electron populations 1.21454 0.94740 1.00275 1.00325 1.21024 0.96637 0.98421 0.92933 0.92822 1.19011 0.93956 0.94680 0.92811 1.21614 1.34330 1.08562 0.92102 0.92184 1.25944 0.95295 0.96103 1.02603 1.70094 1.40345 1.22953 1.24289 0.85583 0.78943 0.78802 0.78231 1.19254 1.21029 1.19251 1.22009 0.96633 0.97007 0.89865 1.61919 1.58477 1.03900 1.01672 1.22158 0.98550 0.97049 0.89708 1.21542 1.00601 0.95057 0.96142 1.19395 0.99159 0.92970 0.90476 1.20149 0.93425 1.11115 1.00295 1.23988 0.98067 0.96608 0.94830 1.77276 1.02470 1.24505 1.11720 1.46328 1.05071 1.45512 1.21544 0.70405 1.22929 0.98062 0.95631 0.91326 1.21543 1.01670 0.97600 0.92552 1.22157 0.95380 0.90566 0.99531 0.91563 0.94597 0.94628 0.99763 0.99220 0.92970 0.96502 0.91582 0.95147 0.90975 0.90622 0.91625 0.90277 0.79842 0.77481 0.91686 0.91166 0.95438 0.91773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.30 8.89 71.99 0.64 -3.66 16 2 C -0.07 -2.96 2.26 -10.79 -0.02 -2.99 16 3 H 0.05 2.26 6.22 -2.39 -0.01 2.24 16 4 C 0.03 1.76 4.45 29.84 0.13 1.89 16 5 C -0.53 -30.22 8.41 25.60 0.22 -30.01 16 6 H 0.06 3.31 7.06 -2.91 -0.02 3.29 16 7 C 0.00 -0.14 5.46 84.66 0.46 0.33 16 8 N -0.94 -57.79 13.29 21.45 0.28 -57.51 16 9 Si 0.96 44.91 29.54 68.60 2.03 46.93 16 10 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 11 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 12 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 13 C 0.07 2.54 4.35 86.30 0.38 2.92 16 14 N -0.54 -15.04 4.11 -896.36 -3.69 -18.73 16 15 C 0.05 1.21 5.46 86.32 0.47 1.68 16 16 C -0.10 -1.74 5.29 30.64 0.16 -1.58 16 17 C 0.00 0.00 2.61 -11.46 -0.03 -0.03 16 18 C -0.24 -3.91 4.81 -20.14 -0.10 -4.01 16 19 C 0.05 0.99 11.36 85.24 0.97 1.95 16 20 N -0.34 -6.98 12.70 -57.02 -0.72 -7.71 16 21 N -0.48 -6.47 7.36 -57.59 -0.42 -6.90 16 22 H 0.45 3.19 8.96 -213.33 -1.91 1.28 16 23 C 0.07 0.83 11.88 83.54 0.99 1.82 16 24 C -0.10 -1.95 5.29 30.65 0.16 -1.79 16 25 C 0.05 1.34 5.29 86.33 0.46 1.80 16 26 H 0.07 2.26 7.75 -2.38 -0.02 2.24 16 27 H 0.03 1.49 6.95 -2.39 -0.02 1.47 16 28 H 0.03 1.37 8.14 -2.39 -0.02 1.36 16 29 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 30 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 31 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 32 H 0.02 0.61 8.12 -2.39 -0.02 0.59 16 33 H 0.07 2.32 7.99 -2.39 -0.02 2.30 16 34 H 0.03 0.68 8.14 -2.38 -0.02 0.66 16 35 H 0.07 1.64 8.02 -2.38 -0.02 1.62 16 36 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.06 1.30 7.96 -2.38 -0.02 1.28 16 38 H 0.08 1.20 8.11 -2.39 -0.02 1.19 16 39 H 0.18 3.21 8.06 -2.91 -0.02 3.18 16 40 H 0.21 0.92 8.06 -2.91 -0.02 0.89 16 41 H 0.06 1.42 7.96 -2.39 -0.02 1.40 16 42 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.06 1.91 6.12 -2.39 -0.01 1.89 16 Total: -1.00 -69.08 346.76 1.42 -67.66 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -0.94 Total: 7.93 kcal Atomic # 6 Polarization: -36.57 SS G_CDS: 4.89 Total: -31.69 kcal Atomic # 7 Polarization: -86.29 SS G_CDS: -4.55 Total: -90.84 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.93 kcal Total: -69.08 1.42 -67.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876632942.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.800 kcal (2) G-P(sol) polarization free energy of solvation -69.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds