Wall clock time and date at job start Mon Mar 30 2020 02:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47071 * 2 1 4 4 C 1.52994 * 109.47136 * 120.00709 * 2 1 3 5 5 C 1.50696 * 109.47121 * 294.99753 * 4 2 1 6 6 H 1.07995 * 120.00083 * 359.97438 * 5 4 2 7 7 C 1.37882 * 120.00200 * 180.02562 * 5 4 2 8 8 N 1.31513 * 119.99589 * 359.97438 * 7 5 4 9 9 Si 1.86791 * 120.00196 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47228 * 60.00012 * 9 7 5 11 11 H 1.48499 * 109.47339 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47110 * 299.99945 * 9 7 5 13 13 C 1.53009 * 109.46671 * 240.00625 * 2 1 3 14 14 N 1.46896 * 109.47120 * 63.71606 * 13 2 1 15 15 C 1.46849 * 111.00148 * 75.81525 * 14 13 2 16 16 C 1.53032 * 109.52395 * 185.84036 * 15 14 13 17 17 C 1.53116 * 109.27681 * 300.81706 * 16 15 14 18 18 C 1.50701 * 109.52366 * 177.56035 * 17 16 15 19 19 C 1.39872 * 126.04085 * 300.12812 * 18 17 16 20 20 N 1.30843 * 108.19922 * 179.73751 * 19 18 17 21 21 N 1.40081 * 108.20704 * 0.40717 * 20 19 18 22 22 H 0.97000 * 126.03438 * 179.85286 * 21 20 19 23 23 C 1.34947 * 107.92531 * 359.58729 * 21 20 19 24 24 C 1.53114 * 109.21518 * 57.62523 * 17 16 15 25 25 C 1.46847 * 110.99931 * 200.02176 * 14 13 2 26 26 H 1.09004 * 109.47403 * 185.40698 * 1 2 3 27 27 H 1.09003 * 109.46585 * 305.40718 * 1 2 3 28 28 H 1.09002 * 109.47417 * 65.40418 * 1 2 3 29 29 H 1.08998 * 109.47173 * 54.99811 * 4 2 1 30 30 H 1.09003 * 109.46991 * 174.99531 * 4 2 1 31 31 H 0.97005 * 120.00212 * 180.02562 * 8 7 5 32 32 H 1.09001 * 109.47137 * 303.71573 * 13 2 1 33 33 H 1.09003 * 109.46505 * 183.71756 * 13 2 1 34 34 H 1.08997 * 109.46530 * 65.81462 * 15 14 13 35 35 H 1.09008 * 109.45707 * 305.85054 * 15 14 13 36 36 H 1.08998 * 109.50511 * 180.87399 * 16 15 14 37 37 H 1.09001 * 109.53874 * 60.77698 * 16 15 14 38 38 H 1.08999 * 109.52131 * 297.68285 * 17 16 15 39 39 H 1.07998 * 125.89815 * 359.97438 * 19 18 17 40 40 H 1.08006 * 126.12693 * 180.27000 * 23 21 20 41 41 H 1.08997 * 109.50471 * 62.31339 * 24 17 16 42 42 H 1.08997 * 109.50814 * 182.43894 * 24 17 16 43 43 H 1.08999 * 109.46004 * 294.17518 * 25 14 13 44 44 H 1.08996 * 109.46545 * 54.15364 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 1.6414 0.0568 2.4765 6 1 1.0807 0.9743 2.3757 7 6 1.9933 -0.4021 3.7282 8 7 2.6764 -1.5192 3.8509 9 14 1.4998 0.5628 5.2495 10 1 0.0198 0.6695 5.3096 11 1 1.9947 -0.1374 6.4620 12 1 2.0920 1.9232 5.1866 13 6 2.0399 -0.7212 -1.2494 14 7 1.6249 0.0213 -2.4470 15 6 2.4474 1.2236 -2.6322 16 6 1.8962 2.0456 -3.7994 17 6 1.9127 1.1925 -5.0708 18 6 1.3154 1.9763 -6.2110 19 6 0.0173 2.4946 -6.2625 20 7 -0.1299 3.1152 -7.4049 21 7 1.0685 3.0032 -8.1215 22 1 1.2424 3.3681 -9.0032 23 6 1.9403 2.3030 -7.3660 24 6 1.0897 -0.0772 -4.8363 25 6 1.6634 -0.8369 -3.6380 26 1 -0.3634 -1.0231 0.0968 27 1 -0.3632 0.5954 0.8377 28 1 -0.3634 0.4277 -0.9344 29 1 1.6053 -1.7199 1.2949 30 1 3.1263 -0.7997 1.2054 31 1 2.9237 -1.8423 4.7315 32 1 1.6232 -1.7278 -1.2834 33 1 3.1279 -0.7792 -1.2167 34 1 3.4751 0.9310 -2.8474 35 1 2.4237 1.8235 -1.7224 36 1 2.5162 2.9300 -3.9465 37 1 0.8733 2.3509 -3.5793 38 1 2.9399 0.9211 -5.3140 39 1 -0.7325 2.4021 -5.4907 40 1 2.9551 2.0492 -7.6348 41 1 0.0536 0.1931 -4.6325 42 1 1.1338 -0.7086 -5.7237 43 1 2.6947 -1.1199 -3.8485 44 1 1.0701 -1.7336 -3.4588 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000876632947.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:57 Heat of formation + Delta-G solvation = 50.875803 kcal Electronic energy + Delta-G solvation = -21477.050419 eV Core-core repulsion = 18429.764063 eV Total energy + Delta-G solvation = -3047.286356 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.44106 -38.87728 -35.69721 -33.46226 -31.90368 -31.40703 -30.69913 -29.42142 -26.80146 -25.70147 -23.68814 -22.98896 -22.28691 -22.02658 -20.31739 -19.54353 -18.74745 -17.77667 -16.35361 -15.40856 -14.91957 -14.77412 -14.71764 -14.44352 -14.23392 -14.15864 -13.50794 -13.30561 -13.25372 -12.65751 -12.48244 -12.11312 -12.05073 -11.45279 -11.32203 -11.16851 -11.06700 -10.80521 -10.71211 -10.58899 -10.45554 -10.34081 -10.22563 -10.13350 -9.84184 -9.52162 -9.04029 -8.90397 -8.62649 -8.27729 -7.89452 -5.92974 -3.93665 1.68578 2.60899 2.69250 3.37732 3.41822 3.44618 4.22512 4.49503 4.53123 4.67750 4.84053 5.01039 5.14358 5.34976 5.38720 5.40559 5.42818 5.51246 5.60922 5.71812 5.73310 5.78684 5.97440 6.01361 6.02493 6.16381 6.22551 6.24616 6.27458 6.44610 6.48244 6.50192 6.65111 6.81237 7.02951 7.11383 7.25063 7.29175 7.44554 7.51372 7.55066 7.75397 7.92573 8.08023 8.52714 9.12814 9.69405 11.18612 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.038719 B = 0.002997 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.990343 B = 9340.128633 C = 9616.645945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.077 4.077 3 H 0.054 0.946 4 C 0.027 3.973 5 C -0.511 4.511 6 H 0.055 0.945 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.889 3.111 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.278 1.278 13 C 0.061 3.939 14 N -0.533 5.533 15 C 0.055 3.945 16 C -0.104 4.104 17 C -0.010 4.010 18 C -0.220 4.220 19 C 0.062 3.938 20 N -0.300 5.300 21 N -0.483 5.483 22 H 0.437 0.563 23 C 0.052 3.948 24 C -0.104 4.104 25 C 0.055 3.945 26 H 0.037 0.963 27 H 0.049 0.951 28 H 0.045 0.955 29 H 0.015 0.985 30 H 0.011 0.989 31 H 0.259 0.741 32 H 0.066 0.934 33 H 0.029 0.971 34 H 0.027 0.973 35 H 0.080 0.920 36 H 0.061 0.939 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.183 0.817 40 H 0.173 0.827 41 H 0.071 0.929 42 H 0.060 0.940 43 H 0.026 0.974 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.364 5.538 -23.376 24.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.096 4.096 3 H 0.072 0.928 4 C -0.011 4.011 5 C -0.549 4.549 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.066 4.066 14 N -0.258 5.258 15 C -0.073 4.073 16 C -0.142 4.142 17 C -0.030 4.030 18 C -0.231 4.231 19 C -0.125 4.125 20 N -0.122 5.122 21 N -0.191 5.191 22 H 0.280 0.720 23 C -0.095 4.095 24 C -0.142 4.142 25 C -0.073 4.073 26 H 0.057 0.943 27 H 0.068 0.932 28 H 0.064 0.936 29 H 0.033 0.967 30 H 0.029 0.971 31 H 0.069 0.931 32 H 0.084 0.916 33 H 0.047 0.953 34 H 0.045 0.955 35 H 0.098 0.902 36 H 0.080 0.920 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.200 0.800 40 H 0.190 0.810 41 H 0.090 0.910 42 H 0.079 0.921 43 H 0.044 0.956 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.565 6.227 -23.905 24.752 hybrid contribution 1.404 -0.137 0.883 1.664 sum -0.161 6.090 -23.021 23.814 Atomic orbital electron populations 1.21562 0.95847 1.00502 0.99947 1.21165 0.95893 0.98972 0.93612 0.92770 1.19133 0.95831 0.95529 0.90590 1.21212 1.34457 1.08230 0.91003 0.92646 1.25019 0.95393 0.95108 0.99058 1.69957 1.39188 1.21268 1.23404 0.86703 0.78910 0.80109 0.82538 1.20277 1.21429 1.20336 1.22302 0.97409 0.97140 0.89795 1.61942 1.54227 1.06948 1.02649 1.22112 0.93892 0.92514 0.98828 1.21610 1.02222 0.97274 0.93090 1.19518 0.98214 0.93838 0.91403 1.20169 0.95294 1.09771 0.97915 1.23828 0.97132 0.96123 0.95446 1.77335 1.03702 1.24090 1.07081 1.46274 1.10075 1.44985 1.17748 0.71994 1.22397 0.96799 0.97514 0.92749 1.21604 1.00285 0.95548 0.96726 1.22087 0.98827 0.95903 0.90526 0.94337 0.93219 0.93618 0.96674 0.97061 0.93107 0.91579 0.95305 0.95493 0.90171 0.92027 0.90984 0.91338 0.80031 0.80983 0.91008 0.92098 0.95565 0.90948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.38 8.86 37.16 0.33 -2.05 16 2 C -0.08 -1.59 2.39 -90.62 -0.22 -1.81 16 3 H 0.05 1.14 6.73 -51.93 -0.35 0.79 16 4 C 0.03 0.69 4.45 -27.89 -0.12 0.56 16 5 C -0.51 -14.42 8.47 -34.44 -0.29 -14.71 16 6 H 0.06 1.53 7.06 -52.49 -0.37 1.16 16 7 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -27.22 13.29 55.43 0.74 -26.48 16 9 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 C 0.06 1.05 4.41 -3.82 -0.02 1.03 16 14 N -0.53 -7.70 3.89 -234.66 -0.91 -8.61 16 15 C 0.05 0.73 5.29 -3.83 -0.02 0.70 16 16 C -0.10 -1.14 5.29 -26.65 -0.14 -1.28 16 17 C -0.01 -0.10 2.61 -91.65 -0.24 -0.33 16 18 C -0.22 -2.07 4.81 -105.05 -0.51 -2.57 16 19 C 0.06 0.64 11.36 -17.36 -0.20 0.44 16 20 N -0.30 -3.31 12.70 30.63 0.39 -2.92 16 21 N -0.48 -3.86 7.36 30.45 0.22 -3.63 16 22 H 0.44 2.07 8.96 -182.61 -1.64 0.43 16 23 C 0.05 0.40 11.88 -17.22 -0.20 0.20 16 24 C -0.10 -1.06 5.29 -26.65 -0.14 -1.20 16 25 C 0.05 0.66 5.42 -3.83 -0.02 0.64 16 26 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.05 1.03 7.12 -51.93 -0.37 0.66 16 28 H 0.04 0.80 7.56 -51.93 -0.39 0.41 16 29 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 32 H 0.07 1.15 7.79 -51.93 -0.40 0.74 16 33 H 0.03 0.51 8.00 -51.93 -0.42 0.10 16 34 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.08 1.18 6.67 -51.92 -0.35 0.83 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.83 7.96 -51.93 -0.41 0.42 16 38 H 0.07 0.63 8.11 -51.93 -0.42 0.21 16 39 H 0.18 1.65 8.06 -52.49 -0.42 1.22 16 40 H 0.17 0.77 8.06 -52.48 -0.42 0.35 16 41 H 0.07 0.78 7.96 -51.93 -0.41 0.36 16 42 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.07 0.88 7.93 -51.93 -0.41 0.47 16 LS Contribution 347.36 15.07 5.23 5.23 Total: -1.00 -31.92 347.36 -10.12 -42.05 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -8.89 Total: -3.62 kcal Atomic # 6 Polarization: -17.00 SS G_CDS: -1.89 Total: -18.89 kcal Atomic # 7 Polarization: -42.08 SS G_CDS: 0.44 Total: -41.65 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.92 -10.12 -42.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876632947.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.923 kcal (2) G-P(sol) polarization free energy of solvation -31.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds